Wall clock time and date at job start Tue Mar 31 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 112.94386 * 2 1 4 4 C 1.53945 * 113.74124 * 228.26798 * 2 1 3 5 5 N 1.47589 * 86.11297 * 222.04737 * 4 2 1 6 6 S 1.65601 * 134.48818 * 204.63940 * 5 4 2 7 7 O 1.42095 * 106.40401 * 23.54369 * 6 5 4 8 8 O 1.42102 * 106.39824 * 156.46289 * 6 5 4 9 9 C 1.76195 * 107.21734 * 269.99793 * 6 5 4 10 10 C 1.38634 * 119.75456 * 269.72961 * 9 6 5 11 11 C 1.37618 * 120.25006 * 179.72258 * 10 9 6 12 12 C 1.40718 * 119.74506 * 0.53232 * 11 10 9 13 13 C 1.41389 * 120.24445 * 179.72768 * 12 11 10 14 14 H 1.08001 * 120.00072 * 204.40394 * 13 12 11 15 15 C 1.39940 * 120.00157 * 24.39933 * 13 12 11 16 16 N 1.30825 * 120.00059 * 17.84988 * 15 13 12 17 17 Si 1.86801 * 120.00188 * 197.85035 * 15 13 12 18 18 H 1.48502 * 109.47528 * 89.99750 * 17 15 13 19 19 H 1.48504 * 109.47320 * 210.00262 * 17 15 13 20 20 H 1.48502 * 109.47074 * 330.00294 * 17 15 13 21 21 C 1.40721 * 119.51022 * 359.74055 * 12 11 10 22 22 C 1.37616 * 119.74389 * 0.02562 * 21 12 11 23 23 C 1.47576 * 91.01554 * 24.64257 * 5 4 2 24 24 H 1.08997 * 113.87727 * 89.67228 * 23 5 4 25 25 C 1.50696 * 113.76778 * 221.06097 * 23 5 4 26 26 O 1.20821 * 120.00163 * 356.48689 * 25 23 5 27 27 O 1.34238 * 120.00246 * 176.49707 * 25 23 5 28 28 H 1.08995 * 109.47618 * 288.40532 * 1 2 3 29 29 H 1.09007 * 109.47168 * 48.41166 * 1 2 3 30 30 H 1.09000 * 109.47174 * 168.40338 * 1 2 3 31 31 H 1.08998 * 109.47171 * 191.58930 * 3 2 1 32 32 H 1.09004 * 109.47534 * 311.59356 * 3 2 1 33 33 H 1.09006 * 109.47160 * 71.58993 * 3 2 1 34 34 H 1.08994 * 113.77144 * 336.34827 * 4 2 1 35 35 H 1.09000 * 113.77133 * 107.63744 * 4 2 1 36 36 H 1.08001 * 119.86983 * 359.97438 * 10 9 6 37 37 H 1.07994 * 120.12839 * 180.27829 * 11 10 9 38 38 H 0.97003 * 119.99948 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.12471 * 180.02562 * 21 12 11 40 40 H 1.07997 * 119.87546 * 179.97438 * 22 21 12 41 41 H 0.96699 * 116.99782 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1264 1.4089 0.0000 4 6 2.1498 -0.9380 -1.0516 5 7 3.1104 -1.3200 0.0017 6 16 4.6486 -1.9336 0.0024 7 8 5.2230 -1.5782 -1.2477 8 8 5.2229 -1.5751 1.2518 9 6 4.5093 -3.6901 0.0047 10 6 4.4606 -4.3749 1.2091 11 6 4.3462 -5.7462 1.2228 12 6 4.2898 -6.4543 0.0080 13 6 4.1780 -7.8637 0.0098 14 1 4.5203 -8.4336 -0.8414 15 6 3.6239 -8.5203 1.1144 16 7 2.9015 -7.8532 1.9773 17 14 3.9158 -10.3494 1.3568 18 1 5.1442 -10.5517 2.1663 19 1 2.7538 -10.9468 2.0627 20 1 4.0814 -11.0038 0.0341 21 6 4.3458 -5.7492 -1.2085 22 6 4.4554 -4.3774 -1.1982 23 6 2.1498 -0.9355 1.0539 24 1 1.4895 -1.7447 1.3656 25 6 2.7791 -0.2098 2.2151 26 8 3.9762 -0.0507 2.2509 27 8 2.0096 0.2598 3.2098 28 1 -0.3634 0.3244 0.9750 29 1 -0.3634 0.6822 -0.7687 30 1 -0.3633 -1.0067 -0.2066 31 1 3.1951 1.3511 -0.2064 32 1 1.6399 2.0096 -0.7686 33 1 1.9692 1.8701 0.9751 34 1 1.4903 -1.7492 -1.3599 35 1 2.6034 -0.4153 -1.8937 36 1 4.5086 -3.8297 2.1401 37 1 4.3039 -6.2773 2.1622 38 1 2.5171 -8.3085 2.7427 39 1 4.3029 -6.2825 -2.1466 40 1 4.4989 -3.8342 -2.1305 41 1 2.4585 0.7188 3.9329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646052508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:45 Heat of formation + Delta-G solvation = -113.048814 kcal Electronic energy + Delta-G solvation = -28114.869638 eV Core-core repulsion = 24087.684713 eV Total energy + Delta-G solvation = -4027.184925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.93207 -38.84810 -37.56635 -36.36708 -35.83221 -34.93126 -34.03917 -32.10967 -30.24518 -29.46509 -27.90309 -27.64374 -25.82813 -25.32699 -22.14594 -21.45960 -21.11919 -18.94136 -18.37867 -17.87228 -17.62291 -17.35048 -16.57572 -16.15647 -15.82208 -15.46895 -15.18326 -14.31038 -14.20745 -14.08769 -13.91629 -13.45859 -13.19671 -13.08492 -12.75646 -12.43498 -12.38640 -12.20319 -12.18939 -12.10879 -11.75905 -11.54866 -11.41780 -11.40425 -11.21846 -11.16310 -11.07154 -10.96969 -10.89203 -10.49924 -10.38238 -10.00492 -9.74234 -9.59893 -9.50951 -8.85897 -7.95092 -7.70530 -7.15114 -4.80422 1.17635 2.25634 2.32588 2.86963 2.89800 2.92024 2.92818 2.96543 3.56880 3.65800 4.00251 4.21969 4.51867 4.62629 4.73318 4.79580 4.94174 5.25345 5.37773 5.41845 5.47524 5.52133 5.60274 5.66870 5.75975 5.81549 5.94739 6.02082 6.07947 6.17419 6.21950 6.50371 6.62287 6.67614 6.73039 6.96668 7.05336 7.33967 7.42459 7.64118 7.76837 7.96484 8.04928 8.31718 8.50880 8.64952 9.76444 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.003522 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.202212 B = 7948.806168 C = 8278.001328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.136 4.136 4 C 0.132 3.868 5 N -1.016 6.016 6 S 2.696 3.304 7 O -0.980 6.980 8 O -0.942 6.942 9 C -0.791 4.791 10 C -0.015 4.015 11 C -0.183 4.183 12 C 0.139 3.861 13 C -0.436 4.436 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.767 5.767 17 Si 0.918 3.082 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.239 4.239 22 C 0.000 4.000 23 C 0.168 3.832 24 H 0.129 0.871 25 C 0.453 3.547 26 O -0.454 6.454 27 O -0.519 6.519 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 11.532 -0.259 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.193 4.193 4 C 0.006 3.994 5 N -0.852 5.852 6 S 2.796 3.204 7 O -0.971 6.971 8 O -0.933 6.933 9 C -0.886 4.886 10 C -0.036 4.036 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.464 4.464 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.389 5.389 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.259 4.259 22 C -0.020 4.020 23 C 0.059 3.941 24 H 0.146 0.854 25 C 0.290 3.710 26 O -0.336 6.336 27 O -0.332 6.332 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.572 11.813 -0.366 14.036 hybrid contribution 0.064 -1.467 0.769 1.658 sum -7.508 10.346 0.404 12.789 Atomic orbital electron populations 1.21797 0.92302 1.02879 1.02830 1.22512 0.96184 0.95209 0.93993 1.21682 1.01570 0.93542 1.02491 1.22872 0.89057 0.96037 0.91385 1.60696 1.30945 1.80440 1.13072 1.01443 0.71390 0.74286 0.73232 1.93468 1.74007 1.84485 1.45156 1.93610 1.73442 1.83186 1.43026 1.29442 1.37360 1.22201 0.99640 1.20244 0.94011 0.95067 0.94236 1.21335 1.07655 0.92662 0.98661 1.17849 0.84182 0.93111 0.91289 1.19950 1.32573 0.92014 1.01816 0.89407 1.26131 0.92358 1.02018 0.94431 1.69818 1.19940 1.39198 1.09974 0.86140 0.79220 0.80573 0.79985 1.18786 1.19853 1.18175 1.21056 1.14444 0.93286 0.97141 1.20173 0.92666 0.94723 0.94441 1.21880 0.89270 0.96947 0.86012 0.85395 1.23440 0.86169 0.78282 0.83103 1.91020 1.14765 1.51185 1.76652 1.84476 1.45132 1.70057 1.33497 0.91477 0.91605 0.91499 0.91715 0.91105 0.91990 0.89055 0.89205 0.88137 0.86001 0.90008 0.88182 0.87909 0.73368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.21 37.16 0.34 -0.70 16 2 C -0.08 -0.79 1.35 -153.58 -0.21 -1.00 16 3 C -0.14 -1.37 8.28 37.16 0.31 -1.07 16 4 C 0.13 1.58 8.06 -2.97 -0.02 1.56 16 5 N -1.02 -16.55 3.72 -112.59 -0.42 -16.97 16 6 S 2.70 56.76 6.16 -107.50 -0.66 56.10 16 7 O -0.98 -22.19 17.23 -57.17 -0.99 -23.17 16 8 O -0.94 -22.18 13.49 -67.23 -0.91 -23.08 16 9 C -0.79 -18.28 6.00 -39.29 -0.24 -18.51 16 10 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 11 C -0.18 -4.68 8.70 -38.87 -0.34 -5.02 16 12 C 0.14 3.58 5.58 -106.82 -0.60 2.99 16 13 C -0.44 -10.79 9.05 -37.75 -0.34 -11.13 16 14 H 0.09 2.06 7.91 -52.49 -0.41 1.64 16 15 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 16 N -0.77 -18.24 10.95 55.55 0.61 -17.63 16 17 Si 0.92 17.10 29.59 -169.99 -5.03 12.07 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 C -0.24 -5.74 9.80 -38.87 -0.38 -6.12 16 22 C 0.00 0.00 9.49 -39.66 -0.38 -0.37 16 23 C 0.17 2.28 4.38 -68.02 -0.30 1.98 16 24 H 0.13 1.53 8.10 -51.93 -0.42 1.11 16 25 C 0.45 6.67 6.24 36.00 0.22 6.90 16 26 O -0.45 -8.64 13.69 -26.92 -0.37 -9.01 16 27 O -0.52 -5.61 13.42 -39.28 -0.53 -6.14 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 7.94 -51.93 -0.41 0.06 16 31 H 0.06 0.81 7.99 -51.93 -0.42 0.39 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.60 7.46 -51.93 -0.39 0.21 16 34 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 35 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.10 2.31 7.59 -52.49 -0.40 1.91 16 37 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 38 H 0.29 6.14 8.30 -40.82 -0.34 5.81 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.10 2.14 7.60 -52.49 -0.40 1.74 16 41 H 0.41 2.81 9.10 45.56 0.41 3.22 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -33.82 357.04 -9.71 -43.53 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.41 Total: 8.59 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -2.39 Total: -29.66 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.19 Total: -34.60 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -2.79 Total: -61.40 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -0.66 Total: 56.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.82 -9.71 -43.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646052508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.518 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds