Wall clock time and date at job start Tue Mar 31 2020 22:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99904 * 3 2 1 5 5 H 1.48501 * 109.47365 * 29.99804 * 3 2 1 6 6 H 1.48505 * 109.47408 * 149.99994 * 3 2 1 7 7 C 1.39946 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 197.85613 * 7 2 1 9 9 C 1.41389 * 120.00201 * 17.85473 * 7 2 1 10 10 C 1.40719 * 120.24407 * 24.38950 * 9 7 2 11 11 C 1.37620 * 119.74795 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24708 * 0.02562 * 11 10 9 13 13 S 1.76199 * 119.74742 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40049 * 336.45683 * 13 12 11 15 15 O 1.42105 * 106.39781 * 203.54241 * 13 12 11 16 16 N 1.65592 * 107.21753 * 90.00114 * 13 12 11 17 17 C 1.46494 * 120.00033 * 269.99599 * 16 13 12 18 18 C 1.50703 * 109.47382 * 265.00136 * 17 16 13 19 19 O 1.20829 * 119.99910 * 0.02562 * 18 17 16 20 20 O 1.34227 * 120.00003 * 179.97438 * 18 17 16 21 21 C 1.46507 * 120.00011 * 90.00023 * 16 13 12 22 22 C 1.53778 * 113.61195 * 239.99426 * 21 16 13 23 23 C 1.53786 * 87.17374 * 220.05870 * 22 21 16 24 24 C 1.53784 * 87.07897 * 25.39419 * 23 22 21 25 25 C 1.38635 * 120.50026 * 0.25326 * 12 11 10 26 26 C 1.37619 * 120.24820 * 359.44867 * 25 12 11 27 27 H 0.97001 * 120.00582 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12386 * 359.97438 * 10 9 7 29 29 H 1.07992 * 119.87546 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47358 * 25.00147 * 17 16 13 31 31 H 1.09000 * 109.47437 * 145.00361 * 17 16 13 32 32 H 0.96703 * 116.99728 * 179.97438 * 20 18 17 33 33 H 1.09000 * 112.90693 * 11.24880 * 21 16 13 34 34 H 1.09002 * 113.60912 * 105.47585 * 22 21 16 35 35 H 1.08993 * 113.61755 * 334.65310 * 22 21 16 36 36 H 1.09005 * 113.60943 * 139.93962 * 23 22 21 37 37 H 1.08998 * 113.61803 * 270.84723 * 23 22 21 38 38 H 1.09005 * 113.61366 * 89.11323 * 24 23 22 39 39 H 1.08998 * 113.61584 * 219.93348 * 24 23 22 40 40 H 1.07997 * 119.87602 * 179.70357 * 25 12 11 41 41 H 1.08008 * 120.12739 * 180.27594 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3743 10 6 0.2208 -2.3627 -1.2101 11 6 -0.4100 -3.5323 -1.5682 12 6 0.0648 -4.7509 -1.1083 13 16 -0.7534 -6.2401 -1.5745 14 8 -2.0859 -5.8779 -1.9095 15 8 -0.4367 -7.2011 -0.5766 16 7 -0.0465 -6.7700 -2.9751 17 6 -0.5710 -6.3328 -4.2712 18 6 -1.5395 -7.3621 -4.7943 19 8 -1.7685 -8.3585 -4.1503 20 8 -2.1484 -7.1715 -5.9752 21 6 1.1034 -7.6761 -2.9180 22 6 2.3694 -7.1071 -3.5800 23 6 2.6192 -8.5179 -4.1388 24 6 1.1026 -8.7460 -4.0252 25 6 1.1750 -4.8062 -0.2798 26 6 1.8252 -3.6498 0.0861 27 1 -0.4851 0.8400 0.0004 28 1 -0.1514 -1.4143 -1.5685 29 1 -1.2780 -3.5006 -2.2098 30 1 -1.0841 -5.3785 -4.1524 31 1 0.2524 -6.2173 -4.9761 32 1 -2.7610 -7.8596 -6.2693 33 1 1.2760 -8.0802 -1.9205 34 1 3.1257 -6.7800 -2.8664 35 1 2.1632 -6.3629 -4.3491 36 1 2.9857 -8.5222 -5.1654 37 1 3.2071 -9.1525 -3.4757 38 1 0.5486 -8.4501 -4.9161 39 1 0.8361 -9.7423 -3.6725 40 1 1.5334 -5.7606 0.0764 41 1 2.6926 -3.6955 0.7281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645910364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:17 Heat of formation + Delta-G solvation = -125.365295 kcal Electronic energy + Delta-G solvation = -28015.115825 eV Core-core repulsion = 23987.396817 eV Total energy + Delta-G solvation = -4027.719007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.44304 -38.86315 -37.61173 -36.61915 -36.07963 -35.16703 -34.12158 -34.06997 -30.30005 -29.51068 -28.37649 -25.87636 -25.57503 -24.37148 -21.92919 -21.53032 -21.15894 -19.32987 -18.72568 -18.14872 -17.67639 -17.50855 -16.98207 -16.34955 -16.11006 -15.53945 -15.46325 -15.09334 -14.55528 -14.18489 -13.46249 -13.44554 -13.22179 -13.01454 -12.70435 -12.52828 -12.42533 -12.33830 -12.21495 -11.93604 -11.77520 -11.50671 -11.48727 -11.36003 -11.31208 -11.26132 -10.97180 -10.90925 -10.81628 -10.46857 -10.41983 -10.28938 -9.78888 -9.64568 -9.52218 -8.88691 -8.00050 -7.74567 -7.17619 -4.83893 1.05187 2.21271 2.21931 2.84883 2.87367 2.89343 2.90756 2.96661 3.48061 3.63598 4.19587 4.47500 4.55343 4.66765 4.76410 4.85632 4.94039 5.00187 5.19897 5.28248 5.33465 5.49964 5.66361 5.70298 5.82136 5.95137 6.03142 6.03661 6.05479 6.11746 6.44039 6.47934 6.59138 6.64807 6.72113 6.92325 7.01112 7.29914 7.38611 7.58957 7.73100 7.89114 7.92985 8.27876 8.47448 8.61042 9.73755 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003461 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.843508 B = 8087.655836 C = 8436.115397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.182 4.182 11 C -0.017 4.017 12 C -0.786 4.786 13 S 2.687 3.313 14 O -0.979 6.979 15 O -0.976 6.976 16 N -0.975 5.975 17 C 0.137 3.863 18 C 0.459 3.541 19 O -0.501 6.501 20 O -0.519 6.519 21 C 0.128 3.872 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.139 4.139 25 C 0.004 3.996 26 C -0.237 4.237 27 H 0.290 0.710 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.407 0.593 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -7.862 -10.837 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.202 4.202 11 C -0.038 4.038 12 C -0.883 4.883 13 S 2.789 3.211 14 O -0.969 6.969 15 O -0.966 6.966 16 N -0.806 5.806 17 C 0.008 3.992 18 C 0.299 3.701 19 O -0.388 6.388 20 O -0.330 6.330 21 C 0.022 3.978 22 C -0.192 4.192 23 C -0.180 4.180 24 C -0.178 4.178 25 C -0.016 4.016 26 C -0.258 4.258 27 H 0.101 0.899 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.266 0.734 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.227 -8.154 -10.074 13.150 hybrid contribution 0.257 0.856 -0.197 0.915 sum 2.484 -7.298 -10.271 12.842 Atomic orbital electron populations 1.69818 1.07941 1.30492 1.30293 1.26149 0.94886 1.02173 0.91847 0.86135 0.80513 0.79468 0.79783 1.18767 1.19841 1.18172 1.19967 0.98574 0.91208 1.36381 0.89375 1.17853 0.90080 0.92137 0.86326 1.21342 0.99722 0.96872 1.02282 1.20235 0.95868 0.91776 0.95872 1.29125 1.18796 1.15102 1.25266 1.01570 0.73374 0.74279 0.71898 1.93483 1.34760 1.84990 1.83689 1.93467 1.85229 1.61388 1.56565 1.57712 1.43857 1.59959 1.19122 1.20501 0.96061 0.95149 0.87469 1.24321 0.79964 0.87479 0.78368 1.90722 1.61031 1.29574 1.57444 1.84530 1.57484 1.53160 1.37874 1.22557 0.84278 0.90093 1.00879 1.23428 0.97938 0.96905 1.00901 1.22746 0.96317 0.97488 1.01464 1.23312 0.96041 0.99703 0.98766 1.20136 0.91730 0.97416 0.92323 1.21013 1.04187 0.92773 1.07833 0.89868 0.85945 0.87961 0.85533 0.86171 0.73411 0.85513 0.90435 0.89491 0.91191 0.89855 0.90606 0.90874 0.87857 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.94 10.95 55.55 0.61 -17.33 16 2 C 0.07 1.62 5.14 -17.34 -0.09 1.53 16 3 Si 0.92 16.59 29.59 -169.99 -5.03 11.56 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.43 -10.37 9.05 -37.74 -0.34 -10.71 16 8 H 0.09 1.98 7.91 -52.48 -0.41 1.57 16 9 C 0.14 3.44 5.58 -106.83 -0.60 2.85 16 10 C -0.18 -4.41 8.70 -38.87 -0.34 -4.74 16 11 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 12 C -0.79 -16.99 6.00 -39.29 -0.24 -17.23 16 13 S 2.69 53.54 5.64 -107.50 -0.61 52.94 16 14 O -0.98 -21.49 16.23 -57.17 -0.93 -22.42 16 15 O -0.98 -21.40 15.88 -57.17 -0.91 -22.30 16 16 N -0.97 -15.11 2.53 -107.61 -0.27 -15.39 16 17 C 0.14 1.75 5.18 -5.20 -0.03 1.72 16 18 C 0.46 6.16 6.81 36.01 0.25 6.40 16 19 O -0.50 -8.29 15.92 -18.75 -0.30 -8.59 16 20 O -0.52 -5.23 13.42 -39.25 -0.53 -5.76 16 21 C 0.13 1.74 4.30 -67.02 -0.29 1.45 16 22 C -0.15 -1.69 7.64 -25.92 -0.20 -1.89 16 23 C -0.14 -1.35 8.09 -25.91 -0.21 -1.56 16 24 C -0.14 -1.61 6.42 -25.82 -0.17 -1.77 16 25 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 26 C -0.24 -5.46 9.80 -38.87 -0.38 -5.84 16 27 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 28 H 0.12 3.00 6.15 -52.49 -0.32 2.68 16 29 H 0.10 2.09 7.60 -52.49 -0.40 1.70 16 30 H 0.13 1.57 7.61 -51.93 -0.40 1.17 16 31 H 0.12 1.12 6.56 -51.93 -0.34 0.78 16 32 H 0.41 2.43 9.10 45.56 0.41 2.84 16 33 H 0.13 1.82 7.08 -51.93 -0.37 1.46 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.90 6.86 -51.93 -0.36 0.54 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.85 5.48 -51.93 -0.28 0.57 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 2.03 7.59 -52.49 -0.40 1.63 16 41 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -31.88 354.04 -10.12 -42.00 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.11 Total: 10.78 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -3.38 Total: -30.83 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.34 Total: -32.72 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -2.66 Total: -59.07 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -0.61 Total: 52.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.88 -10.12 -42.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645910364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.364 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds