Wall clock time and date at job start Tue Mar 31 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48500 * 109.47142 * 274.66100 * 3 2 1 5 5 H 1.48503 * 109.47058 * 34.66184 * 3 2 1 6 6 H 1.48497 * 109.47170 * 154.66260 * 3 2 1 7 7 C 1.39952 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99887 * 162.23153 * 7 2 1 9 9 C 1.41390 * 120.00123 * 342.23687 * 7 2 1 10 10 C 1.40711 * 120.24649 * 155.28530 * 9 7 2 11 11 C 1.37616 * 119.74636 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24997 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.74992 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40005 * 336.45989 * 13 12 11 15 15 O 1.42102 * 106.39830 * 203.54156 * 13 12 11 16 16 N 1.65600 * 107.21594 * 90.00076 * 13 12 11 17 17 C 1.46498 * 120.00213 * 65.00142 * 16 13 12 18 18 C 1.53781 * 113.61532 * 144.99841 * 17 16 13 19 19 C 1.53774 * 87.08162 * 89.11650 * 18 17 16 20 20 C 1.52999 * 113.61642 * 139.98276 * 19 18 17 21 21 C 1.50700 * 109.47366 * 176.52870 * 20 19 18 22 22 O 1.20824 * 119.99784 * 359.97438 * 21 20 19 23 23 O 1.34231 * 119.99995 * 180.02562 * 21 20 19 24 24 C 1.53776 * 87.17480 * 25.39118 * 19 18 17 25 25 C 1.38632 * 120.49708 * 0.24973 * 12 11 10 26 26 C 1.37613 * 120.25143 * 359.44971 * 25 12 11 27 27 H 0.97003 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12363 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87808 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99739 * 244.99510 * 16 13 12 31 31 H 1.09006 * 112.84630 * 13.80060 * 17 16 13 32 32 H 1.09001 * 113.61550 * 334.56353 * 18 17 16 33 33 H 1.09002 * 113.61242 * 203.66472 * 18 17 16 34 34 H 1.09000 * 113.61458 * 270.80033 * 19 18 17 35 35 H 1.08999 * 109.47424 * 56.52194 * 20 19 18 36 36 H 1.09005 * 109.46720 * 296.52631 * 20 19 18 37 37 H 0.96697 * 116.99568 * 179.97438 * 23 21 20 38 38 H 1.08996 * 113.61903 * 89.15953 * 24 19 18 39 39 H 1.09002 * 113.61670 * 220.06647 * 24 19 18 40 40 H 1.07998 * 119.87175 * 179.70317 * 25 12 11 41 41 H 1.07999 * 120.13288 * 180.27565 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0493 -1.2345 -0.2849 9 6 1.3516 -2.4072 0.3746 10 6 1.8217 -3.6494 -0.0900 11 6 1.1747 -4.8061 0.2801 12 6 0.0633 -4.7508 1.1071 13 16 -0.7555 -6.2400 1.5722 14 8 -0.4427 -7.1992 0.5715 15 8 -2.0867 -5.8768 1.9116 16 7 -0.0456 -6.7737 2.9698 17 6 -0.1558 -5.9806 4.1966 18 6 -0.2589 -6.8317 5.4733 19 6 1.2775 -6.7976 5.5259 20 6 1.8388 -6.6270 6.9389 21 6 3.3437 -6.6912 6.8929 22 8 3.9093 -6.8570 5.8381 23 8 4.0558 -6.5653 8.0238 24 6 1.1997 -5.4834 4.7312 25 6 -0.4121 -3.5321 1.5661 26 6 0.2228 -2.3631 1.2139 27 1 -0.4850 0.8401 -0.0004 28 1 2.6871 -3.6947 -0.7346 29 1 1.5340 -5.7608 -0.0749 30 1 0.4432 -7.6116 2.9762 31 1 -0.9141 -5.2004 4.1295 32 1 -0.6680 -7.8275 5.3023 33 1 -0.7359 -6.3143 6.3056 34 1 1.7514 -7.6119 4.9777 35 1 1.4605 -7.4241 7.5789 36 1 1.5284 -5.6617 7.3390 37 1 5.0182 -6.6136 7.9441 38 1 1.1222 -4.5966 5.3602 39 1 1.9665 -5.3922 3.9619 40 1 -1.2815 -3.5004 2.2060 41 1 -0.1465 -1.4151 1.5762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:45 Heat of formation + Delta-G solvation = -166.659143 kcal Electronic energy + Delta-G solvation = -27037.905554 eV Core-core repulsion = 23008.395911 eV Total energy + Delta-G solvation = -4029.509643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37048 -39.99076 -39.37060 -38.11864 -37.01330 -36.78692 -35.80418 -34.23511 -32.06731 -31.29181 -30.80763 -27.62431 -26.51522 -24.96259 -23.30502 -22.95659 -22.11508 -20.81503 -19.97309 -19.42562 -18.92774 -18.67306 -18.14928 -17.46352 -17.20634 -16.95864 -16.90384 -16.06517 -15.84554 -15.40333 -15.25632 -15.01973 -14.91890 -14.31170 -14.12995 -13.97444 -13.74177 -13.54758 -13.30908 -13.13461 -13.04330 -12.97677 -12.90355 -12.87283 -12.80763 -12.56880 -12.45727 -12.03749 -11.84349 -11.66544 -11.54582 -11.43887 -11.23845 -11.17219 -11.06233 -10.26991 -9.77522 -9.54390 -8.87182 -6.65075 -0.29995 0.49465 1.05882 1.32626 1.35158 1.41216 1.52104 2.11134 2.24289 2.26308 2.53241 2.94122 3.52827 3.54707 3.64645 3.70748 3.85688 3.99089 4.24966 4.29962 4.31732 4.39944 4.58981 4.70665 4.74056 4.85957 4.92469 4.94332 4.99061 5.09595 5.16010 5.24494 5.26384 5.27661 5.52453 5.59710 5.62794 5.72932 5.76450 5.92904 6.15639 6.21557 6.49008 6.68507 6.81250 7.07489 8.08335 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.003657 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.248226 B = 7654.334717 C = 9565.520324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.089 0.911 9 C 0.113 3.887 10 C -0.260 4.260 11 C -0.003 4.003 12 C -0.794 4.794 13 S 2.727 3.273 14 O -1.006 7.006 15 O -1.000 7.000 16 N -1.091 6.091 17 C 0.112 3.888 18 C -0.117 4.117 19 C -0.097 4.097 20 C -0.100 4.100 21 C 0.475 3.525 22 O -0.557 6.557 23 O -0.518 6.518 24 C -0.156 4.156 25 C -0.016 4.016 26 C -0.205 4.205 27 H 0.299 0.701 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.422 0.578 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.423 0.577 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.119 0.881 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -7.770 17.060 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.109 3.891 10 C -0.280 4.280 11 C -0.023 4.023 12 C -0.887 4.887 13 S 2.822 3.178 14 O -0.997 6.997 15 O -0.990 6.990 16 N -0.850 5.850 17 C 0.004 3.996 18 C -0.156 4.156 19 C -0.116 4.116 20 C -0.137 4.137 21 C 0.320 3.680 22 O -0.448 6.448 23 O -0.331 6.331 24 C -0.195 4.195 25 C -0.036 4.036 26 C -0.225 4.225 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.258 0.742 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.284 0.716 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.368 -7.925 16.362 18.231 hybrid contribution 1.895 0.975 -0.699 2.242 sum 3.262 -6.951 15.663 17.444 Atomic orbital electron populations 1.69857 1.09382 1.31867 1.30996 1.26998 0.95543 1.05130 0.90652 0.85053 0.79219 0.74973 0.79754 1.18449 1.18445 1.17871 1.20212 0.98883 0.92244 1.38314 0.89295 1.18183 0.90766 0.93057 0.87048 1.21241 1.05128 0.93119 1.08517 1.20421 0.91941 0.97737 0.92199 1.29639 1.17712 1.16812 1.24489 1.00243 0.72942 0.72687 0.71900 1.93459 1.85717 1.61837 1.58661 1.93465 1.36277 1.84947 1.84285 1.55100 1.72635 1.33646 1.23615 1.21831 0.98305 0.94753 0.84684 1.23363 0.94354 1.01501 0.96397 1.22380 0.96577 0.98276 0.94324 1.21523 0.84919 1.08026 0.99202 1.24151 0.92841 0.70547 0.80462 1.90756 1.73784 1.46971 1.33285 1.84508 1.27245 1.84357 1.37005 1.23628 0.97281 0.98516 1.00122 1.20443 0.96003 0.91646 0.95505 1.21341 1.00591 0.97219 1.03342 0.89007 0.87511 0.86176 0.74214 0.88266 0.89317 0.85642 0.89463 0.84472 0.85308 0.71596 0.87834 0.93321 0.86337 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.06 10.97 21.83 0.24 -38.82 16 2 C 0.04 1.69 5.14 85.26 0.44 2.13 16 3 Si 0.99 34.86 29.59 68.60 2.03 36.89 16 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 7 C -0.47 -23.91 9.05 23.46 0.21 -23.70 16 8 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 9 C 0.11 5.96 5.57 -21.29 -0.12 5.84 16 10 C -0.26 -12.87 9.80 22.73 0.22 -12.64 16 11 C 0.00 -0.15 9.49 22.22 0.21 0.06 16 12 C -0.79 -35.10 5.97 22.46 0.13 -34.96 16 13 S 2.73 102.47 5.70 -56.49 -0.32 102.15 16 14 O -1.01 -42.16 17.26 -128.00 -2.21 -44.37 16 15 O -1.00 -41.38 16.77 -128.00 -2.15 -43.53 16 16 N -1.09 -30.25 5.73 -166.95 -0.96 -31.20 16 17 C 0.11 2.66 4.51 45.58 0.21 2.87 16 18 C -0.12 -1.71 7.43 31.12 0.23 -1.48 16 19 C -0.10 -1.65 2.93 -10.27 -0.03 -1.68 16 20 C -0.10 -1.17 5.64 29.85 0.17 -1.00 16 21 C 0.48 8.54 8.33 71.24 0.59 9.13 16 22 O -0.56 -15.19 16.55 21.97 0.36 -14.82 16 23 O -0.52 -6.70 13.42 -51.42 -0.69 -7.39 16 24 C -0.16 -3.64 7.44 31.18 0.23 -3.41 16 25 C -0.02 -0.74 9.49 22.22 0.21 -0.53 16 26 C -0.20 -10.50 8.70 22.73 0.20 -10.31 16 27 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 28 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.12 5.00 7.60 -2.91 -0.02 4.97 16 30 H 0.42 9.81 8.79 -96.75 -0.85 8.96 16 31 H 0.10 2.50 7.77 -2.38 -0.02 2.48 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.13 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.09 1.75 7.70 -2.39 -0.02 1.73 16 35 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 1.05 7.88 -2.38 -0.02 1.03 16 37 H 0.42 2.64 9.10 -74.06 -0.67 1.96 16 38 H 0.10 2.07 7.92 -2.39 -0.02 2.05 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.12 4.98 7.59 -2.91 -0.02 4.96 16 41 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 Total: -1.00 -73.92 364.10 -1.22 -75.13 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.43 Total: 35.66 kcal Atomic # 6 Polarization: -72.59 SS G_CDS: 2.91 Total: -69.68 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -0.72 Total: -70.03 kcal Atomic # 8 Polarization: -105.43 SS G_CDS: -4.68 Total: -110.11 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 102.47 SS G_CDS: -0.32 Total: 102.15 kcal Total: -73.92 -1.22 -75.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.528 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds