Wall clock time and date at job start Tue Mar 31 2020 22:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86798 * 120.00184 * 2 1 4 4 H 1.48498 * 109.46824 * 267.63448 * 3 2 1 5 5 H 1.48497 * 109.47200 * 27.63189 * 3 2 1 6 6 H 1.48499 * 109.47102 * 147.63785 * 3 2 1 7 7 C 1.40310 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00126 * 352.96591 * 7 2 1 9 9 C 1.40542 * 119.99607 * 172.96643 * 7 2 1 10 10 C 1.44188 * 123.71837 * 322.13694 * 9 7 2 11 11 C 1.32759 * 114.43108 * 180.26017 * 10 9 7 12 12 S 1.75473 * 111.36386 * 359.53796 * 11 10 9 13 13 C 1.39548 * 123.71550 * 141.89633 * 9 7 2 14 14 C 1.46240 * 125.22546 * 359.97438 * 13 9 7 15 15 O 1.21759 * 119.99980 * 359.97438 * 14 13 9 16 16 N 1.34772 * 120.00025 * 180.02562 * 14 13 9 17 17 C 1.46501 * 120.00068 * 175.53386 * 16 14 13 18 18 C 1.53004 * 109.51932 * 302.91014 * 17 16 14 19 19 C 1.50697 * 109.47123 * 304.80452 * 18 17 16 20 20 O 1.20824 * 120.00387 * 6.23050 * 19 18 17 21 21 O 1.34231 * 120.00282 * 186.22303 * 19 18 17 22 22 C 1.53176 * 109.52787 * 63.10069 * 17 16 14 23 23 C 1.53176 * 109.03468 * 62.92313 * 22 17 16 24 24 C 1.53093 * 109.16302 * 56.98767 * 23 22 17 25 25 O 1.42908 * 109.40899 * 302.38736 * 24 23 22 26 26 C 1.42897 * 114.09838 * 61.15978 * 25 24 23 27 27 H 0.97000 * 119.99473 * 359.97438 * 1 2 3 28 28 H 1.08005 * 122.78189 * 0.05935 * 10 9 7 29 29 H 1.08002 * 124.32100 * 179.80126 * 11 10 9 30 30 H 0.96999 * 120.00035 * 355.52086 * 16 14 13 31 31 H 1.09001 * 109.47185 * 64.80918 * 18 17 16 32 32 H 1.09002 * 109.47032 * 184.80944 * 18 17 16 33 33 H 0.96693 * 117.00204 * 180.02562 * 21 19 18 34 34 H 1.08991 * 109.54523 * 182.79819 * 22 17 16 35 35 H 1.09001 * 109.54143 * 303.06012 * 22 17 16 36 36 H 1.08995 * 109.52479 * 297.07797 * 23 22 17 37 37 H 1.09006 * 109.57202 * 176.92216 * 23 22 17 38 38 H 1.08995 * 109.47809 * 182.40743 * 24 23 22 39 39 H 1.08991 * 109.48000 * 62.36941 * 24 23 22 40 40 H 1.09001 * 109.48126 * 178.85582 * 26 25 24 41 41 H 1.09008 * 109.47914 * 58.82198 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5380 2.0174 -1.3989 5 1 1.4138 2.6666 0.6493 6 1 3.5121 1.4550 0.7494 7 6 2.0079 -1.2152 0.0005 8 1 1.4740 -2.1468 0.1155 9 6 3.4054 -1.2198 -0.1485 10 6 4.1201 -0.3228 -1.0223 11 6 5.4370 -0.4915 -1.0244 12 16 5.9188 -1.7749 0.0709 13 6 4.2545 -2.0899 0.5366 14 6 3.8249 -3.1077 1.4947 15 8 2.6418 -3.2445 1.7480 16 7 4.7385 -3.8936 2.0981 17 6 4.3189 -4.8458 3.1294 18 6 3.5967 -4.0981 4.2521 19 6 4.4864 -3.0018 4.7788 20 8 5.5372 -2.7618 4.2330 21 8 4.1114 -2.2917 5.8545 22 6 3.3753 -5.8839 2.5143 23 6 4.1335 -6.6769 1.4454 24 6 5.3702 -7.3193 2.0791 25 8 6.1893 -6.3020 2.6592 26 6 5.5485 -5.5588 3.6980 27 1 -0.4849 0.8401 0.0004 28 1 3.6250 0.4222 -1.6275 29 1 6.1244 0.0900 -1.6208 30 1 5.6738 -3.8289 1.8494 31 1 2.6750 -3.6637 3.8650 32 1 3.3604 -4.7930 5.0580 33 1 4.7149 -1.5987 6.1552 34 1 3.0238 -6.5627 3.2913 35 1 2.5244 -5.3781 2.0580 36 1 4.4419 -6.0055 0.6441 37 1 3.4862 -7.4547 1.0401 38 1 5.9368 -7.8497 1.3137 39 1 5.0592 -8.0209 2.8530 40 1 6.2435 -4.8210 4.0989 41 1 5.2398 -6.2375 4.4932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:25 Heat of formation + Delta-G solvation = -169.482110 kcal Electronic energy + Delta-G solvation = -28802.060865 eV Core-core repulsion = 24772.428809 eV Total energy + Delta-G solvation = -4029.632056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04416 -40.53240 -39.43460 -37.97253 -37.11260 -35.83971 -35.09997 -33.57115 -32.66386 -30.90282 -29.16908 -28.19310 -26.13842 -24.48169 -23.81526 -22.58240 -22.09586 -20.73799 -20.24119 -19.51729 -19.00998 -17.79090 -17.61645 -17.43598 -17.09928 -17.06429 -16.56662 -16.23874 -15.87695 -15.78546 -15.36327 -15.18060 -15.05538 -14.59467 -14.18842 -14.00412 -13.79874 -13.67098 -13.42982 -13.36497 -13.23455 -13.09463 -12.94252 -12.59002 -12.48544 -12.26456 -12.06030 -11.96274 -11.88045 -11.46216 -11.40468 -11.26824 -11.18850 -10.70439 -10.11338 -9.81501 -9.40784 -9.07520 -8.89688 -6.49368 0.07840 1.14132 1.18749 1.25019 1.32287 1.39783 1.57549 1.71056 2.07465 2.11181 2.48460 2.53637 2.97345 3.13420 3.57438 3.64572 3.85175 4.04143 4.12265 4.21376 4.33935 4.38052 4.44762 4.51370 4.56408 4.68185 4.72007 4.81007 4.86945 4.93161 5.05668 5.09915 5.17261 5.27976 5.32900 5.34117 5.63819 5.79514 5.84149 6.22001 6.27122 6.51716 6.66385 6.95113 7.02511 7.75079 8.14444 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.004793 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.581303 B = 5839.846969 C = 6215.999901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.042 3.958 3 Si 0.962 3.038 4 H -0.234 1.234 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.059 0.941 9 C 0.099 3.901 10 C -0.195 4.195 11 C -0.163 4.163 12 S 0.049 5.951 13 C -0.431 4.431 14 C 0.595 3.405 15 O -0.580 6.580 16 N -0.705 5.705 17 C 0.160 3.840 18 C -0.130 4.130 19 C 0.479 3.521 20 O -0.526 6.526 21 O -0.517 6.517 22 C -0.131 4.131 23 C -0.148 4.148 24 C 0.061 3.939 25 O -0.392 6.392 26 C 0.063 3.937 27 H 0.297 0.703 28 H 0.140 0.860 29 H 0.193 0.807 30 H 0.397 0.603 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.424 0.576 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 -7.992 7.650 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.158 1.158 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.447 4.447 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.228 4.228 11 C -0.298 4.298 12 S 0.308 5.692 13 C -0.550 4.550 14 C 0.389 3.611 15 O -0.465 6.465 16 N -0.356 5.356 17 C 0.073 3.927 18 C -0.168 4.168 19 C 0.323 3.677 20 O -0.415 6.415 21 O -0.331 6.331 22 C -0.169 4.169 23 C -0.186 4.186 24 C -0.015 4.015 25 O -0.310 6.310 26 C -0.014 4.014 27 H 0.108 0.892 28 H 0.157 0.843 29 H 0.210 0.790 30 H 0.232 0.768 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.285 0.715 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.195 -8.859 7.922 16.326 hybrid contribution -1.294 1.895 -0.489 2.346 sum 9.901 -6.964 7.432 14.205 Atomic orbital electron populations 1.69587 1.09346 1.31797 1.35476 1.27024 0.95554 1.04245 0.90568 0.85604 0.79081 0.75872 0.81129 1.15818 1.19753 1.18223 1.19162 0.90505 0.94779 1.40236 0.92259 1.18269 0.93324 0.90521 0.89194 1.21537 0.94723 1.03538 1.03034 1.25587 0.98655 1.02423 1.03177 1.82809 1.07369 1.35144 1.43886 1.23566 0.95229 1.18158 1.18049 1.16893 0.84868 0.79851 0.79502 1.90658 1.18122 1.71434 1.66251 1.45521 1.10063 1.39464 1.40545 1.20813 0.96002 0.88849 0.87004 1.21888 0.99335 0.95910 0.99716 1.23526 0.85199 0.82019 0.76986 1.90686 1.25814 1.67484 1.57538 1.84494 1.54617 1.49184 1.44791 1.21980 0.98264 0.96986 0.99713 1.22089 0.98395 0.99879 0.98258 1.22777 0.91362 0.89257 0.98133 1.87949 1.40032 1.49893 1.53139 1.23002 0.93298 0.95101 0.90018 0.89175 0.84287 0.78995 0.76831 0.88007 0.83552 0.71533 0.88048 0.92457 0.94097 0.89352 0.87616 0.90412 0.88298 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.58 13.92 21.89 0.30 -46.27 16 2 C 0.04 2.31 5.52 85.37 0.47 2.78 16 3 Si 0.96 41.50 24.68 68.60 1.69 43.19 16 4 H -0.23 -8.88 6.62 99.48 0.66 -8.22 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -11.59 6.83 99.48 0.68 -10.91 16 7 C -0.41 -24.42 8.67 23.34 0.20 -24.22 16 8 H 0.06 4.00 6.92 -2.92 -0.02 3.98 16 9 C 0.10 5.22 5.04 -20.89 -0.11 5.12 16 10 C -0.20 -8.63 7.49 22.61 0.17 -8.47 16 11 C -0.16 -6.11 11.07 66.64 0.74 -5.37 16 12 S 0.05 1.93 22.26 -56.49 -1.26 0.67 16 13 C -0.43 -21.46 6.51 24.67 0.16 -21.30 16 14 C 0.59 28.68 7.15 86.32 0.62 29.29 16 15 O -0.58 -31.43 11.01 -4.54 -0.05 -31.48 16 16 N -0.70 -26.94 2.73 -426.81 -1.16 -28.11 16 17 C 0.16 4.79 0.27 3.69 0.00 4.79 16 18 C -0.13 -3.79 4.54 29.85 0.14 -3.66 16 19 C 0.48 14.67 7.80 71.23 0.56 15.22 16 20 O -0.53 -18.41 13.92 21.97 0.31 -18.11 16 21 O -0.52 -12.97 13.42 -51.42 -0.69 -13.66 16 22 C -0.13 -3.73 4.69 30.71 0.14 -3.59 16 23 C -0.15 -3.83 5.97 30.68 0.18 -3.65 16 24 C 0.06 1.23 6.84 72.01 0.49 1.73 16 25 O -0.39 -10.01 10.58 -148.98 -1.58 -11.59 16 26 C 0.06 1.50 5.29 72.01 0.38 1.88 16 27 H 0.30 14.69 8.29 -92.71 -0.77 13.93 16 28 H 0.14 5.73 5.33 -2.91 -0.02 5.71 16 29 H 0.19 5.28 8.06 -2.91 -0.02 5.26 16 30 H 0.40 15.16 7.46 -92.71 -0.69 14.47 16 31 H 0.10 3.80 6.26 -2.39 -0.01 3.79 16 32 H 0.15 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.42 7.01 9.10 -74.06 -0.67 6.34 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.16 6.19 -2.39 -0.01 2.14 16 36 H 0.04 1.34 7.76 -2.39 -0.02 1.32 16 37 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 2.61 6.24 -2.39 -0.01 2.59 16 41 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -74.72 340.37 1.38 -73.33 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.33 Total: 41.45 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.15 Total: -9.43 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -0.86 Total: -74.38 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -2.01 Total: -74.83 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.69 Total: 43.19 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.26 Total: 0.67 kcal Total: -74.72 1.38 -73.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.150 kcal (2) G-P(sol) polarization free energy of solvation -74.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds