Wall clock time and date at job start Tue Mar 31 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99992 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47168 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.53646 * 54.99920 * 15 14 12 17 17 C 1.53822 * 109.53787 * 175.15666 * 15 14 12 18 18 S 1.82081 * 106.86519 * 185.56856 * 17 15 14 19 19 O 1.42101 * 110.79008 * 206.00138 * 18 17 15 20 20 O 1.42098 * 110.74132 * 68.52430 * 18 17 15 21 21 C 1.76710 * 102.94530 * 317.27364 * 18 17 15 22 22 C 1.38236 * 119.07354 * 192.53009 * 21 18 17 23 23 C 1.38167 * 120.28462 * 181.33890 * 22 21 18 24 24 C 1.38296 * 119.67248 * 0.02562 * 23 22 21 25 25 C 1.37782 * 120.17323 * 359.62943 * 24 23 22 26 26 C 1.38426 * 120.41547 * 13.17170 * 21 18 17 27 27 O 1.35151 * 123.57490 * 358.11920 * 26 21 18 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 30 30 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 31 31 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 32 32 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 33 33 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 34 34 H 1.09002 * 109.47054 * 300.00278 * 14 12 11 35 35 H 1.08998 * 109.47224 * 60.00790 * 14 12 11 36 36 H 1.08997 * 109.97661 * 304.96690 * 17 15 14 37 37 H 1.08998 * 109.97621 * 66.29674 * 17 15 14 38 38 H 1.08001 * 119.85859 * 1.35368 * 22 21 18 39 39 H 1.07997 * 120.16335 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.91308 * 179.63619 * 24 23 22 41 41 H 1.08001 * 119.74069 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.3994 -6.0981 -0.0007 14 6 1.4331 -7.4031 -0.0003 15 6 2.4273 -8.5661 -0.0002 16 1 3.1120 -8.4602 0.8414 17 6 1.6636 -9.8957 0.1223 18 16 2.9135 -11.2098 0.2840 19 8 2.4036 -12.4512 -0.1832 20 8 3.5876 -11.1125 1.5311 21 6 4.1284 -10.7502 -0.9141 22 6 5.1092 -11.6610 -1.2597 23 6 6.0877 -11.3183 -2.1730 24 6 6.0825 -10.0574 -2.7411 25 6 5.1021 -9.1499 -2.4039 26 6 4.1054 -9.4907 -1.4879 27 8 3.1628 -8.5617 -1.2139 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6240 -2.5568 -0.8903 31 1 2.8719 -3.6044 -0.8906 32 1 2.8719 -3.6044 0.8894 33 1 0.5428 -4.9308 0.0000 34 1 0.8067 -7.4609 0.8899 35 1 0.8062 -7.4608 -0.8901 36 1 1.0243 -9.8781 1.0049 37 1 1.0621 -10.0633 -0.7711 38 1 5.1105 -12.6448 -0.8141 39 1 6.8527 -12.0315 -2.4419 40 1 6.8489 -9.7834 -3.4510 41 1 5.1045 -8.1673 -2.8521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633911353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:04 Heat of formation + Delta-G solvation = -145.033438 kcal Electronic energy + Delta-G solvation = -26599.059332 eV Core-core repulsion = 22570.487450 eV Total energy + Delta-G solvation = -4028.571882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68573 -40.52255 -38.95659 -38.25526 -37.19410 -36.56936 -34.81506 -34.58057 -32.36292 -31.74993 -31.07416 -29.58897 -26.68617 -25.05277 -24.09442 -23.14226 -22.57295 -21.40425 -20.25876 -19.70835 -18.67153 -18.45008 -18.27729 -17.59613 -17.04673 -16.82323 -16.63699 -16.52864 -16.39931 -16.18766 -15.85843 -15.41696 -15.03947 -14.87681 -14.58903 -14.33388 -14.15398 -13.66469 -13.53395 -13.39687 -13.27981 -13.25789 -13.20843 -13.02417 -12.84452 -12.65877 -12.54695 -12.20532 -12.18933 -11.82612 -11.65871 -11.56501 -11.46941 -10.79072 -10.59788 -10.48668 -9.97231 -9.49927 -8.24413 -6.34400 -1.12814 -0.23913 0.20776 1.41695 1.43294 1.51305 1.54793 1.66973 1.76294 2.22527 2.41182 2.41844 2.49028 2.86554 3.10480 3.30972 3.52715 3.56196 3.69679 3.94932 3.97436 4.14703 4.18041 4.26216 4.32527 4.49035 4.51218 4.55442 4.59245 4.72505 4.75568 4.86916 4.88071 5.11375 5.32315 5.32808 5.51530 5.60267 5.62335 5.79897 6.17274 6.27266 6.67856 6.78927 7.34625 7.35044 8.86991 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.002241 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.901985 B =12493.044411 C =13409.490016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.717 5.717 12 C 0.499 3.501 13 O -0.585 6.585 14 C -0.121 4.121 15 C 0.111 3.889 16 H 0.087 0.913 17 C -0.616 4.616 18 S 2.501 3.499 19 O -0.954 6.954 20 O -0.963 6.963 21 C -0.735 4.735 22 C -0.016 4.016 23 C -0.166 4.166 24 C -0.035 4.035 25 C -0.182 4.182 26 C 0.205 3.795 27 O -0.314 6.314 28 H 0.266 0.734 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.414 0.586 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.204 0.796 37 H 0.185 0.815 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -25.434 -3.412 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.369 5.369 12 C 0.287 3.713 13 O -0.465 6.465 14 C -0.160 4.160 15 C 0.054 3.946 16 H 0.105 0.895 17 C -0.748 4.748 18 S 2.684 3.316 19 O -0.951 6.951 20 O -0.960 6.960 21 C -0.822 4.822 22 C -0.035 4.035 23 C -0.184 4.184 24 C -0.053 4.053 25 C -0.201 4.201 26 C 0.157 3.843 27 O -0.227 6.227 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.250 0.750 34 H 0.185 0.815 35 H 0.160 0.840 36 H 0.222 0.778 37 H 0.203 0.797 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.773 -25.911 -2.965 26.351 hybrid contribution 0.096 1.702 -0.407 1.753 sum 3.870 -24.208 -3.372 24.746 Atomic orbital electron populations 1.70037 1.07430 1.28046 1.50944 1.25834 0.95788 1.02956 0.94453 0.85549 0.78368 0.78376 0.79073 1.20550 1.19426 1.19455 1.21460 0.93524 0.92152 1.51608 0.92549 1.19121 0.94208 0.91632 0.96438 1.21160 0.95004 0.82624 0.99514 1.46107 1.11219 1.05423 1.74149 1.21256 0.88079 0.86584 0.75377 1.90710 1.16111 1.88302 1.51421 1.21910 0.97375 0.86604 1.10151 1.22140 0.92630 0.93910 0.85891 0.89475 1.31017 1.15932 1.09958 1.17855 1.05194 0.76282 0.76485 0.73641 1.93572 1.80260 1.39846 1.81417 1.93593 1.73219 1.87357 1.41877 1.30237 1.22842 1.02728 1.26414 1.20904 0.90926 0.97595 0.94062 1.21591 1.00353 0.98029 0.98440 1.21611 0.95745 0.92106 0.95791 1.21212 0.94692 1.02166 1.02076 1.18522 0.87250 0.85507 0.92996 1.85382 1.48341 1.49733 1.39285 0.92524 0.97107 0.97234 0.94003 0.93800 0.74992 0.81463 0.83977 0.77841 0.79691 0.83575 0.81616 0.81523 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.19 13.29 21.45 0.28 -52.91 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -30.15 9.11 25.60 0.23 -29.91 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.14 5.78 5.61 86.38 0.48 6.27 16 11 N -0.72 -21.77 5.56 -463.06 -2.57 -24.34 16 12 C 0.50 14.15 7.71 87.65 0.68 14.82 16 13 O -0.59 -22.29 15.43 10.73 0.17 -22.13 16 14 C -0.12 -1.76 5.42 29.85 0.16 -1.60 16 15 C 0.11 1.97 2.22 30.87 0.07 2.04 16 16 H 0.09 1.82 7.94 -2.38 -0.02 1.80 16 17 C -0.62 -5.81 6.14 72.26 0.44 -5.36 16 18 S 2.50 46.63 5.39 -56.49 -0.30 46.32 16 19 O -0.95 -21.71 17.84 -127.68 -2.28 -23.99 16 20 O -0.96 -24.61 17.96 -127.68 -2.29 -26.90 16 21 C -0.74 -16.12 5.70 22.31 0.13 -16.00 16 22 C -0.02 -0.31 9.57 22.25 0.21 -0.10 16 23 C -0.17 -2.60 10.07 22.27 0.22 -2.38 16 24 C -0.03 -0.57 10.02 22.18 0.22 -0.35 16 25 C -0.18 -4.04 9.90 22.49 0.22 -3.81 16 26 C 0.20 4.86 6.52 22.64 0.15 5.01 16 27 O -0.31 -7.38 8.70 -70.50 -0.61 -8.00 16 28 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.01 0.53 8.14 -2.38 -0.02 0.52 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.41 9.95 8.47 -92.71 -0.79 9.16 16 34 H 0.17 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.20 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.19 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -84.34 363.40 -1.47 -85.81 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.27 Total: 10.24 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.84 Total: -29.15 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.29 Total: -77.25 kcal Atomic # 8 Polarization: -75.99 SS G_CDS: -5.02 Total: -81.01 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 46.63 SS G_CDS: -0.30 Total: 46.32 kcal Total: -84.34 -1.47 -85.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633911353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.224 kcal (2) G-P(sol) polarization free energy of solvation -84.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds