Wall clock time and date at job start Tue Mar 31 2020 21:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 119.99974 * 2 1 4 4 H 1.48502 * 109.47090 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47183 * 120.00137 * 3 2 1 6 6 H 1.48504 * 109.47173 * 240.00311 * 3 2 1 7 7 C 1.38655 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00027 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.35741 * 117.00161 * 174.94187 * 9 7 2 11 11 C 1.38876 * 120.07311 * 185.26076 * 10 9 7 12 12 C 1.38103 * 119.93250 * 179.70132 * 11 10 9 13 13 C 1.38297 * 120.06763 * 0.59928 * 12 11 10 14 14 C 1.50706 * 119.93052 * 179.69848 * 13 12 11 15 15 C 1.50701 * 109.47021 * 269.97891 * 14 13 12 16 16 O 1.21282 * 119.99929 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99421 * 180.02562 * 15 14 13 18 18 C 1.46510 * 119.99516 * 180.02562 * 17 15 14 19 19 H 1.08995 * 109.64074 * 325.42586 * 18 17 15 20 20 C 1.53876 * 109.64319 * 204.99962 * 18 17 15 21 21 C 1.55045 * 106.62240 * 192.96542 * 20 18 17 22 22 S 1.83286 * 102.56645 * 42.43193 * 21 20 18 23 23 O 1.42102 * 109.35338 * 90.19171 * 22 21 20 24 24 O 1.42102 * 109.35515 * 223.38606 * 22 21 20 25 25 C 1.54162 * 109.64890 * 85.72465 * 18 17 15 26 26 C 1.38304 * 120.13801 * 359.67942 * 13 12 11 27 27 C 1.38095 * 120.06835 * 0.02562 * 26 13 12 28 28 H 0.97004 * 120.00173 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.03202 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96298 * 180.31978 * 12 11 10 31 31 H 1.09000 * 109.46543 * 29.98175 * 14 13 12 32 32 H 1.09000 * 109.46616 * 149.97569 * 14 13 12 33 33 H 0.96997 * 120.00770 * 359.97438 * 17 15 14 34 34 H 1.09003 * 110.02704 * 312.25471 * 20 18 17 35 35 H 1.08994 * 110.03063 * 73.62100 * 20 18 17 36 36 H 1.09006 * 110.78979 * 160.70074 * 21 20 18 37 37 H 1.08999 * 110.78680 * 284.16191 * 21 20 18 38 38 H 1.08998 * 110.31391 * 266.66456 * 25 18 17 39 39 H 1.08997 * 110.31809 * 28.85244 * 25 18 17 40 40 H 1.08005 * 119.96217 * 180.02562 * 26 13 12 41 41 H 1.07999 * 120.03035 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 1.2845 2.7464 -0.0006 5 1 3.1033 1.6964 1.2125 6 1 3.1033 1.6964 -1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0698 -3.5046 -0.1077 11 6 1.4364 -4.7350 -0.2243 12 6 2.1872 -5.8884 -0.3393 13 6 3.5685 -5.8203 -0.3261 14 6 4.3847 -7.0815 -0.4451 15 6 4.6505 -7.6394 0.9294 16 8 4.2191 -7.0692 1.9091 17 7 5.3675 -8.7719 1.0699 18 6 5.6254 -9.3145 2.4061 19 1 5.7460 -8.4968 3.1166 20 6 6.9045 -10.1695 2.3792 21 6 6.9325 -10.9676 3.7082 22 16 5.1902 -11.5080 3.8857 23 8 5.0223 -12.7706 3.2556 24 8 4.7756 -11.3262 5.2326 25 6 4.4445 -10.2051 2.8407 26 6 4.2022 -4.5970 -0.2044 27 6 3.4571 -3.4395 -0.0951 28 1 -0.4850 -0.8401 0.0004 29 1 0.3578 -4.7893 -0.2294 30 1 1.6952 -6.8450 -0.4352 31 1 3.8356 -7.8153 -1.0351 32 1 5.3318 -6.8564 -0.9353 33 1 5.7121 -9.2281 0.2864 34 1 6.8773 -10.8553 1.5324 35 1 7.7819 -9.5265 2.3104 36 1 7.5982 -11.8272 3.6293 37 1 7.2250 -10.3254 4.5389 38 1 3.7242 -9.6240 3.4166 39 1 3.9636 -10.6482 1.9687 40 1 5.2811 -4.5471 -0.1948 41 1 3.9526 -2.4846 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649702710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:42 Heat of formation + Delta-G solvation = -111.430882 kcal Electronic energy + Delta-G solvation = -26039.512280 eV Core-core repulsion = 22012.397515 eV Total energy + Delta-G solvation = -4027.114766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20208 -39.02585 -37.52830 -37.33702 -36.51785 -36.37821 -33.39616 -32.51027 -31.37731 -30.24116 -29.91669 -26.88142 -25.44697 -24.72269 -22.16263 -21.97048 -21.22713 -20.27887 -19.28648 -18.38610 -17.64892 -17.45579 -16.88808 -16.82079 -16.22950 -15.86624 -15.53813 -14.97193 -14.66896 -14.58050 -14.32578 -14.05927 -13.88021 -13.66009 -13.51481 -13.30294 -13.16821 -12.90366 -12.73973 -12.60482 -12.56999 -12.45184 -11.83512 -11.79487 -11.32260 -11.25193 -11.09809 -10.93232 -10.90844 -10.77703 -10.30245 -10.29073 -9.90989 -9.50518 -9.41226 -8.76776 -8.23645 -7.26072 -6.77554 -4.06441 -0.46883 1.98829 2.15805 2.16749 2.54262 2.85907 3.11451 3.23294 3.28382 3.44943 3.56072 3.76918 3.93705 4.05346 4.11433 4.25647 4.39575 4.46853 4.79385 4.87210 4.99266 5.05997 5.07508 5.11915 5.15905 5.20672 5.34667 5.38038 5.55672 5.63669 5.75224 6.02763 6.13360 6.33306 6.60233 6.81326 7.02269 7.19369 7.20360 7.29825 7.55862 7.71775 8.09807 8.39598 8.91585 9.60492 10.66445 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.001943 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.100509 B =14406.641859 C =14444.544929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.009 3.991 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.472 4.472 8 H 0.084 0.916 9 O -0.202 6.202 10 C 0.160 3.840 11 C -0.194 4.194 12 C -0.059 4.059 13 C -0.172 4.172 14 C -0.079 4.079 15 C 0.511 3.489 16 O -0.513 6.513 17 N -0.731 5.731 18 C 0.154 3.846 19 H 0.111 0.889 20 C -0.129 4.129 21 C -0.587 4.587 22 S 2.393 3.607 23 O -0.936 6.936 24 O -0.934 6.934 25 C -0.610 4.610 26 C -0.056 4.056 27 C -0.229 4.229 28 H 0.282 0.718 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.641 -22.431 1.131 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.196 4.196 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.547 4.547 8 H 0.101 0.899 9 O -0.106 6.106 10 C 0.107 3.893 11 C -0.214 4.214 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.119 4.119 15 C 0.298 3.702 16 O -0.386 6.386 17 N -0.386 5.386 18 C 0.047 3.953 19 H 0.129 0.871 20 C -0.167 4.167 21 C -0.717 4.717 22 S 2.575 3.425 23 O -0.933 6.933 24 O -0.931 6.931 25 C -0.741 4.741 26 C -0.074 4.074 27 C -0.248 4.248 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.123 0.877 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.411 -20.989 2.381 26.148 hybrid contribution 0.847 -1.352 -0.755 1.765 sum 16.258 -22.341 1.626 27.678 Atomic orbital electron populations 1.70572 1.06561 1.31658 1.42453 1.26550 0.96851 1.01146 0.95044 0.83106 0.74485 0.73333 0.77077 1.19768 1.20724 1.20742 1.22207 0.93090 0.82199 1.57254 0.89884 1.83663 1.35583 1.12272 1.79070 1.19240 0.90317 0.87389 0.92398 1.20139 0.99395 0.90395 1.11436 1.20385 0.92785 0.96561 0.97965 1.18626 0.93189 0.92555 1.12933 1.20410 1.01452 0.96906 0.93123 1.21184 0.77036 0.79332 0.92682 1.90762 1.48653 1.58542 1.40630 1.46068 1.57385 1.27574 1.07592 1.21216 0.89828 0.96434 0.87860 0.87139 1.22456 0.99146 0.99311 0.95825 1.30598 1.24101 1.11198 1.05754 1.08998 0.79814 0.77261 0.76447 1.93632 1.84682 1.37343 1.77598 1.93640 1.80070 1.86782 1.32627 1.31081 1.09765 1.16692 1.16525 1.20517 0.98088 0.91774 0.97022 1.21117 0.93723 0.98928 1.11011 0.90790 0.86696 0.87331 0.88755 0.88749 0.76286 0.88797 0.87565 0.83984 0.83988 0.83548 0.84000 0.87715 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.70 55.48 0.76 -25.74 16 2 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 3 Si 1.10 23.79 29.92 -169.99 -5.09 18.71 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.47 -13.41 9.49 30.89 0.29 -13.12 16 8 H 0.08 2.22 5.20 -52.49 -0.27 1.94 16 9 O -0.20 -5.77 9.16 0.05 0.00 -5.77 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 12 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 13 C -0.17 -2.83 4.38 -104.57 -0.46 -3.29 16 14 C -0.08 -0.86 5.83 -29.03 -0.17 -1.03 16 15 C 0.51 5.91 7.80 -10.99 -0.09 5.83 16 16 O -0.51 -8.59 15.69 5.56 0.09 -8.50 16 17 N -0.73 -4.99 5.05 -52.77 -0.27 -5.26 16 18 C 0.15 0.94 2.88 -66.86 -0.19 0.75 16 19 H 0.11 0.83 7.57 -51.93 -0.39 0.44 16 20 C -0.13 -0.36 5.98 -25.19 -0.15 -0.51 16 21 C -0.59 -1.71 7.31 38.24 0.28 -1.43 16 22 S 2.39 15.34 6.10 -107.50 -0.66 14.68 16 23 O -0.94 -9.00 18.15 -57.71 -1.05 -10.05 16 24 O -0.93 -10.02 18.15 -57.71 -1.05 -11.07 16 25 C -0.61 -3.87 6.91 37.76 0.26 -3.61 16 26 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 27 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 28 H 0.28 8.69 7.97 -40.82 -0.33 8.36 16 29 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.40 1.33 8.60 -40.82 -0.35 0.98 16 34 H 0.09 0.11 8.12 -51.93 -0.42 -0.32 16 35 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.15 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.14 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -40.65 362.57 -8.97 -49.62 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.07 Total: 3.30 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.10 Total: -25.40 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.49 Total: -31.00 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -2.01 Total: -35.38 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.09 Total: 18.71 kcal Atomic # 16 Polarization: 15.34 SS G_CDS: -0.66 Total: 14.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.65 -8.97 -49.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.812 kcal (2) G-P(sol) polarization free energy of solvation -40.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds