Wall clock time and date at job start Tue Mar 31 2020 22:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99904 * 3 2 1 5 5 H 1.48501 * 109.47365 * 29.99804 * 3 2 1 6 6 H 1.48505 * 109.47408 * 149.99994 * 3 2 1 7 7 C 1.39946 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 197.85613 * 7 2 1 9 9 C 1.41389 * 120.00201 * 17.85473 * 7 2 1 10 10 C 1.40719 * 120.24407 * 24.38950 * 9 7 2 11 11 C 1.37620 * 119.74795 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24708 * 0.02562 * 11 10 9 13 13 S 1.76199 * 119.74742 * 179.97438 * 12 11 10 14 14 O 1.42097 * 106.40049 * 336.45683 * 13 12 11 15 15 O 1.42105 * 106.39781 * 203.54241 * 13 12 11 16 16 N 1.65592 * 107.21753 * 90.00114 * 13 12 11 17 17 C 1.46494 * 120.00033 * 269.99599 * 16 13 12 18 18 C 1.50703 * 109.47382 * 265.00136 * 17 16 13 19 19 O 1.20829 * 119.99910 * 0.02562 * 18 17 16 20 20 O 1.34227 * 120.00003 * 179.97438 * 18 17 16 21 21 C 1.46507 * 120.00011 * 90.00023 * 16 13 12 22 22 C 1.53778 * 113.61195 * 239.99426 * 21 16 13 23 23 C 1.53786 * 87.17374 * 220.05870 * 22 21 16 24 24 C 1.53784 * 87.07897 * 25.39419 * 23 22 21 25 25 C 1.38635 * 120.50026 * 0.25326 * 12 11 10 26 26 C 1.37619 * 120.24820 * 359.44867 * 25 12 11 27 27 H 0.97001 * 120.00582 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12386 * 359.97438 * 10 9 7 29 29 H 1.07992 * 119.87546 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47358 * 25.00147 * 17 16 13 31 31 H 1.09000 * 109.47437 * 145.00361 * 17 16 13 32 32 H 0.96703 * 116.99728 * 179.97438 * 20 18 17 33 33 H 1.09000 * 112.90693 * 11.24880 * 21 16 13 34 34 H 1.09002 * 113.60912 * 105.47585 * 22 21 16 35 35 H 1.08993 * 113.61755 * 334.65310 * 22 21 16 36 36 H 1.09005 * 113.60943 * 139.93962 * 23 22 21 37 37 H 1.08998 * 113.61803 * 270.84723 * 23 22 21 38 38 H 1.09005 * 113.61366 * 89.11323 * 24 23 22 39 39 H 1.08998 * 113.61584 * 219.93348 * 24 23 22 40 40 H 1.07997 * 119.87602 * 179.70357 * 25 12 11 41 41 H 1.08008 * 120.12739 * 180.27594 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3743 10 6 0.2208 -2.3627 -1.2101 11 6 -0.4100 -3.5323 -1.5682 12 6 0.0648 -4.7509 -1.1083 13 16 -0.7534 -6.2401 -1.5745 14 8 -2.0859 -5.8779 -1.9095 15 8 -0.4367 -7.2011 -0.5766 16 7 -0.0465 -6.7700 -2.9751 17 6 -0.5710 -6.3328 -4.2712 18 6 -1.5395 -7.3621 -4.7943 19 8 -1.7685 -8.3585 -4.1503 20 8 -2.1484 -7.1715 -5.9752 21 6 1.1034 -7.6761 -2.9180 22 6 2.3694 -7.1071 -3.5800 23 6 2.6192 -8.5179 -4.1388 24 6 1.1026 -8.7460 -4.0252 25 6 1.1750 -4.8062 -0.2798 26 6 1.8252 -3.6498 0.0861 27 1 -0.4851 0.8400 0.0004 28 1 -0.1514 -1.4143 -1.5685 29 1 -1.2780 -3.5006 -2.2098 30 1 -1.0841 -5.3785 -4.1524 31 1 0.2524 -6.2173 -4.9761 32 1 -2.7610 -7.8596 -6.2693 33 1 1.2760 -8.0802 -1.9205 34 1 3.1257 -6.7800 -2.8664 35 1 2.1632 -6.3629 -4.3491 36 1 2.9857 -8.5222 -5.1654 37 1 3.2071 -9.1525 -3.4757 38 1 0.5486 -8.4501 -4.9161 39 1 0.8361 -9.7423 -3.6725 40 1 1.5334 -5.7606 0.0764 41 1 2.6926 -3.6955 0.7281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645910364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:16 Heat of formation + Delta-G solvation = -146.415009 kcal Electronic energy + Delta-G solvation = -28016.028609 eV Core-core repulsion = 23987.396817 eV Total energy + Delta-G solvation = -4028.631792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46603 -39.82729 -39.37707 -38.27079 -37.06653 -36.85254 -35.80558 -35.22326 -32.07005 -31.28997 -29.44554 -27.62335 -26.47228 -25.35896 -23.28477 -23.05328 -22.81653 -20.43109 -19.91581 -19.42103 -19.15585 -18.99851 -18.35327 -17.68835 -17.33386 -17.05797 -16.57481 -16.15924 -15.95559 -15.82661 -15.19229 -14.98136 -14.39902 -14.14068 -13.98468 -13.94941 -13.82034 -13.54799 -13.47925 -13.33091 -13.20093 -13.10946 -12.95914 -12.89044 -12.80600 -12.56835 -12.47622 -12.07038 -11.94088 -11.77922 -11.54260 -11.46789 -11.30573 -11.19226 -11.16163 -10.08759 -9.77944 -9.54343 -8.86596 -6.64362 -0.49327 0.47840 1.06991 1.19492 1.37750 1.44462 1.53111 1.89614 2.12855 2.22305 2.52121 2.92472 3.36137 3.48446 3.60678 3.76086 3.87120 3.93910 4.04548 4.23485 4.28685 4.33021 4.35053 4.48420 4.80285 4.82600 4.88252 4.94318 4.96226 5.07426 5.13204 5.19772 5.20582 5.24534 5.46113 5.53629 5.59888 5.62760 5.65394 5.78276 5.94403 6.16056 6.49652 6.69132 6.81675 7.00146 8.08410 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003461 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.843508 B = 8087.655836 C = 8436.115397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.113 3.887 10 C -0.204 4.204 11 C -0.019 4.019 12 C -0.791 4.791 13 S 2.709 3.291 14 O -1.002 7.002 15 O -1.000 7.000 16 N -0.969 5.969 17 C 0.122 3.878 18 C 0.464 3.536 19 O -0.539 6.539 20 O -0.507 6.507 21 C 0.106 3.894 22 C -0.149 4.149 23 C -0.126 4.126 24 C -0.135 4.135 25 C 0.001 3.999 26 C -0.253 4.253 27 H 0.299 0.701 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.427 0.573 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.122 0.878 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -7.850 -12.616 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.111 0.889 9 C 0.109 3.891 10 C -0.224 4.224 11 C -0.039 4.039 12 C -0.886 4.886 13 S 2.809 3.191 14 O -0.992 6.992 15 O -0.990 6.990 16 N -0.803 5.803 17 C -0.005 4.005 18 C 0.305 3.695 19 O -0.428 6.428 20 O -0.320 6.320 21 C 0.001 3.999 22 C -0.188 4.188 23 C -0.164 4.164 24 C -0.174 4.174 25 C -0.019 4.019 26 C -0.273 4.273 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.148 0.852 31 H 0.178 0.822 32 H 0.289 0.711 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.344 -8.131 -11.859 14.763 hybrid contribution -0.180 0.709 0.265 0.778 sum 3.164 -7.422 -11.594 14.125 Atomic orbital electron populations 1.69856 1.09474 1.31934 1.30783 1.27021 0.95506 1.05253 0.90655 0.85036 0.79073 0.74769 0.79987 1.18095 1.19175 1.17682 1.20261 0.99057 0.92053 1.37627 0.88856 1.18196 0.90680 0.93209 0.86972 1.21362 1.00624 0.97081 1.03365 1.20435 0.96061 0.91655 0.95788 1.29469 1.18309 1.15895 1.24901 1.00780 0.72679 0.73284 0.72357 1.93443 1.36320 1.85239 1.84240 1.93429 1.85471 1.61587 1.58540 1.57272 1.44386 1.59931 1.18755 1.20901 0.97620 0.95065 0.86878 1.24308 0.79677 0.86780 0.78706 1.90721 1.62358 1.31091 1.58661 1.84478 1.57493 1.53838 1.36204 1.22914 0.84630 0.91080 1.01242 1.23455 0.96192 0.98232 1.00904 1.22708 0.94757 0.96058 1.02832 1.23311 0.97791 0.98418 0.97920 1.20388 0.91649 0.97890 0.91980 1.21229 1.04982 0.92769 1.08352 0.89009 0.86941 0.86488 0.85158 0.82156 0.71111 0.86973 0.90748 0.88278 0.89012 0.89052 0.90003 0.91678 0.86060 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.11 10.95 21.83 0.24 -37.87 16 2 C 0.04 1.59 5.14 85.26 0.44 2.03 16 3 Si 0.99 33.57 29.59 68.60 2.03 35.60 16 4 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 5 H -0.27 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.25 -8.30 7.11 99.48 0.71 -7.60 16 7 C -0.46 -22.50 9.05 23.46 0.21 -22.29 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.11 5.70 5.58 -21.29 -0.12 5.58 16 10 C -0.20 -10.14 8.70 22.73 0.20 -9.95 16 11 C -0.02 -0.88 9.49 22.22 0.21 -0.67 16 12 C -0.79 -34.32 6.00 22.46 0.13 -34.19 16 13 S 2.71 107.61 5.64 -56.49 -0.32 107.29 16 14 O -1.00 -43.96 16.23 -128.00 -2.08 -46.03 16 15 O -1.00 -44.08 15.88 -128.00 -2.03 -46.12 16 16 N -0.97 -28.96 2.53 -494.36 -1.25 -30.20 16 17 C 0.12 2.89 5.18 85.64 0.44 3.33 16 18 C 0.46 11.56 6.81 71.24 0.49 12.04 16 19 O -0.54 -17.23 15.92 21.95 0.35 -16.88 16 20 O -0.51 -8.88 13.42 -51.38 -0.69 -9.57 16 21 C 0.11 2.75 4.30 45.58 0.20 2.95 16 22 C -0.15 -2.95 7.64 31.12 0.24 -2.71 16 23 C -0.13 -2.00 8.09 31.12 0.25 -1.75 16 24 C -0.13 -2.84 6.42 31.18 0.20 -2.64 16 25 C 0.00 0.04 9.49 22.22 0.21 0.25 16 26 C -0.25 -11.80 9.80 22.73 0.22 -11.57 16 27 H 0.30 12.69 8.30 -92.71 -0.77 11.92 16 28 H 0.11 5.71 6.15 -2.91 -0.02 5.69 16 29 H 0.12 4.83 7.60 -2.91 -0.02 4.80 16 30 H 0.13 3.01 7.61 -2.39 -0.02 3.00 16 31 H 0.16 2.44 6.56 -2.39 -0.02 2.43 16 32 H 0.43 3.97 9.10 -74.06 -0.67 3.30 16 33 H 0.11 3.20 7.08 -2.39 -0.02 3.19 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.72 6.86 -2.39 -0.02 1.70 16 36 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.62 5.48 -2.38 -0.01 1.61 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.12 4.76 7.59 -2.91 -0.02 4.74 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -69.85 354.04 -0.01 -69.87 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.41 Total: 33.51 kcal Atomic # 6 Polarization: -62.90 SS G_CDS: 3.32 Total: -59.57 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.01 Total: -68.07 kcal Atomic # 8 Polarization: -114.16 SS G_CDS: -4.45 Total: -118.61 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 2.03 Total: 35.60 kcal Atomic # 16 Polarization: 107.61 SS G_CDS: -0.32 Total: 107.29 kcal Total: -69.85 -0.01 -69.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645910364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.548 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds