Wall clock time and date at job start Tue Mar 31 2020 22:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46966 * 269.99893 * 3 2 1 5 5 H 1.48499 * 109.47128 * 29.99697 * 3 2 1 6 6 H 1.48498 * 109.47204 * 150.00238 * 3 2 1 7 7 C 1.40310 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99385 * 184.58571 * 7 2 1 9 9 C 1.40538 * 120.00345 * 4.58419 * 7 2 1 10 10 C 1.44192 * 123.70940 * 326.48484 * 9 7 2 11 11 C 1.32765 * 114.42512 * 180.02562 * 10 9 7 12 12 S 1.75468 * 111.36551 * 359.73503 * 11 10 9 13 13 C 1.39543 * 123.71636 * 146.49006 * 9 7 2 14 14 C 1.46234 * 125.22884 * 359.97438 * 13 9 7 15 15 O 1.21764 * 120.00013 * 0.02562 * 14 13 9 16 16 N 1.34773 * 120.00397 * 179.97438 * 14 13 9 17 17 C 1.46496 * 120.00312 * 184.87858 * 16 14 13 18 18 C 1.52997 * 109.52078 * 56.11275 * 17 16 14 19 19 C 1.50696 * 109.47258 * 53.95132 * 18 17 16 20 20 O 1.20825 * 120.00183 * 1.74789 * 19 18 17 21 21 O 1.34231 * 120.00174 * 181.74906 * 19 18 17 22 22 C 1.53177 * 109.52039 * 295.98815 * 17 16 14 23 23 C 1.53181 * 109.03428 * 297.07070 * 22 17 16 24 24 C 1.53084 * 109.16722 * 303.02085 * 23 22 17 25 25 O 1.42907 * 109.41480 * 57.61107 * 24 23 22 26 26 C 1.42905 * 114.09497 * 298.84092 * 25 24 23 27 27 H 0.96998 * 120.00516 * 359.97438 * 1 2 3 28 28 H 1.07998 * 122.78861 * 359.97438 * 10 9 7 29 29 H 1.08006 * 124.31954 * 180.02562 * 11 10 9 30 30 H 0.97006 * 119.99520 * 4.87789 * 16 14 13 31 31 H 1.09005 * 109.46841 * 173.95404 * 18 17 16 32 32 H 1.09002 * 109.47015 * 293.94563 * 18 17 16 33 33 H 0.96703 * 117.00042 * 180.02562 * 21 19 18 34 34 H 1.09001 * 109.54057 * 177.20826 * 22 17 16 35 35 H 1.08994 * 109.54934 * 56.94106 * 22 17 16 36 36 H 1.09007 * 109.52190 * 183.11501 * 23 22 17 37 37 H 1.08999 * 109.52047 * 62.93001 * 23 22 17 38 38 H 1.09002 * 109.48263 * 177.58674 * 24 23 22 39 39 H 1.09003 * 109.48427 * 297.62869 * 24 23 22 40 40 H 1.09001 * 109.48190 * 301.17253 * 26 25 24 41 41 H 1.08998 * 109.47937 * 181.14098 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4402 0.7000 7 6 2.0079 -1.2152 0.0005 8 1 3.0853 -1.2165 0.0753 9 6 1.3086 -2.4304 -0.0962 10 6 -0.0001 -2.6477 0.4687 11 6 -0.4892 -3.8656 0.2683 12 16 0.6276 -4.8599 -0.6498 13 6 1.8044 -3.5594 -0.7494 14 6 3.1016 -3.6450 -1.4190 15 8 3.8438 -2.6799 -1.4341 16 7 3.4761 -4.7925 -2.0185 17 6 4.8170 -4.9135 -2.5960 18 6 5.8650 -4.6150 -1.5220 19 6 5.6232 -5.4981 -0.3251 20 8 4.7263 -6.3075 -0.3427 21 8 6.4043 -5.3856 0.7607 22 6 4.9689 -3.9179 -3.7502 23 6 3.9661 -4.2737 -4.8521 24 6 4.2004 -5.7195 -5.2973 25 8 4.0747 -6.5897 -4.1707 26 6 5.0184 -6.3347 -3.1283 27 1 -0.4851 0.8400 0.0004 28 1 -0.5375 -1.8835 1.0107 29 1 -1.4537 -4.2001 0.6210 30 1 2.8577 -5.5383 -2.0677 31 1 6.8603 -4.8092 -1.9218 32 1 5.7912 -3.5694 -1.2230 33 1 6.2109 -5.9738 1.5036 34 1 5.9823 -3.9728 -4.1479 35 1 4.7715 -2.9085 -3.3895 36 1 4.1049 -3.6041 -5.7010 37 1 2.9512 -4.1707 -4.4680 38 1 3.4618 -5.9920 -6.0511 39 1 5.2014 -5.8125 -5.7185 40 1 6.0301 -6.4357 -3.5212 41 1 4.8691 -7.0503 -2.3198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:22 Heat of formation + Delta-G solvation = -172.205408 kcal Electronic energy + Delta-G solvation = -28717.863966 eV Core-core repulsion = 24688.113819 eV Total energy + Delta-G solvation = -4029.750147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01192 -40.49623 -39.35397 -37.81754 -37.09636 -35.80103 -34.84589 -33.53038 -32.59809 -30.67887 -29.12563 -27.87181 -26.11298 -24.52945 -23.92202 -22.30515 -22.05056 -20.58380 -20.16000 -19.39331 -18.99055 -17.70094 -17.60201 -17.35324 -17.05329 -16.98496 -16.58150 -16.13225 -15.81921 -15.75494 -15.42224 -15.13663 -14.58262 -14.16354 -14.04468 -13.86817 -13.68863 -13.64436 -13.43336 -13.26115 -13.18573 -13.06168 -12.77873 -12.72675 -12.48286 -12.11595 -12.04888 -12.00381 -11.95122 -11.43199 -11.31801 -11.19994 -11.11376 -10.65231 -10.04290 -9.77178 -9.28534 -8.88359 -8.77239 -6.43369 0.29733 1.27610 1.33416 1.34585 1.35674 1.47767 1.77304 2.00479 2.14141 2.18784 2.55071 2.60268 3.00470 3.28194 3.61736 3.66799 3.88178 4.06206 4.13559 4.33518 4.39676 4.41624 4.46642 4.57482 4.68626 4.74947 4.82739 4.87530 4.96631 5.06222 5.07569 5.28745 5.30007 5.36341 5.40125 5.58595 5.66866 5.84720 5.91524 6.24922 6.42414 6.62460 6.77471 7.00347 7.04508 7.80095 8.17789 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.004670 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.109864 B = 5994.450634 C = 6242.820671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.268 1.268 5 H -0.254 1.254 6 H -0.263 1.263 7 C -0.420 4.420 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.126 4.126 11 C -0.199 4.199 12 S 0.003 5.997 13 C -0.448 4.448 14 C 0.600 3.400 15 O -0.584 6.584 16 N -0.709 5.709 17 C 0.160 3.840 18 C -0.128 4.128 19 C 0.480 3.520 20 O -0.528 6.528 21 O -0.518 6.518 22 C -0.130 4.130 23 C -0.149 4.149 24 C 0.060 3.940 25 O -0.394 6.394 26 C 0.061 3.939 27 H 0.296 0.704 28 H 0.139 0.861 29 H 0.173 0.827 30 H 0.395 0.605 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.423 0.577 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.903 -7.945 -5.756 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.193 1.193 5 H -0.178 1.178 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.159 4.159 11 C -0.333 4.333 12 S 0.260 5.740 13 C -0.566 4.566 14 C 0.395 3.605 15 O -0.469 6.469 16 N -0.360 5.360 17 C 0.073 3.927 18 C -0.166 4.166 19 C 0.323 3.677 20 O -0.418 6.418 21 O -0.331 6.331 22 C -0.168 4.168 23 C -0.187 4.187 24 C -0.016 4.016 25 O -0.313 6.313 26 C -0.016 4.016 27 H 0.107 0.893 28 H 0.156 0.844 29 H 0.191 0.809 30 H 0.229 0.771 31 H 0.167 0.833 32 H 0.124 0.876 33 H 0.284 0.716 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.877 -8.755 -6.600 14.757 hybrid contribution -0.493 1.782 1.307 2.264 sum 9.385 -6.974 -5.292 12.834 Atomic orbital electron populations 1.69637 1.08671 1.31370 1.34038 1.26953 0.95792 1.04552 0.90962 0.85088 0.79005 0.75479 0.79440 1.19273 1.17760 1.18659 1.19675 0.95425 0.90208 1.39862 0.90269 1.18372 0.91069 0.92420 0.87756 1.21650 0.96428 0.95996 1.01805 1.25452 1.03848 0.97938 1.06062 1.82666 1.11696 1.17971 1.61683 1.23443 1.04196 1.01289 1.27713 1.16803 0.84699 0.81997 0.77032 1.90571 1.54927 1.37641 1.63811 1.45558 1.15366 1.15203 1.59833 1.20818 0.82077 0.97832 0.91993 1.21892 1.02897 1.00961 0.90892 1.23577 0.78176 0.81561 0.84376 1.90678 1.31378 1.37347 1.82368 1.84494 1.57889 1.63584 1.27173 1.21986 1.00969 0.99444 0.94410 1.22091 0.98994 0.98660 0.98963 1.22772 1.03080 0.87916 0.87817 1.87956 1.57796 1.56717 1.28802 1.23056 0.94253 0.93595 0.90723 0.89318 0.84369 0.80928 0.77117 0.83343 0.87565 0.71613 0.87933 0.92104 0.89298 0.94367 0.87910 0.90329 0.88646 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.76 10.91 21.89 0.24 -40.52 16 2 C 0.04 1.78 5.47 85.37 0.47 2.24 16 3 Si 0.99 39.56 29.57 68.60 2.03 41.59 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.42 -23.59 8.24 23.34 0.19 -23.40 16 8 H 0.08 4.67 6.48 -2.91 -0.02 4.65 16 9 C 0.12 6.42 5.62 -20.89 -0.12 6.30 16 10 C -0.13 -6.38 9.04 22.61 0.20 -6.17 16 11 C -0.20 -8.77 11.07 66.64 0.74 -8.03 16 12 S 0.00 0.13 22.26 -56.49 -1.26 -1.13 16 13 C -0.45 -23.36 6.51 24.66 0.16 -23.20 16 14 C 0.60 29.07 7.09 86.32 0.61 29.68 16 15 O -0.58 -30.32 10.92 -4.55 -0.05 -30.37 16 16 N -0.71 -27.75 2.84 -426.83 -1.21 -28.96 16 17 C 0.16 4.79 0.27 3.69 0.00 4.79 16 18 C -0.13 -3.61 4.50 29.85 0.13 -3.47 16 19 C 0.48 14.61 7.81 71.23 0.56 15.16 16 20 O -0.53 -18.62 13.81 21.97 0.30 -18.32 16 21 O -0.52 -13.07 13.42 -51.42 -0.69 -13.76 16 22 C -0.13 -3.64 4.70 30.71 0.14 -3.49 16 23 C -0.15 -3.95 5.97 30.68 0.18 -3.76 16 24 C 0.06 1.28 6.84 72.01 0.49 1.78 16 25 O -0.39 -10.63 10.57 -148.98 -1.57 -12.20 16 26 C 0.06 1.51 5.31 72.01 0.38 1.89 16 27 H 0.30 13.24 8.29 -92.71 -0.77 12.47 16 28 H 0.14 7.03 6.60 -2.91 -0.02 7.01 16 29 H 0.17 6.20 8.06 -2.91 -0.02 6.18 16 30 H 0.39 15.95 7.47 -92.70 -0.69 15.26 16 31 H 0.15 2.71 8.14 -2.38 -0.02 2.69 16 32 H 0.11 3.71 6.26 -2.39 -0.01 3.69 16 33 H 0.42 7.19 9.10 -74.06 -0.67 6.52 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 2.21 6.24 -2.39 -0.01 2.19 16 36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.04 1.30 7.76 -2.39 -0.02 1.28 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 2.78 6.06 -2.39 -0.01 2.77 16 Total: -1.00 -69.86 345.24 1.68 -68.18 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -0.26 Total: 45.19 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.15 Total: -9.71 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.97 Total: -69.49 kcal Atomic # 8 Polarization: -72.63 SS G_CDS: -2.01 Total: -74.64 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.26 Total: -1.13 kcal Total: -69.86 1.68 -68.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.020 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds