Wall clock time and date at job start Tue Mar 31 2020 21:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 119.99974 * 2 1 4 4 H 1.48502 * 109.47090 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47183 * 120.00137 * 3 2 1 6 6 H 1.48504 * 109.47173 * 240.00311 * 3 2 1 7 7 C 1.38655 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00027 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.35741 * 117.00161 * 174.94187 * 9 7 2 11 11 C 1.38876 * 120.07311 * 185.26076 * 10 9 7 12 12 C 1.38103 * 119.93250 * 179.70132 * 11 10 9 13 13 C 1.38297 * 120.06763 * 0.59928 * 12 11 10 14 14 C 1.50706 * 119.93052 * 179.69848 * 13 12 11 15 15 C 1.50701 * 109.47021 * 269.97891 * 14 13 12 16 16 O 1.21282 * 119.99929 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99421 * 180.02562 * 15 14 13 18 18 C 1.46510 * 119.99516 * 180.02562 * 17 15 14 19 19 H 1.08995 * 109.64074 * 325.42586 * 18 17 15 20 20 C 1.53876 * 109.64319 * 204.99962 * 18 17 15 21 21 C 1.55045 * 106.62240 * 192.96542 * 20 18 17 22 22 S 1.83286 * 102.56645 * 42.43193 * 21 20 18 23 23 O 1.42102 * 109.35338 * 90.19171 * 22 21 20 24 24 O 1.42102 * 109.35515 * 223.38606 * 22 21 20 25 25 C 1.54162 * 109.64890 * 85.72465 * 18 17 15 26 26 C 1.38304 * 120.13801 * 359.67942 * 13 12 11 27 27 C 1.38095 * 120.06835 * 0.02562 * 26 13 12 28 28 H 0.97004 * 120.00173 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.03202 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96298 * 180.31978 * 12 11 10 31 31 H 1.09000 * 109.46543 * 29.98175 * 14 13 12 32 32 H 1.09000 * 109.46616 * 149.97569 * 14 13 12 33 33 H 0.96997 * 120.00770 * 359.97438 * 17 15 14 34 34 H 1.09003 * 110.02704 * 312.25471 * 20 18 17 35 35 H 1.08994 * 110.03063 * 73.62100 * 20 18 17 36 36 H 1.09006 * 110.78979 * 160.70074 * 21 20 18 37 37 H 1.08999 * 110.78680 * 284.16191 * 21 20 18 38 38 H 1.08998 * 110.31391 * 266.66456 * 25 18 17 39 39 H 1.08997 * 110.31809 * 28.85244 * 25 18 17 40 40 H 1.08005 * 119.96217 * 180.02562 * 26 13 12 41 41 H 1.07999 * 120.03035 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 1.2845 2.7464 -0.0006 5 1 3.1033 1.6964 1.2125 6 1 3.1033 1.6964 -1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0698 -3.5046 -0.1077 11 6 1.4364 -4.7350 -0.2243 12 6 2.1872 -5.8884 -0.3393 13 6 3.5685 -5.8203 -0.3261 14 6 4.3847 -7.0815 -0.4451 15 6 4.6505 -7.6394 0.9294 16 8 4.2191 -7.0692 1.9091 17 7 5.3675 -8.7719 1.0699 18 6 5.6254 -9.3145 2.4061 19 1 5.7460 -8.4968 3.1166 20 6 6.9045 -10.1695 2.3792 21 6 6.9325 -10.9676 3.7082 22 16 5.1902 -11.5080 3.8857 23 8 5.0223 -12.7706 3.2556 24 8 4.7756 -11.3262 5.2326 25 6 4.4445 -10.2051 2.8407 26 6 4.2022 -4.5970 -0.2044 27 6 3.4571 -3.4395 -0.0951 28 1 -0.4850 -0.8401 0.0004 29 1 0.3578 -4.7893 -0.2294 30 1 1.6952 -6.8450 -0.4352 31 1 3.8356 -7.8153 -1.0351 32 1 5.3318 -6.8564 -0.9353 33 1 5.7121 -9.2281 0.2864 34 1 6.8773 -10.8553 1.5324 35 1 7.7819 -9.5265 2.3104 36 1 7.5982 -11.8272 3.6293 37 1 7.2250 -10.3254 4.5389 38 1 3.7242 -9.6240 3.4166 39 1 3.9636 -10.6482 1.9687 40 1 5.2811 -4.5471 -0.1948 41 1 3.9526 -2.4846 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649702710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:42 Heat of formation + Delta-G solvation = -144.877001 kcal Electronic energy + Delta-G solvation = -26040.962613 eV Core-core repulsion = 22012.397515 eV Total energy + Delta-G solvation = -4028.565098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22539 -40.58296 -38.56320 -38.13578 -37.61369 -37.06174 -34.47112 -34.04286 -32.69039 -31.85139 -30.49001 -28.15319 -26.85964 -25.81871 -23.64273 -22.99533 -22.16064 -21.37035 -20.25179 -19.82822 -18.77262 -18.24178 -18.00041 -17.47792 -17.08853 -16.89370 -16.57129 -16.06608 -15.95538 -15.69497 -15.62373 -15.23540 -15.06563 -14.93286 -14.79526 -14.68063 -14.24007 -13.62179 -13.37388 -13.26944 -13.17571 -13.03223 -12.98922 -12.92210 -12.72797 -12.43155 -12.34466 -12.19568 -12.06992 -11.94115 -11.82960 -11.35985 -11.28359 -10.92751 -10.72361 -10.18885 -9.83648 -9.00509 -8.94537 -6.25635 -0.95720 0.54066 0.60015 1.47252 1.52380 1.60100 1.71762 1.77945 2.17795 2.35418 2.64677 2.84048 3.05457 3.13020 3.33404 3.36934 3.58341 3.66739 3.82521 3.93680 3.99709 4.05357 4.11745 4.20200 4.46247 4.52431 4.56853 4.65351 4.69925 4.76935 4.80892 4.94920 5.00730 5.01998 5.20979 5.23790 5.42189 5.50439 5.69599 5.72775 6.05555 6.28446 6.60263 6.85619 7.34238 7.62115 8.49076 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.001943 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.100509 B =14406.641859 C =14444.544929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.047 4.047 3 Si 1.146 2.854 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.091 0.909 9 O -0.255 6.255 10 C 0.112 3.888 11 C -0.209 4.209 12 C -0.059 4.059 13 C -0.142 4.142 14 C -0.079 4.079 15 C 0.512 3.488 16 O -0.576 6.576 17 N -0.707 5.707 18 C 0.146 3.854 19 H 0.094 0.906 20 C -0.122 4.122 21 C -0.555 4.555 22 S 2.394 3.606 23 O -0.971 6.971 24 O -0.989 6.989 25 C -0.609 4.609 26 C -0.059 4.059 27 C -0.242 4.242 28 H 0.259 0.741 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.425 0.575 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.257 -25.290 -0.350 33.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.243 4.243 3 Si 0.961 3.039 4 H -0.198 1.198 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.563 4.563 8 H 0.108 0.892 9 O -0.163 6.163 10 C 0.063 3.937 11 C -0.228 4.228 12 C -0.077 4.077 13 C -0.143 4.143 14 C -0.119 4.119 15 C 0.300 3.700 16 O -0.454 6.454 17 N -0.362 5.362 18 C 0.038 3.962 19 H 0.112 0.888 20 C -0.161 4.161 21 C -0.689 4.689 22 S 2.582 3.418 23 O -0.968 6.968 24 O -0.986 6.986 25 C -0.739 4.739 26 C -0.077 4.077 27 C -0.262 4.262 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.166 0.834 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.188 0.812 37 H 0.174 0.826 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.161 0.839 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.056 -23.986 0.872 31.279 hybrid contribution -0.370 -0.902 -0.334 1.031 sum 19.686 -24.889 0.538 31.738 Atomic orbital electron populations 1.70712 1.07758 1.29959 1.46837 1.28452 0.96933 1.04982 0.93886 0.82585 0.73767 0.68717 0.78797 1.19777 1.18603 1.18178 1.22588 0.93652 0.82958 1.57138 0.89184 1.83640 1.36911 1.13232 1.82534 1.19848 0.91736 0.87382 0.94775 1.20456 0.99881 0.90784 1.11666 1.20906 0.93715 0.96692 0.96340 1.19330 0.93278 0.94601 1.07111 1.20571 1.02926 0.94665 0.93706 1.21195 0.76830 0.80048 0.91933 1.90777 1.51518 1.60685 1.42419 1.45779 1.55469 1.25961 1.08945 1.21391 0.91271 0.96487 0.87010 0.88801 1.22551 0.97651 0.99514 0.96390 1.30436 1.19390 1.12360 1.06711 1.08725 0.81676 0.76530 0.74905 1.93579 1.86144 1.39392 1.77719 1.93568 1.82221 1.87306 1.35478 1.30992 1.09892 1.16392 1.16666 1.20979 0.99898 0.91028 0.95774 1.21259 0.93064 1.00247 1.11598 0.93290 0.87126 0.83433 0.84890 0.84741 0.73623 0.86019 0.85325 0.81175 0.82582 0.85571 0.82906 0.83936 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.91 13.70 21.61 0.30 -58.61 16 2 C -0.05 -2.76 5.49 84.83 0.47 -2.30 16 3 Si 1.15 49.07 29.92 68.60 2.05 51.13 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 7 C -0.49 -29.43 9.49 67.92 0.64 -28.79 16 8 H 0.09 5.06 5.20 -2.91 -0.02 5.05 16 9 O -0.26 -15.77 9.16 -22.72 -0.21 -15.98 16 10 C 0.11 5.80 6.65 22.58 0.15 5.95 16 11 C -0.21 -9.16 9.99 22.39 0.22 -8.94 16 12 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 13 C -0.14 -4.16 4.38 -19.83 -0.09 -4.25 16 14 C -0.08 -1.24 5.83 29.10 0.17 -1.07 16 15 C 0.51 9.59 7.80 87.66 0.68 10.27 16 16 O -0.58 -18.03 15.69 -3.04 -0.05 -18.08 16 17 N -0.71 -6.04 5.05 -439.26 -2.22 -8.26 16 18 C 0.15 1.26 2.88 45.68 0.13 1.39 16 19 H 0.09 1.20 7.57 -2.39 -0.02 1.19 16 20 C -0.12 -0.01 5.98 31.59 0.19 0.18 16 21 C -0.56 -0.86 7.31 72.68 0.53 -0.33 16 22 S 2.39 27.77 6.10 -56.49 -0.34 27.43 16 23 O -0.97 -17.53 18.15 -127.49 -2.31 -19.84 16 24 O -0.99 -21.72 18.15 -127.49 -2.31 -24.04 16 25 C -0.61 -6.71 6.91 72.38 0.50 -6.21 16 26 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 27 C -0.24 -10.97 9.17 22.39 0.21 -10.77 16 28 H 0.26 17.36 7.97 -92.71 -0.74 16.62 16 29 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.13 1.20 8.08 -2.39 -0.02 1.18 16 32 H 0.13 1.18 8.08 -2.39 -0.02 1.16 16 33 H 0.42 -0.03 8.60 -92.71 -0.80 -0.83 16 34 H 0.12 -0.55 8.12 -2.39 -0.02 -0.57 16 35 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.17 -0.48 8.14 -2.38 -0.02 -0.50 16 37 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.15 1.28 8.07 -2.39 -0.02 1.26 16 40 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.12 5.36 5.64 -2.91 -0.02 5.35 16 Total: -1.00 -99.95 362.57 -0.55 -100.49 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.31 Total: 14.16 kcal Atomic # 6 Polarization: -52.65 SS G_CDS: 4.24 Total: -48.41 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.92 Total: -66.87 kcal Atomic # 8 Polarization: -73.06 SS G_CDS: -4.88 Total: -77.94 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.13 kcal Atomic # 16 Polarization: 27.77 SS G_CDS: -0.34 Total: 27.43 kcal Total: -99.95 -0.55 -100.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.382 kcal (2) G-P(sol) polarization free energy of solvation -99.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds