Wall clock time and date at job start Tue Mar 31 2020 22:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47398 * 270.00520 * 3 2 1 5 5 H 1.48497 * 109.46978 * 30.00686 * 3 2 1 6 6 H 1.48504 * 109.46940 * 149.99996 * 3 2 1 7 7 C 1.38653 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00106 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00150 * 185.05629 * 9 7 2 11 11 C 1.38897 * 120.06968 * 354.46853 * 10 9 7 12 12 C 1.38081 * 119.92892 * 179.97438 * 11 10 9 13 13 C 1.38318 * 120.06813 * 359.97438 * 12 11 10 14 14 C 1.38273 * 120.14376 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.97172 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47235 * 89.99605 * 15 14 13 17 17 C 1.34773 * 120.00031 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99944 * 180.02562 * 17 16 15 20 20 H 1.09008 * 110.36045 * 327.16163 * 19 17 16 21 21 C 1.54162 * 110.32279 * 89.33329 * 19 17 16 22 22 C 1.53884 * 108.70276 * 146.81391 * 21 19 17 23 23 C 1.55051 * 106.62133 * 312.81855 * 22 21 19 24 24 S 1.82924 * 110.31616 * 204.99919 * 19 17 16 25 25 O 1.42106 * 109.35010 * 125.57183 * 24 19 17 26 26 O 1.42095 * 109.35562 * 352.36726 * 24 19 17 27 27 C 1.38125 * 120.06434 * 0.27177 * 14 13 12 28 28 H 0.97004 * 120.00055 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03595 * 359.97200 * 11 10 9 30 30 H 1.08004 * 119.96441 * 179.97438 * 12 11 10 31 31 H 1.08011 * 119.92795 * 179.97438 * 13 12 11 32 32 H 1.09009 * 109.46756 * 330.00210 * 15 14 13 33 33 H 1.08994 * 109.47382 * 210.00363 * 15 14 13 34 34 H 0.97002 * 119.99709 * 0.02562 * 16 15 14 35 35 H 1.08993 * 109.64693 * 26.96276 * 21 19 17 36 36 H 1.08994 * 109.64468 * 266.66316 * 21 19 17 37 37 H 1.08997 * 110.02558 * 193.52990 * 22 21 19 38 38 H 1.08992 * 110.02695 * 72.10916 * 22 21 19 39 39 H 1.09005 * 110.79174 * 284.16719 * 23 22 21 40 40 H 1.08995 * 110.78765 * 160.70822 * 23 22 21 41 41 H 1.08005 * 120.03079 * 179.70515 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4400 0.7001 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1055 11 6 3.4573 -3.4395 0.0921 12 6 4.2024 -4.5970 0.2007 13 6 3.5686 -5.8203 0.3233 14 6 2.1876 -5.8885 0.3370 15 6 1.5010 -7.2233 0.4701 16 7 1.2856 -7.5225 1.8880 17 6 0.6837 -8.6726 2.2502 18 8 0.3199 -9.4598 1.4024 19 6 0.4617 -8.9800 3.7087 20 1 1.2690 -8.5636 4.3113 21 6 -0.8971 -8.4192 4.1733 22 6 -1.4774 -9.3574 5.2462 23 6 -1.3370 -10.8004 4.6965 24 16 0.3440 -10.7872 3.9661 25 8 1.2883 -11.1850 4.9507 26 8 0.3148 -11.4416 2.7052 27 6 1.4366 -4.7349 0.2225 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4846 -0.0032 30 1 5.2812 -4.5471 0.1899 31 1 4.1536 -6.7243 0.4077 32 1 2.1252 -7.9988 0.0260 33 1 0.5407 -7.1910 -0.0444 34 1 1.5763 -6.8927 2.5661 35 1 -1.5803 -8.3650 3.3257 36 1 -0.7581 -7.4233 4.5937 37 1 -2.5281 -9.1238 5.4176 38 1 -0.9156 -9.2553 6.1746 39 1 -2.0891 -10.9983 3.9327 40 1 -1.4025 -11.5299 5.5036 41 1 0.3580 -4.7892 0.2285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645914052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:04 Heat of formation + Delta-G solvation = -104.236760 kcal Electronic energy + Delta-G solvation = -26356.262330 eV Core-core repulsion = 22329.459524 eV Total energy + Delta-G solvation = -4026.802805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.07978 -39.12521 -37.29184 -36.97375 -36.52462 -36.04425 -34.63240 -32.39902 -31.46007 -30.28778 -29.16058 -26.57698 -25.66713 -24.97901 -22.16173 -21.78076 -21.03811 -20.84330 -19.10428 -18.14060 -17.65258 -17.35883 -16.94615 -16.48988 -15.88869 -15.55645 -15.38497 -15.11470 -14.75648 -14.57608 -14.47144 -14.21430 -13.99277 -13.73489 -13.54790 -13.02466 -12.86971 -12.59360 -12.50734 -12.40639 -12.30188 -12.18216 -12.07287 -11.72678 -11.58467 -11.45467 -11.05106 -11.01068 -10.87968 -10.76123 -10.64182 -10.52389 -10.07853 -9.47292 -9.12715 -8.94778 -8.31875 -7.39607 -6.54828 -4.14427 -0.33098 1.81194 2.17590 2.20162 2.35055 2.96449 3.06736 3.07502 3.12015 3.32209 3.75373 3.87830 3.96088 4.13740 4.22234 4.32124 4.47999 4.50663 4.69009 4.85301 5.00107 5.02105 5.09610 5.19489 5.29344 5.38122 5.46481 5.47885 5.66910 5.77930 5.83365 6.00916 6.18269 6.30733 6.48459 6.74721 6.93146 7.11167 7.20681 7.28654 7.34055 7.64395 7.89228 7.99727 8.90624 9.58506 10.62840 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002256 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.465430 B =12406.216343 C =13164.184230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.075 4.075 15 C 0.166 3.834 16 N -0.710 5.710 17 C 0.530 3.470 18 O -0.504 6.504 19 C -0.599 4.599 20 H 0.159 0.841 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.590 4.590 24 S 2.406 3.594 25 O -0.935 6.935 26 O -0.894 6.894 27 C -0.171 4.171 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.405 0.595 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -15.744 10.997 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.075 4.075 15 C 0.043 3.957 16 N -0.361 5.361 17 C 0.312 3.688 18 O -0.379 6.379 19 C -0.708 4.708 20 H 0.176 0.824 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.720 4.720 24 S 2.585 3.415 25 O -0.932 6.932 26 O -0.891 6.891 27 C -0.191 4.191 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.131 -16.801 10.132 19.652 hybrid contribution 0.226 2.024 0.569 2.115 sum -0.905 -14.777 10.702 18.267 Atomic orbital electron populations 1.70032 1.05987 1.27819 1.45690 1.25297 0.95852 0.98878 0.96402 0.85706 0.78914 0.79983 0.78807 1.19802 1.20197 1.19173 1.21327 0.91808 0.80734 1.53114 0.89020 1.83980 1.34282 1.11424 1.78220 1.19322 0.90260 0.88066 0.92723 1.21259 0.93850 0.99137 1.10170 1.20756 0.98633 0.92228 0.97764 1.20496 0.93332 0.97203 1.10426 1.19239 0.93514 0.92743 1.02053 1.20250 1.00525 0.94058 0.80844 1.46075 1.60179 1.20512 1.09371 1.19125 0.79145 0.82725 0.87803 1.90952 1.49374 1.46527 1.51034 1.30788 1.07968 1.28992 1.03070 0.82361 1.21916 0.91035 1.01310 0.99897 1.22216 1.04981 0.89751 0.98781 1.30690 1.23260 1.04891 1.13158 1.08941 0.78963 0.77439 0.76166 1.93629 1.58893 1.79325 1.61339 1.93711 1.85862 1.69720 1.39826 1.20075 0.99396 0.89799 1.09815 0.91912 0.85422 0.87219 0.87420 0.90496 0.90458 0.75973 0.89018 0.88020 0.87965 0.89197 0.84054 0.84379 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.76 29.55 -169.99 -5.02 14.73 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.54 9.49 30.89 0.29 -10.25 16 8 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 9 O -0.18 -4.78 9.76 0.04 0.00 -4.78 16 10 C 0.15 3.39 6.65 -39.11 -0.26 3.13 16 11 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.20 -3.07 9.70 -39.54 -0.38 -3.45 16 14 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.17 2.30 5.80 -5.19 -0.03 2.27 16 16 N -0.71 -8.51 5.55 -61.47 -0.34 -8.85 16 17 C 0.53 6.52 6.85 -10.99 -0.08 6.44 16 18 O -0.50 -8.14 14.39 -17.91 -0.26 -8.40 16 19 C -0.60 -4.90 3.60 -27.28 -0.10 -4.99 16 20 H 0.16 0.88 8.14 -51.92 -0.42 0.45 16 21 C -0.10 -0.60 5.93 -25.66 -0.15 -0.76 16 22 C -0.12 -0.50 6.48 -25.19 -0.16 -0.66 16 23 C -0.59 -3.11 7.31 38.24 0.28 -2.83 16 24 S 2.41 22.64 5.91 -107.50 -0.64 22.00 16 25 O -0.93 -11.07 18.15 -57.71 -1.05 -12.12 16 26 O -0.89 -12.69 15.52 -66.94 -1.04 -13.72 16 27 C -0.17 -3.30 9.64 -39.39 -0.38 -3.68 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.13 2.60 5.64 -52.48 -0.30 2.31 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.08 1.05 8.09 -51.92 -0.42 0.63 16 33 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.41 4.15 8.46 -40.82 -0.35 3.80 16 35 H 0.09 0.60 7.85 -51.93 -0.41 0.19 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -36.55 359.86 -9.64 -46.19 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.10 Total: 5.32 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.37 Total: -22.15 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.42 Total: -32.50 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -2.34 Total: -39.02 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 22.64 SS G_CDS: -0.64 Total: 22.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.55 -9.64 -46.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645914052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.050 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds