Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47398 * 270.00520 * 3 2 1 5 5 H 1.48497 * 109.46978 * 30.00686 * 3 2 1 6 6 H 1.48504 * 109.46940 * 149.99996 * 3 2 1 7 7 C 1.38653 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00106 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00150 * 185.05629 * 9 7 2 11 11 C 1.38897 * 120.06968 * 354.46853 * 10 9 7 12 12 C 1.38081 * 119.92892 * 179.97438 * 11 10 9 13 13 C 1.38318 * 120.06813 * 359.97438 * 12 11 10 14 14 C 1.38273 * 120.14376 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.97172 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47235 * 89.99605 * 15 14 13 17 17 C 1.34773 * 120.00031 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99944 * 180.02562 * 17 16 15 20 20 H 1.09008 * 110.36045 * 327.16163 * 19 17 16 21 21 C 1.54162 * 110.32279 * 89.33329 * 19 17 16 22 22 C 1.53884 * 108.70276 * 146.81391 * 21 19 17 23 23 C 1.55051 * 106.62133 * 312.81855 * 22 21 19 24 24 S 1.82924 * 110.31616 * 204.99919 * 19 17 16 25 25 O 1.42106 * 109.35010 * 125.57183 * 24 19 17 26 26 O 1.42095 * 109.35562 * 352.36726 * 24 19 17 27 27 C 1.38125 * 120.06434 * 0.27177 * 14 13 12 28 28 H 0.97004 * 120.00055 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.03595 * 359.97200 * 11 10 9 30 30 H 1.08004 * 119.96441 * 179.97438 * 12 11 10 31 31 H 1.08011 * 119.92795 * 179.97438 * 13 12 11 32 32 H 1.09009 * 109.46756 * 330.00210 * 15 14 13 33 33 H 1.08994 * 109.47382 * 210.00363 * 15 14 13 34 34 H 0.97002 * 119.99709 * 0.02562 * 16 15 14 35 35 H 1.08993 * 109.64693 * 26.96276 * 21 19 17 36 36 H 1.08994 * 109.64468 * 266.66316 * 21 19 17 37 37 H 1.08997 * 110.02558 * 193.52990 * 22 21 19 38 38 H 1.08992 * 110.02695 * 72.10916 * 22 21 19 39 39 H 1.09005 * 110.79174 * 284.16719 * 23 22 21 40 40 H 1.08995 * 110.78765 * 160.70822 * 23 22 21 41 41 H 1.08005 * 120.03079 * 179.70515 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4400 0.7001 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1055 11 6 3.4573 -3.4395 0.0921 12 6 4.2024 -4.5970 0.2007 13 6 3.5686 -5.8203 0.3233 14 6 2.1876 -5.8885 0.3370 15 6 1.5010 -7.2233 0.4701 16 7 1.2856 -7.5225 1.8880 17 6 0.6837 -8.6726 2.2502 18 8 0.3199 -9.4598 1.4024 19 6 0.4617 -8.9800 3.7087 20 1 1.2690 -8.5636 4.3113 21 6 -0.8971 -8.4192 4.1733 22 6 -1.4774 -9.3574 5.2462 23 6 -1.3370 -10.8004 4.6965 24 16 0.3440 -10.7872 3.9661 25 8 1.2883 -11.1850 4.9507 26 8 0.3148 -11.4416 2.7052 27 6 1.4366 -4.7349 0.2225 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4846 -0.0032 30 1 5.2812 -4.5471 0.1899 31 1 4.1536 -6.7243 0.4077 32 1 2.1252 -7.9988 0.0260 33 1 0.5407 -7.1910 -0.0444 34 1 1.5763 -6.8927 2.5661 35 1 -1.5803 -8.3650 3.3257 36 1 -0.7581 -7.4233 4.5937 37 1 -2.5281 -9.1238 5.4176 38 1 -0.9156 -9.2553 6.1746 39 1 -2.0891 -10.9983 3.9327 40 1 -1.4025 -11.5299 5.5036 41 1 0.3580 -4.7892 0.2285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645914052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -131.892265 kcal Electronic energy + Delta-G solvation = -26357.461562 eV Core-core repulsion = 22329.459524 eV Total energy + Delta-G solvation = -4028.002038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19230 -40.64502 -38.53235 -38.07642 -37.23016 -36.78255 -35.83994 -34.29305 -32.56425 -31.28317 -30.64554 -27.69610 -27.11209 -26.13789 -23.29412 -22.71863 -22.43412 -21.85987 -20.01049 -19.52941 -18.96266 -18.50276 -17.97671 -17.25284 -16.87060 -16.77140 -16.58955 -16.22847 -16.11792 -16.04742 -15.52772 -15.19566 -15.10049 -14.89036 -14.73100 -14.34112 -13.95882 -13.75431 -13.62286 -13.40740 -13.19867 -13.09336 -13.02096 -12.96950 -12.80555 -12.58620 -12.36547 -12.28636 -12.11790 -12.02421 -11.65800 -11.24787 -11.23472 -11.08783 -10.81118 -10.20757 -9.77835 -9.04925 -8.47564 -6.15909 -1.00745 0.36027 0.68921 1.36182 1.38448 1.44412 1.52935 1.55977 2.00714 2.17369 2.66406 2.80747 3.04873 3.19067 3.36296 3.39285 3.54541 3.72539 3.79018 3.81984 4.05475 4.07799 4.19341 4.29285 4.38888 4.51002 4.56469 4.65226 4.69751 4.71872 4.99074 4.99515 5.03062 5.11134 5.12455 5.23940 5.26643 5.60581 5.68902 5.70152 6.00969 6.14239 6.36043 6.97494 7.04036 7.76979 8.75362 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002256 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.465430 B =12406.216343 C =13164.184230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.113 3.887 11 C -0.234 4.234 12 C -0.070 4.070 13 C -0.171 4.171 14 C -0.059 4.059 15 C 0.169 3.831 16 N -0.705 5.705 17 C 0.527 3.473 18 O -0.546 6.546 19 C -0.588 4.588 20 H 0.187 0.813 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.561 4.561 24 S 2.390 3.610 25 O -0.968 6.968 26 O -0.956 6.956 27 C -0.178 4.178 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.416 0.584 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -16.588 13.015 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.063 3.937 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.190 4.190 14 C -0.060 4.060 15 C 0.046 3.954 16 N -0.357 5.357 17 C 0.311 3.689 18 O -0.423 6.423 19 C -0.698 4.698 20 H 0.205 0.795 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.695 4.695 24 S 2.575 3.425 25 O -0.965 6.965 26 O -0.953 6.953 27 C -0.198 4.198 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.252 0.748 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.226 -17.705 12.156 21.478 hybrid contribution -0.120 1.957 -0.016 1.961 sum 0.106 -15.748 12.140 19.885 Atomic orbital electron populations 1.70176 1.08006 1.28800 1.48797 1.26547 0.96804 1.02679 0.95877 0.84609 0.77890 0.74709 0.79178 1.19024 1.19693 1.17534 1.21808 0.92524 0.81347 1.53183 0.87976 1.83946 1.35885 1.12547 1.81353 1.19847 0.91569 0.87874 0.94398 1.21384 0.93097 1.00375 1.10508 1.21150 1.00413 0.91145 0.96035 1.20999 0.93168 0.98251 1.06550 1.19406 0.93891 0.92488 1.00205 1.20125 1.00202 0.92798 0.82245 1.45967 1.60151 1.20855 1.08730 1.19706 0.78000 0.81887 0.89300 1.90943 1.50910 1.47717 1.52748 1.30698 1.10695 1.28057 1.00392 0.79518 1.22070 0.89281 1.02714 1.00326 1.22372 1.06651 0.87806 0.98691 1.30530 1.18289 1.06938 1.13699 1.09102 0.80782 0.77584 0.74983 1.93580 1.61492 1.80145 1.61284 1.93639 1.87344 1.71584 1.42690 1.20211 0.99501 0.89966 1.10154 0.91851 0.86170 0.83474 0.83631 0.89538 0.91198 0.74757 0.89939 0.86095 0.85573 0.87074 0.83086 0.81796 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.87 13.67 21.61 0.30 -54.57 16 2 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 3 Si 1.02 41.31 29.55 68.60 2.03 43.33 16 4 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.41 -23.05 9.49 67.92 0.64 -22.41 16 8 H 0.10 5.20 5.20 -2.91 -0.02 5.18 16 9 O -0.23 -13.27 9.76 -22.77 -0.22 -13.49 16 10 C 0.11 5.28 6.65 22.58 0.15 5.43 16 11 C -0.23 -9.40 9.17 22.39 0.21 -9.19 16 12 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 13 C -0.17 -4.73 9.70 22.30 0.22 -4.51 16 14 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 15 C 0.17 4.44 5.80 85.63 0.50 4.94 16 16 N -0.70 -15.66 5.55 -466.79 -2.59 -18.25 16 17 C 0.53 12.39 6.85 87.66 0.60 12.99 16 18 O -0.55 -17.70 14.39 19.41 0.28 -17.42 16 19 C -0.59 -8.44 3.60 30.24 0.11 -8.33 16 20 H 0.19 1.51 8.14 -2.38 -0.02 1.49 16 21 C -0.11 -0.92 5.93 31.29 0.19 -0.74 16 22 C -0.12 -0.49 6.48 31.59 0.20 -0.28 16 23 C -0.56 -4.18 7.31 72.68 0.53 -3.65 16 24 S 2.39 42.96 5.91 -56.49 -0.33 42.63 16 25 O -0.97 -22.26 18.15 -127.49 -2.31 -24.57 16 26 O -0.96 -27.97 15.52 -118.66 -1.84 -29.82 16 27 C -0.18 -6.99 9.64 22.39 0.22 -6.77 16 28 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 29 H 0.12 4.93 5.64 -2.91 -0.02 4.92 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.15 3.09 8.06 -2.90 -0.02 3.07 16 32 H 0.09 2.16 8.09 -2.38 -0.02 2.14 16 33 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 34 H 0.42 7.50 8.46 -92.71 -0.78 6.72 16 35 H 0.08 0.92 7.85 -2.39 -0.02 0.90 16 36 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.15 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -86.70 359.86 -0.26 -86.97 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.29 Total: 22.23 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.14 Total: -37.03 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -2.29 Total: -72.82 kcal Atomic # 8 Polarization: -81.20 SS G_CDS: -4.10 Total: -85.30 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 42.96 SS G_CDS: -0.33 Total: 42.63 kcal Total: -86.70 -0.26 -86.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645914052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.925 kcal (2) G-P(sol) polarization free energy of solvation -86.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds