Wall clock time and date at job start Tue Mar 31 2020 22:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86798 * 120.00184 * 2 1 4 4 H 1.48498 * 109.46824 * 267.63448 * 3 2 1 5 5 H 1.48497 * 109.47200 * 27.63189 * 3 2 1 6 6 H 1.48499 * 109.47102 * 147.63785 * 3 2 1 7 7 C 1.40310 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00126 * 352.96591 * 7 2 1 9 9 C 1.40542 * 119.99607 * 172.96643 * 7 2 1 10 10 C 1.44188 * 123.71837 * 322.13694 * 9 7 2 11 11 C 1.32759 * 114.43108 * 180.26017 * 10 9 7 12 12 S 1.75473 * 111.36386 * 359.53796 * 11 10 9 13 13 C 1.39548 * 123.71550 * 141.89633 * 9 7 2 14 14 C 1.46240 * 125.22546 * 359.97438 * 13 9 7 15 15 O 1.21759 * 119.99980 * 359.97438 * 14 13 9 16 16 N 1.34772 * 120.00025 * 180.02562 * 14 13 9 17 17 C 1.46501 * 120.00068 * 175.53386 * 16 14 13 18 18 C 1.53004 * 109.51932 * 302.91014 * 17 16 14 19 19 C 1.50697 * 109.47123 * 304.80452 * 18 17 16 20 20 O 1.20824 * 120.00387 * 6.23050 * 19 18 17 21 21 O 1.34231 * 120.00282 * 186.22303 * 19 18 17 22 22 C 1.53176 * 109.52787 * 63.10069 * 17 16 14 23 23 C 1.53176 * 109.03468 * 62.92313 * 22 17 16 24 24 C 1.53093 * 109.16302 * 56.98767 * 23 22 17 25 25 O 1.42908 * 109.40899 * 302.38736 * 24 23 22 26 26 C 1.42897 * 114.09838 * 61.15978 * 25 24 23 27 27 H 0.97000 * 119.99473 * 359.97438 * 1 2 3 28 28 H 1.08005 * 122.78189 * 0.05935 * 10 9 7 29 29 H 1.08002 * 124.32100 * 179.80126 * 11 10 9 30 30 H 0.96999 * 120.00035 * 355.52086 * 16 14 13 31 31 H 1.09001 * 109.47185 * 64.80918 * 18 17 16 32 32 H 1.09002 * 109.47032 * 184.80944 * 18 17 16 33 33 H 0.96693 * 117.00204 * 180.02562 * 21 19 18 34 34 H 1.08991 * 109.54523 * 182.79819 * 22 17 16 35 35 H 1.09001 * 109.54143 * 303.06012 * 22 17 16 36 36 H 1.08995 * 109.52479 * 297.07797 * 23 22 17 37 37 H 1.09006 * 109.57202 * 176.92216 * 23 22 17 38 38 H 1.08995 * 109.47809 * 182.40743 * 24 23 22 39 39 H 1.08991 * 109.48000 * 62.36941 * 24 23 22 40 40 H 1.09001 * 109.48126 * 178.85582 * 26 25 24 41 41 H 1.09008 * 109.47914 * 58.82198 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5380 2.0174 -1.3989 5 1 1.4138 2.6666 0.6493 6 1 3.5121 1.4550 0.7494 7 6 2.0079 -1.2152 0.0005 8 1 1.4740 -2.1468 0.1155 9 6 3.4054 -1.2198 -0.1485 10 6 4.1201 -0.3228 -1.0223 11 6 5.4370 -0.4915 -1.0244 12 16 5.9188 -1.7749 0.0709 13 6 4.2545 -2.0899 0.5366 14 6 3.8249 -3.1077 1.4947 15 8 2.6418 -3.2445 1.7480 16 7 4.7385 -3.8936 2.0981 17 6 4.3189 -4.8458 3.1294 18 6 3.5967 -4.0981 4.2521 19 6 4.4864 -3.0018 4.7788 20 8 5.5372 -2.7618 4.2330 21 8 4.1114 -2.2917 5.8545 22 6 3.3753 -5.8839 2.5143 23 6 4.1335 -6.6769 1.4454 24 6 5.3702 -7.3193 2.0791 25 8 6.1893 -6.3020 2.6592 26 6 5.5485 -5.5588 3.6980 27 1 -0.4849 0.8401 0.0004 28 1 3.6250 0.4222 -1.6275 29 1 6.1244 0.0900 -1.6208 30 1 5.6738 -3.8289 1.8494 31 1 2.6750 -3.6637 3.8650 32 1 3.3604 -4.7930 5.0580 33 1 4.7149 -1.5987 6.1552 34 1 3.0238 -6.5627 3.2913 35 1 2.5244 -5.3781 2.0580 36 1 4.4419 -6.0055 0.6441 37 1 3.4862 -7.4547 1.0401 38 1 5.9368 -7.8497 1.3137 39 1 5.0592 -8.0209 2.8530 40 1 6.2435 -4.8210 4.0989 41 1 5.2398 -6.2375 4.4932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:26 Heat of formation + Delta-G solvation = -146.237197 kcal Electronic energy + Delta-G solvation = -28801.052890 eV Core-core repulsion = 24772.428809 eV Total energy + Delta-G solvation = -4028.624081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76374 -39.29061 -37.87829 -36.29991 -35.84845 -34.44312 -33.20734 -32.35251 -31.22944 -29.10670 -27.99767 -26.37043 -25.06705 -23.24186 -22.13940 -21.02350 -20.91341 -18.93867 -18.78700 -17.85785 -17.78751 -16.39609 -16.31447 -16.03073 -15.82830 -15.42649 -15.27453 -14.88192 -14.59115 -14.29595 -13.86618 -13.60055 -13.33460 -13.09705 -12.66581 -12.62477 -12.47830 -12.32815 -12.02853 -11.94500 -11.90114 -11.48440 -11.32386 -11.27860 -10.94235 -10.83742 -10.75246 -10.38880 -10.36645 -10.10437 -10.07048 -9.66337 -9.45848 -9.36363 -8.41401 -8.21080 -7.63158 -7.27824 -7.00174 -4.50909 1.86046 2.49351 2.83850 2.94061 3.08975 3.14496 3.23111 3.44279 3.52056 3.80204 3.86157 4.09772 4.36334 4.73463 4.81788 4.96882 5.06671 5.12160 5.16460 5.35993 5.43547 5.45592 5.62818 5.69411 5.76818 5.80238 5.88101 6.08528 6.15083 6.21240 6.40892 6.54211 6.65223 6.73520 6.88269 6.93682 7.15318 7.17664 7.36342 7.66794 8.13779 8.33867 8.42823 8.57483 8.76877 9.51966 9.97482 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.004793 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.581303 B = 5839.846969 C = 6215.999901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.080 3.920 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.371 4.371 8 H 0.113 0.887 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.184 4.184 12 S -0.002 6.002 13 C -0.403 4.403 14 C 0.602 3.398 15 O -0.552 6.552 16 N -0.719 5.719 17 C 0.170 3.830 18 C -0.130 4.130 19 C 0.479 3.521 20 O -0.500 6.500 21 O -0.522 6.522 22 C -0.133 4.133 23 C -0.150 4.150 24 C 0.059 3.941 25 O -0.374 6.374 26 C 0.055 3.945 27 H 0.288 0.712 28 H 0.127 0.873 29 H 0.144 0.856 30 H 0.398 0.602 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.405 0.595 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -7.677 6.824 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.403 4.403 8 H 0.131 0.869 9 C 0.100 3.900 10 C -0.200 4.200 11 C -0.319 4.319 12 S 0.256 5.744 13 C -0.522 4.522 14 C 0.397 3.603 15 O -0.435 6.435 16 N -0.373 5.373 17 C 0.082 3.918 18 C -0.168 4.168 19 C 0.322 3.678 20 O -0.387 6.387 21 O -0.334 6.334 22 C -0.172 4.172 23 C -0.188 4.188 24 C -0.018 4.018 25 O -0.292 6.292 26 C -0.022 4.022 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.161 0.839 30 H 0.233 0.767 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.170 -8.521 7.078 13.764 hybrid contribution -0.524 2.005 -0.339 2.100 sum 7.646 -6.516 6.739 12.097 Atomic orbital electron populations 1.69545 1.08077 1.30495 1.33206 1.26300 0.94860 1.01519 0.91454 0.86484 0.81173 0.79869 0.79663 1.19049 1.20941 1.16768 1.19438 0.89245 0.95850 1.35741 0.86912 1.17973 0.93701 0.89288 0.88990 1.21570 0.93849 1.02423 1.02136 1.25009 0.98807 1.03640 1.04461 1.83055 1.10952 1.35553 1.44852 1.22865 0.92367 1.18600 1.18381 1.16756 0.84737 0.79453 0.79322 1.90653 1.16702 1.70602 1.65534 1.45646 1.11048 1.39946 1.40615 1.20424 0.94399 0.89240 0.87774 1.21895 1.01171 0.95161 0.98622 1.23407 0.85625 0.81940 0.76866 1.90702 1.24649 1.66699 1.56608 1.84537 1.54199 1.48829 1.45821 1.22025 0.99806 0.96764 0.98571 1.22100 0.97055 1.00168 0.99482 1.22632 0.92533 0.89613 0.97006 1.87966 1.39289 1.49237 1.52746 1.23024 0.94947 0.94768 0.89488 0.90071 0.85519 0.83864 0.76705 0.84558 0.87962 0.73670 0.91749 0.88152 0.90438 0.91059 0.89090 0.93504 0.87376 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.72 13.92 55.57 0.77 -19.95 16 2 C 0.08 2.07 5.52 -17.28 -0.10 1.98 16 3 Si 0.90 19.97 24.68 -169.99 -4.19 15.77 16 4 H -0.26 -5.47 6.62 56.52 0.37 -5.09 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.24 -5.64 6.83 56.52 0.39 -5.26 16 7 C -0.37 -10.19 8.67 -37.93 -0.33 -10.51 16 8 H 0.11 3.42 6.92 -52.49 -0.36 3.06 16 9 C 0.11 2.86 5.04 -106.21 -0.54 2.33 16 10 C -0.17 -3.76 7.49 -39.12 -0.29 -4.06 16 11 C -0.18 -3.73 11.07 28.86 0.32 -3.41 16 12 S 0.00 -0.05 22.26 -107.50 -2.39 -2.44 16 13 C -0.40 -9.80 6.51 -35.88 -0.23 -10.03 16 14 C 0.60 13.85 7.15 -13.05 -0.09 13.76 16 15 O -0.55 -13.85 11.01 5.14 0.06 -13.79 16 16 N -0.72 -13.55 2.73 -48.90 -0.13 -13.69 16 17 C 0.17 2.60 0.27 -131.68 -0.04 2.56 16 18 C -0.13 -1.93 4.54 -27.88 -0.13 -2.06 16 19 C 0.48 7.53 7.80 36.00 0.28 7.81 16 20 O -0.50 -8.93 13.92 -18.75 -0.26 -9.19 16 21 O -0.52 -6.88 13.42 -39.26 -0.53 -7.40 16 22 C -0.13 -1.93 4.69 -26.55 -0.12 -2.05 16 23 C -0.15 -2.01 5.97 -26.59 -0.16 -2.16 16 24 C 0.06 0.69 6.84 37.21 0.25 0.94 16 25 O -0.37 -5.28 10.58 -35.23 -0.37 -5.65 16 26 C 0.05 0.73 5.29 37.20 0.20 0.93 16 27 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 28 H 0.13 2.72 5.33 -52.48 -0.28 2.44 16 29 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 30 H 0.40 7.62 7.46 -40.82 -0.30 7.32 16 31 H 0.14 2.43 6.26 -51.93 -0.33 2.11 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 3.66 9.10 45.56 0.41 4.08 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.79 6.19 -51.93 -0.32 1.47 16 36 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 1.54 6.24 -51.93 -0.32 1.22 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -31.13 340.37 -6.94 -38.07 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -4.04 Total: 17.13 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.97 Total: -3.99 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.64 Total: -33.64 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -1.10 Total: -36.04 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.19 Total: 15.77 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.39 Total: -2.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.13 -6.94 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.168 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds