Wall clock time and date at job start Tue Mar 31 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48500 * 109.47142 * 274.66100 * 3 2 1 5 5 H 1.48503 * 109.47058 * 34.66184 * 3 2 1 6 6 H 1.48497 * 109.47170 * 154.66260 * 3 2 1 7 7 C 1.39952 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99887 * 162.23153 * 7 2 1 9 9 C 1.41390 * 120.00123 * 342.23687 * 7 2 1 10 10 C 1.40711 * 120.24649 * 155.28530 * 9 7 2 11 11 C 1.37616 * 119.74636 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24997 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.74992 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40005 * 336.45989 * 13 12 11 15 15 O 1.42102 * 106.39830 * 203.54156 * 13 12 11 16 16 N 1.65600 * 107.21594 * 90.00076 * 13 12 11 17 17 C 1.46498 * 120.00213 * 65.00142 * 16 13 12 18 18 C 1.53781 * 113.61532 * 144.99841 * 17 16 13 19 19 C 1.53774 * 87.08162 * 89.11650 * 18 17 16 20 20 C 1.52999 * 113.61642 * 139.98276 * 19 18 17 21 21 C 1.50700 * 109.47366 * 176.52870 * 20 19 18 22 22 O 1.20824 * 119.99784 * 359.97438 * 21 20 19 23 23 O 1.34231 * 119.99995 * 180.02562 * 21 20 19 24 24 C 1.53776 * 87.17480 * 25.39118 * 19 18 17 25 25 C 1.38632 * 120.49708 * 0.24973 * 12 11 10 26 26 C 1.37613 * 120.25143 * 359.44971 * 25 12 11 27 27 H 0.97003 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12363 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87808 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99739 * 244.99510 * 16 13 12 31 31 H 1.09006 * 112.84630 * 13.80060 * 17 16 13 32 32 H 1.09001 * 113.61550 * 334.56353 * 18 17 16 33 33 H 1.09002 * 113.61242 * 203.66472 * 18 17 16 34 34 H 1.09000 * 113.61458 * 270.80033 * 19 18 17 35 35 H 1.08999 * 109.47424 * 56.52194 * 20 19 18 36 36 H 1.09005 * 109.46720 * 296.52631 * 20 19 18 37 37 H 0.96697 * 116.99568 * 179.97438 * 23 21 20 38 38 H 1.08996 * 113.61903 * 89.15953 * 24 19 18 39 39 H 1.09002 * 113.61670 * 220.06647 * 24 19 18 40 40 H 1.07998 * 119.87175 * 179.70317 * 25 12 11 41 41 H 1.07999 * 120.13288 * 180.27565 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0493 -1.2345 -0.2849 9 6 1.3516 -2.4072 0.3746 10 6 1.8217 -3.6494 -0.0900 11 6 1.1747 -4.8061 0.2801 12 6 0.0633 -4.7508 1.1071 13 16 -0.7555 -6.2400 1.5722 14 8 -0.4427 -7.1992 0.5715 15 8 -2.0867 -5.8768 1.9116 16 7 -0.0456 -6.7737 2.9698 17 6 -0.1558 -5.9806 4.1966 18 6 -0.2589 -6.8317 5.4733 19 6 1.2775 -6.7976 5.5259 20 6 1.8388 -6.6270 6.9389 21 6 3.3437 -6.6912 6.8929 22 8 3.9093 -6.8570 5.8381 23 8 4.0558 -6.5653 8.0238 24 6 1.1997 -5.4834 4.7312 25 6 -0.4121 -3.5321 1.5661 26 6 0.2228 -2.3631 1.2139 27 1 -0.4850 0.8401 -0.0004 28 1 2.6871 -3.6947 -0.7346 29 1 1.5340 -5.7608 -0.0749 30 1 0.4432 -7.6116 2.9762 31 1 -0.9141 -5.2004 4.1295 32 1 -0.6680 -7.8275 5.3023 33 1 -0.7359 -6.3143 6.3056 34 1 1.7514 -7.6119 4.9777 35 1 1.4605 -7.4241 7.5789 36 1 1.5284 -5.6617 7.3390 37 1 5.0182 -6.6136 7.9441 38 1 1.1222 -4.5966 5.3602 39 1 1.9665 -5.3922 3.9619 40 1 -1.2815 -3.5004 2.2060 41 1 -0.1465 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:45 Heat of formation + Delta-G solvation = -142.989860 kcal Electronic energy + Delta-G solvation = -27036.879177 eV Core-core repulsion = 23008.395911 eV Total energy + Delta-G solvation = -4028.483266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60011 -39.12011 -37.55108 -36.46500 -36.27250 -35.11723 -34.02516 -33.17080 -30.24380 -29.98294 -29.44823 -25.84783 -25.64001 -24.09680 -21.54597 -21.34125 -21.09224 -19.68509 -18.75309 -18.17762 -17.60694 -17.20065 -16.73559 -16.48498 -16.18598 -15.73890 -15.50057 -14.71798 -14.45638 -14.18513 -14.02730 -13.55708 -13.37583 -13.21434 -12.89850 -12.48376 -12.41500 -12.17991 -12.07125 -11.74878 -11.70054 -11.67207 -11.44346 -11.37433 -11.29031 -11.20567 -11.01051 -10.85617 -10.77715 -10.50591 -10.41508 -10.21691 -9.74375 -9.61372 -9.47286 -9.03615 -7.93681 -7.68334 -7.12872 -4.78495 1.25682 2.04990 2.27468 2.84715 2.87755 2.89536 2.94400 2.96270 3.66302 3.70796 4.24530 4.40152 4.43273 4.54683 4.61815 4.83458 4.98992 5.16460 5.25040 5.27803 5.38566 5.41272 5.51882 5.67223 5.73780 6.00108 6.08339 6.10328 6.13751 6.23062 6.32375 6.54819 6.69609 6.72794 6.92558 7.06876 7.30413 7.36521 7.44854 7.64807 7.70891 7.78510 7.98819 8.33298 8.53007 8.66777 9.78710 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.003657 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.248226 B = 7654.334717 C = 9565.520324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.141 3.859 10 C -0.239 4.239 11 C 0.004 3.996 12 C -0.785 4.785 13 S 2.694 3.306 14 O -0.986 6.986 15 O -0.983 6.983 16 N -1.107 6.107 17 C 0.136 3.864 18 C -0.139 4.139 19 C -0.104 4.104 20 C -0.103 4.103 21 C 0.474 3.526 22 O -0.508 6.508 23 O -0.523 6.523 24 C -0.149 4.149 25 C -0.015 4.015 26 C -0.183 4.183 27 H 0.289 0.711 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.409 0.591 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.408 0.592 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -7.424 14.737 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.137 3.863 10 C -0.259 4.259 11 C -0.017 4.017 12 C -0.881 4.881 13 S 2.793 3.207 14 O -0.977 6.977 15 O -0.973 6.973 16 N -0.861 5.861 17 C 0.027 3.973 18 C -0.178 4.178 19 C -0.123 4.123 20 C -0.141 4.141 21 C 0.316 3.684 22 O -0.395 6.395 23 O -0.336 6.336 24 C -0.188 4.188 25 C -0.036 4.036 26 C -0.203 4.203 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.242 0.758 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.267 0.733 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.619 -7.590 14.030 16.033 hybrid contribution 1.817 0.988 -0.058 2.069 sum 3.436 -6.602 13.972 15.831 Atomic orbital electron populations 1.69828 1.07905 1.30336 1.30704 1.26129 0.94866 1.02078 0.91848 0.86165 0.80776 0.79696 0.79509 1.19112 1.19588 1.18029 1.19933 0.98485 0.91244 1.36758 0.89508 1.17840 0.90040 0.92085 0.86319 1.21021 1.04294 0.92844 1.07776 1.20150 0.91797 0.97385 0.92329 1.29105 1.18372 1.15347 1.25285 1.01220 0.73650 0.74185 0.71686 1.93493 1.85514 1.61871 1.56773 1.93489 1.35212 1.84813 1.83831 1.55583 1.72792 1.33250 1.24436 1.21448 0.97985 0.93760 0.84060 1.23394 0.94881 1.01407 0.98143 1.22506 0.95831 1.00533 0.93391 1.21439 0.86690 1.05700 1.00233 1.23654 0.91788 0.72008 0.80914 1.90761 1.72697 1.44464 1.31543 1.84539 1.25843 1.85076 1.38121 1.23572 0.98781 0.96293 1.00201 1.20231 0.95825 0.91787 0.95711 1.21318 0.99766 0.96873 1.02333 0.89985 0.88268 0.87879 0.75766 0.87620 0.90467 0.88718 0.88094 0.87655 0.87390 0.73309 0.89234 0.89780 0.87969 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.34 10.97 55.55 0.61 -17.73 16 2 C 0.07 1.68 5.14 -17.34 -0.09 1.60 16 3 Si 0.92 17.01 29.59 -169.99 -5.03 11.98 16 4 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.44 -10.75 9.05 -37.74 -0.34 -11.09 16 8 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.57 5.57 -106.83 -0.60 2.97 16 10 C -0.24 -5.70 9.80 -38.88 -0.38 -6.08 16 11 C 0.00 0.08 9.49 -39.66 -0.38 -0.30 16 12 C -0.78 -17.14 5.97 -39.29 -0.23 -17.38 16 13 S 2.69 51.39 5.70 -107.50 -0.61 50.78 16 14 O -0.99 -20.99 17.26 -57.17 -0.99 -21.98 16 15 O -0.98 -20.82 16.77 -57.17 -0.96 -21.78 16 16 N -1.11 -15.95 5.73 -4.12 -0.02 -15.97 16 17 C 0.14 1.72 4.51 -67.03 -0.30 1.42 16 18 C -0.14 -1.26 7.43 -25.92 -0.19 -1.45 16 19 C -0.10 -1.00 2.93 -89.81 -0.26 -1.27 16 20 C -0.10 -0.78 5.64 -27.88 -0.16 -0.93 16 21 C 0.47 4.67 8.33 36.01 0.30 4.97 16 22 O -0.51 -6.97 16.55 -18.75 -0.31 -7.28 16 23 O -0.52 -3.96 13.42 -39.26 -0.53 -4.49 16 24 C -0.15 -1.80 7.44 -25.83 -0.19 -1.99 16 25 C -0.02 -0.35 9.49 -39.66 -0.38 -0.72 16 26 C -0.18 -4.51 8.70 -38.87 -0.34 -4.85 16 27 H 0.29 6.19 8.30 -40.82 -0.34 5.86 16 28 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.10 2.12 7.60 -52.48 -0.40 1.73 16 30 H 0.41 5.03 8.79 -34.47 -0.30 4.73 16 31 H 0.11 1.40 7.77 -51.93 -0.40 1.00 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.67 8.10 -51.93 -0.42 0.24 16 34 H 0.10 1.08 7.70 -51.93 -0.40 0.68 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.66 7.88 -51.93 -0.41 0.26 16 37 H 0.41 1.61 9.10 45.56 0.41 2.02 16 38 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.10 2.13 7.59 -52.49 -0.40 1.73 16 41 H 0.12 3.02 6.18 -52.49 -0.32 2.70 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -33.18 364.10 -10.19 -43.37 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.29 Total: 12.71 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: -3.54 Total: -35.11 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.59 Total: -33.70 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -2.78 Total: -55.52 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.61 Total: 50.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.18 -10.19 -43.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.622 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds