Wall clock time and date at job start Tue Mar 31 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99992 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47168 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.53646 * 54.99920 * 15 14 12 17 17 C 1.53822 * 109.53787 * 175.15666 * 15 14 12 18 18 S 1.82081 * 106.86519 * 185.56856 * 17 15 14 19 19 O 1.42101 * 110.79008 * 206.00138 * 18 17 15 20 20 O 1.42098 * 110.74132 * 68.52430 * 18 17 15 21 21 C 1.76710 * 102.94530 * 317.27364 * 18 17 15 22 22 C 1.38236 * 119.07354 * 192.53009 * 21 18 17 23 23 C 1.38167 * 120.28462 * 181.33890 * 22 21 18 24 24 C 1.38296 * 119.67248 * 0.02562 * 23 22 21 25 25 C 1.37782 * 120.17323 * 359.62943 * 24 23 22 26 26 C 1.38426 * 120.41547 * 13.17170 * 21 18 17 27 27 O 1.35151 * 123.57490 * 358.11920 * 26 21 18 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 30 30 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 31 31 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 32 32 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 33 33 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 34 34 H 1.09002 * 109.47054 * 300.00278 * 14 12 11 35 35 H 1.08998 * 109.47224 * 60.00790 * 14 12 11 36 36 H 1.08997 * 109.97661 * 304.96690 * 17 15 14 37 37 H 1.08998 * 109.97621 * 66.29674 * 17 15 14 38 38 H 1.08001 * 119.85859 * 1.35368 * 22 21 18 39 39 H 1.07997 * 120.16335 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.91308 * 179.63619 * 24 23 22 41 41 H 1.08001 * 119.74069 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.3994 -6.0981 -0.0007 14 6 1.4331 -7.4031 -0.0003 15 6 2.4273 -8.5661 -0.0002 16 1 3.1120 -8.4602 0.8414 17 6 1.6636 -9.8957 0.1223 18 16 2.9135 -11.2098 0.2840 19 8 2.4036 -12.4512 -0.1832 20 8 3.5876 -11.1125 1.5311 21 6 4.1284 -10.7502 -0.9141 22 6 5.1092 -11.6610 -1.2597 23 6 6.0877 -11.3183 -2.1730 24 6 6.0825 -10.0574 -2.7411 25 6 5.1021 -9.1499 -2.4039 26 6 4.1054 -9.4907 -1.4879 27 8 3.1628 -8.5617 -1.2139 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6240 -2.5568 -0.8903 31 1 2.8719 -3.6044 -0.8906 32 1 2.8719 -3.6044 0.8894 33 1 0.5428 -4.9308 0.0000 34 1 0.8067 -7.4609 0.8899 35 1 0.8062 -7.4608 -0.8901 36 1 1.0243 -9.8781 1.0049 37 1 1.0621 -10.0633 -0.7711 38 1 5.1105 -12.6448 -0.8141 39 1 6.8527 -12.0315 -2.4419 40 1 6.8489 -9.7834 -3.4510 41 1 5.1045 -8.1673 -2.8521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633911353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:04 Heat of formation + Delta-G solvation = -116.869471 kcal Electronic energy + Delta-G solvation = -26597.838051 eV Core-core repulsion = 22570.487450 eV Total energy + Delta-G solvation = -4027.350601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88667 -39.39127 -38.14527 -37.42880 -36.36361 -34.97595 -33.82809 -32.89259 -31.63562 -30.35581 -30.17239 -28.54456 -24.99717 -24.18490 -23.26859 -22.11259 -21.03175 -20.24398 -19.52425 -18.90821 -17.77510 -17.42082 -16.84406 -16.43788 -16.16404 -15.91270 -15.56940 -15.42197 -15.24484 -14.96633 -14.57094 -14.48261 -14.25990 -13.56872 -13.48734 -13.35815 -12.84602 -12.83029 -12.55280 -12.52098 -12.41185 -12.31994 -12.12546 -11.93972 -11.46055 -11.26954 -11.09736 -11.05556 -10.83649 -10.70104 -10.38205 -9.89895 -9.74994 -9.53730 -9.26996 -8.74117 -8.61560 -8.41775 -6.13970 -4.17007 -0.42978 0.49954 0.96385 2.27866 2.41443 2.87912 3.10295 3.13305 3.28088 3.31917 3.32953 3.37366 3.67270 3.98666 4.17524 4.30393 4.36745 4.41028 4.59679 4.63781 4.83350 4.90539 4.93468 5.02180 5.13922 5.19686 5.23201 5.35880 5.47481 5.62125 5.78098 6.04104 6.25871 6.28033 6.29033 6.67047 6.81481 7.03815 7.45122 7.55332 7.83515 7.89382 8.22003 8.52638 8.88705 9.48097 10.97556 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.002241 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.901985 B =12493.044411 C =13409.490016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.721 5.721 12 C 0.504 3.496 13 O -0.539 6.539 14 C -0.132 4.132 15 C 0.126 3.874 16 H 0.104 0.896 17 C -0.646 4.646 18 S 2.495 3.505 19 O -0.929 6.929 20 O -0.924 6.924 21 C -0.720 4.720 22 C 0.006 3.994 23 C -0.168 4.168 24 C -0.037 4.037 25 C -0.157 4.157 26 C 0.225 3.775 27 O -0.297 6.297 28 H 0.263 0.737 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.398 0.602 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -24.730 -3.121 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.001 4.001 11 N -0.371 5.371 12 C 0.289 3.711 13 O -0.417 6.417 14 C -0.173 4.173 15 C 0.069 3.931 16 H 0.122 0.878 17 C -0.775 4.775 18 S 2.675 3.325 19 O -0.926 6.926 20 O -0.922 6.922 21 C -0.808 4.808 22 C -0.013 4.013 23 C -0.187 4.187 24 C -0.055 4.055 25 C -0.176 4.176 26 C 0.177 3.823 27 O -0.209 6.209 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.468 -25.152 -2.674 25.685 hybrid contribution -0.141 1.482 -0.468 1.561 sum 4.327 -23.669 -3.142 24.266 Atomic orbital electron populations 1.69940 1.06099 1.27047 1.50222 1.24997 0.94902 0.99436 0.94920 0.86564 0.79521 0.82595 0.78807 1.21221 1.20085 1.20100 1.21009 0.93216 0.90397 1.51588 0.92303 1.19317 0.94179 0.91119 0.97820 1.21740 0.96059 0.81388 1.00863 1.46309 1.10548 1.06528 1.73748 1.20235 0.88314 0.85299 0.77300 1.90721 1.13700 1.87562 1.49697 1.21778 0.97869 0.91130 1.06505 1.21948 0.92367 0.91955 0.86843 0.87844 1.31159 1.17430 1.14689 1.14223 1.05531 0.76116 0.76046 0.74833 1.93608 1.80011 1.37592 1.81355 1.93643 1.71763 1.86484 1.40261 1.30061 1.21909 1.02742 1.26109 1.20483 0.90508 0.96950 0.93351 1.21170 1.00347 0.97581 0.99553 1.21224 0.95967 0.92482 0.95856 1.20965 0.93693 1.01621 1.01357 1.18332 0.86651 0.85105 0.92222 1.85403 1.47903 1.49223 1.38411 0.92750 0.95955 0.95953 0.92499 0.92494 0.76823 0.86023 0.87044 0.82181 0.82688 0.84783 0.84732 0.84488 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 11 N -0.72 -11.30 5.56 -60.29 -0.33 -11.63 16 12 C 0.50 7.46 7.71 -10.98 -0.08 7.37 16 13 O -0.54 -10.17 15.43 -8.85 -0.14 -10.30 16 14 C -0.13 -1.20 5.42 -27.89 -0.15 -1.35 16 15 C 0.13 1.25 2.22 -26.30 -0.06 1.19 16 16 H 0.10 1.11 7.94 -51.93 -0.41 0.69 16 17 C -0.65 -4.15 6.14 37.59 0.23 -3.92 16 18 S 2.50 24.24 5.39 -107.50 -0.58 23.66 16 19 O -0.93 -10.89 17.84 -57.50 -1.03 -11.92 16 20 O -0.92 -11.72 17.96 -57.50 -1.03 -12.76 16 21 C -0.72 -7.91 5.70 -39.51 -0.23 -8.13 16 22 C 0.01 0.06 9.57 -39.61 -0.38 -0.32 16 23 C -0.17 -1.42 10.07 -39.59 -0.40 -1.82 16 24 C -0.04 -0.32 10.02 -39.73 -0.40 -0.72 16 25 C -0.16 -1.71 9.90 -39.24 -0.39 -2.10 16 26 C 0.22 2.65 6.52 -39.01 -0.25 2.39 16 27 O -0.30 -3.57 8.70 -31.55 -0.27 -3.84 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 29 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 5.15 8.47 -40.82 -0.35 4.81 16 34 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.16 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.16 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -37.27 363.40 -10.25 -47.52 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.37 Total: 0.45 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.68 Total: -17.78 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.40 Total: -36.54 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -2.47 Total: -38.82 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 24.24 SS G_CDS: -0.58 Total: 23.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.27 -10.25 -47.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633911353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.353 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds