Wall clock time and date at job start Tue Mar 31 2020 23:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47268 * 101.31707 * 3 2 1 5 5 C 1.36803 * 120.00008 * 264.65441 * 4 3 2 6 6 H 1.08003 * 120.00221 * 188.90550 * 5 4 3 7 7 C 1.39089 * 120.00062 * 8.90661 * 5 4 3 8 8 N 1.31342 * 119.99848 * 31.27756 * 7 5 4 9 9 Si 1.86802 * 119.99925 * 211.27517 * 7 5 4 10 10 H 1.48501 * 109.46867 * 94.99836 * 9 7 5 11 11 H 1.48498 * 109.46941 * 214.99530 * 9 7 5 12 12 H 1.48503 * 109.47412 * 334.99794 * 9 7 5 13 13 C 1.34780 * 119.99860 * 84.65144 * 4 3 2 14 14 O 1.21646 * 120.00029 * 4.13863 * 13 4 3 15 15 C 1.47321 * 119.99702 * 184.13753 * 13 4 3 16 16 C 1.39914 * 120.04704 * 305.80736 * 15 13 4 17 17 C 1.36429 * 120.18901 * 180.02562 * 16 15 13 18 18 C 1.39964 * 120.28190 * 359.97438 * 17 16 15 19 19 C 1.47563 * 119.95778 * 180.02562 * 18 17 16 20 20 C 1.37769 * 125.72065 * 359.97276 * 19 18 17 21 21 C 1.39608 * 106.98482 * 180.02562 * 20 19 18 22 22 C 1.38281 * 106.80390 * 359.97438 * 21 20 19 23 23 C 1.41255 * 125.88251 * 180.02562 * 22 21 20 24 24 O 1.21461 * 119.99964 * 180.02562 * 23 22 21 25 25 O 1.34352 * 125.71781 * 179.66778 * 19 18 17 26 26 C 1.39589 * 120.07901 * 0.02562 * 18 17 16 27 27 C 1.38360 * 119.81351 * 0.25922 * 26 18 17 28 28 O 1.35682 * 120.13686 * 179.72548 * 27 26 18 29 29 H 4.40644 * 5.51340 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47231 * 341.31071 * 3 2 1 31 31 H 1.09002 * 109.46534 * 221.31910 * 3 2 1 32 32 H 0.96995 * 119.99776 * 180.02562 * 8 7 5 33 33 H 1.08004 * 119.90189 * 0.04420 * 16 15 13 34 34 H 1.08009 * 119.85505 * 179.97438 * 17 16 15 35 35 H 1.08000 * 126.50721 * 0.03924 * 20 19 18 36 36 H 1.07996 * 126.59766 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99967 * 0.02562 * 23 22 21 38 38 H 1.08000 * 120.09009 * 179.97438 * 26 18 17 39 39 H 0.96701 * 114.00714 * 89.99520 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2719 -1.3543 5 6 3.4668 -0.7653 -2.1820 6 1 3.9599 -0.5688 -3.1226 7 6 3.1698 -2.0728 -1.8123 8 7 2.1116 -2.3227 -1.0756 9 14 4.2761 -3.4735 -2.3637 10 1 5.2653 -3.7722 -1.2972 11 1 3.4522 -4.6806 -2.6269 12 1 4.9901 -3.0810 -3.6053 13 6 3.2557 1.5433 -1.7848 14 8 3.0323 2.4667 -1.0250 15 6 3.6592 1.8147 -3.1754 16 6 4.8325 1.2500 -3.6874 17 6 5.2092 1.4998 -4.9746 18 6 4.4252 2.3217 -5.7925 19 6 4.8391 2.5867 -7.1839 20 6 5.9688 2.0892 -7.7957 21 6 5.9774 2.5844 -9.1009 22 6 4.8471 3.3690 -9.2383 23 6 4.4599 4.0663 -10.4041 24 8 3.4410 4.7275 -10.4061 25 8 4.1743 3.3489 -8.0683 26 6 3.2525 2.8911 -5.2935 27 6 2.8702 2.6449 -3.9868 28 8 1.7344 3.1994 -3.4933 29 1 -1.0501 0.0002 0.0002 30 1 3.0098 -0.9727 0.3293 31 1 3.0089 0.7727 0.6786 32 1 1.9048 -3.2345 -0.8175 33 1 5.4416 0.6143 -3.0617 34 1 6.1162 1.0614 -5.3642 35 1 6.7074 1.4393 -7.3501 36 1 6.7234 2.3918 -9.8578 37 1 5.0699 4.0116 -11.2937 38 1 2.6477 3.5256 -5.9244 39 1 0.9447 2.6554 -3.6178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625878014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:20 Heat of formation + Delta-G solvation = -8.285158 kcal Electronic energy + Delta-G solvation = -27973.498977 eV Core-core repulsion = 23815.412994 eV Total energy + Delta-G solvation = -4158.085983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63741 -41.41292 -39.86241 -39.61073 -37.89008 -36.97239 -34.36106 -34.02709 -33.72337 -32.87819 -31.29296 -30.32286 -28.43140 -27.01950 -25.79583 -24.05976 -23.52283 -22.43921 -21.53014 -21.20174 -20.12879 -19.43748 -18.74305 -18.24517 -18.00074 -17.41742 -17.16519 -16.94238 -16.63595 -16.45952 -16.29649 -15.73375 -15.61423 -15.30277 -15.01613 -14.80510 -14.27530 -14.12744 -14.01831 -13.89498 -13.86944 -13.65305 -13.44568 -13.40033 -12.83342 -12.65353 -12.32075 -12.06051 -11.76928 -11.33971 -11.19021 -11.13357 -11.08223 -10.72649 -10.59352 -10.36195 -9.97058 -9.85618 -8.97464 -8.40390 -5.84341 -0.83176 0.12945 0.23205 1.27576 1.43937 1.53145 1.63134 1.66009 1.78224 2.02026 2.08545 2.28324 2.35408 2.61256 3.01253 3.04914 3.07303 3.38851 3.66845 3.81593 3.85434 3.89004 4.06557 4.12146 4.25904 4.38749 4.44590 4.60988 4.74562 4.77258 4.83281 4.85475 4.90531 5.09569 5.24041 5.29995 5.33960 5.43164 5.48316 5.62566 5.64960 5.83217 6.33842 6.51173 6.64819 7.02154 7.05898 7.45576 7.88507 8.61643 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.003200 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.766781 B = 8747.783908 C = 9958.516330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.160 4.160 3 C 0.235 3.765 4 N -0.424 5.424 5 C -0.381 4.381 6 H 0.128 0.872 7 C 0.008 3.992 8 N -0.860 5.860 9 Si 0.977 3.023 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.247 1.247 13 C 0.475 3.525 14 O -0.630 6.630 15 C -0.116 4.116 16 C -0.071 4.071 17 C -0.087 4.087 18 C -0.017 4.017 19 C 0.053 3.947 20 C -0.198 4.198 21 C -0.083 4.083 22 C -0.166 4.166 23 C 0.415 3.585 24 O -0.518 6.518 25 O -0.176 6.176 26 C -0.134 4.134 27 C 0.123 3.877 28 O -0.501 6.501 29 H 0.238 0.762 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.273 0.727 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.217 0.783 37 H 0.202 0.798 38 H 0.135 0.865 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.179 0.776 -16.394 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.161 4.161 3 C 0.113 3.887 4 N -0.139 5.139 5 C -0.507 4.507 6 H 0.145 0.855 7 C -0.198 4.198 8 N -0.495 5.495 9 Si 0.800 3.200 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.171 1.171 13 C 0.266 3.734 14 O -0.520 6.520 15 C -0.120 4.120 16 C -0.090 4.090 17 C -0.105 4.105 18 C -0.018 4.018 19 C 0.000 4.000 20 C -0.217 4.217 21 C -0.102 4.102 22 C -0.215 4.215 23 C 0.279 3.721 24 O -0.396 6.396 25 O -0.073 6.073 26 C -0.153 4.153 27 C 0.078 3.922 28 O -0.313 6.313 29 H 0.255 0.745 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.197 0.803 35 H 0.211 0.789 36 H 0.234 0.766 37 H 0.218 0.782 38 H 0.153 0.847 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 10.525 1.989 -15.713 19.016 hybrid contribution -0.946 -1.110 0.473 1.533 sum 9.579 0.879 -15.239 18.021 Atomic orbital electron populations 1.25210 0.96400 1.04269 1.00395 1.23556 0.95217 0.97356 0.99983 1.18130 0.84698 1.01136 0.84755 1.43932 1.53472 1.04905 1.11633 1.20392 1.39881 0.84719 1.05663 0.85453 1.26134 0.95725 1.00848 0.97115 1.70330 1.20935 1.22259 1.35948 0.85157 0.78451 0.76678 0.79706 1.19719 1.21701 1.17050 1.18243 0.84551 0.82709 0.87885 1.90640 1.58932 1.44990 1.57389 1.20528 0.98498 0.98478 0.94466 1.21102 0.94474 0.97182 0.96194 1.21029 1.00472 0.96950 0.92037 1.17848 0.95284 0.99485 0.89152 1.21389 0.93668 0.95397 0.89519 1.22538 0.98663 1.05244 0.95247 1.22974 0.96283 0.93271 0.97713 1.23329 0.98267 1.11263 0.88650 1.23194 0.85531 0.74266 0.89112 1.90651 1.27101 1.35732 1.86104 1.84185 1.46494 1.55611 1.20972 1.21433 0.98436 1.01660 0.93728 1.18411 0.89153 0.93853 0.90826 1.84743 1.17082 1.47317 1.82121 0.74521 0.87718 0.91492 0.91656 0.82879 0.80346 0.78930 0.76637 0.78247 0.84719 0.74294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.71 19.25 74.32 1.43 -9.28 16 2 C -0.16 -7.87 11.94 31.13 0.37 -7.50 16 3 C 0.24 11.57 5.11 84.58 0.43 12.00 16 4 N -0.42 -21.05 2.59 -649.27 -1.68 -22.73 16 5 C -0.38 -17.86 8.63 84.12 0.73 -17.13 16 6 H 0.13 5.49 4.71 -2.91 -0.01 5.48 16 7 C 0.01 0.38 4.70 84.97 0.40 0.78 16 8 N -0.86 -42.20 9.88 21.69 0.21 -41.99 16 9 Si 0.98 35.35 29.65 68.60 2.03 37.38 16 10 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 11 H -0.29 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 13 C 0.48 23.91 6.74 86.63 0.58 24.49 16 14 O -0.63 -36.00 16.38 -0.47 -0.01 -36.01 16 15 C -0.12 -4.91 5.06 -19.97 -0.10 -5.01 16 16 C -0.07 -2.37 7.38 22.25 0.16 -2.20 16 17 C -0.09 -2.25 9.49 22.27 0.21 -2.04 16 18 C -0.02 -0.49 5.88 -20.07 -0.12 -0.60 16 19 C 0.05 1.29 7.05 24.62 0.17 1.47 16 20 C -0.20 -3.05 10.25 22.49 0.23 -2.82 16 21 C -0.08 -0.92 10.86 22.61 0.25 -0.67 16 22 C -0.17 -3.09 6.95 23.02 0.16 -2.93 16 23 C 0.41 6.33 11.39 68.56 0.78 7.11 16 24 O -0.52 -14.19 17.89 6.66 0.12 -14.07 16 25 O -0.18 -4.88 10.35 0.56 0.01 -4.87 16 26 C -0.13 -4.55 9.65 22.63 0.22 -4.33 16 27 C 0.12 4.94 6.70 22.82 0.15 5.09 16 28 O -0.50 -20.71 12.68 -86.29 -1.09 -21.80 16 29 H 0.24 7.99 7.80 -4.42 -0.03 7.96 16 30 H 0.11 5.11 6.16 -2.38 -0.01 5.10 16 31 H 0.07 3.26 7.53 -2.39 -0.02 3.24 16 32 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 33 H 0.15 4.83 7.17 -2.91 -0.02 4.81 16 34 H 0.18 2.84 6.94 -2.91 -0.02 2.82 16 35 H 0.19 1.69 7.24 -2.91 -0.02 1.67 16 36 H 0.22 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.20 0.23 8.06 -2.91 -0.02 0.20 16 38 H 0.13 4.41 7.88 -2.91 -0.02 4.39 16 39 H 0.40 13.53 9.06 -74.06 -0.67 12.86 16 Total: -1.00 -79.83 356.66 6.12 -73.72 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.47 Total: 33.96 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.06 Total: -3.59 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -1.47 Total: -64.72 kcal Atomic # 8 Polarization: -75.77 SS G_CDS: -0.98 Total: -76.75 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -79.83 6.12 -73.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625878014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.432 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds