Wall clock time and date at job start Tue Mar 31 2020 21:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48505 * 109.47009 * 239.99207 * 3 2 1 5 5 H 1.48501 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47168 * 119.99559 * 3 2 1 7 7 C 1.38657 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99774 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.35746 * 116.99601 * 174.94141 * 9 7 2 11 11 C 1.38887 * 120.06468 * 185.25736 * 10 9 7 12 12 C 1.38094 * 119.92843 * 179.71952 * 11 10 9 13 13 C 1.38303 * 120.07224 * 0.55652 * 12 11 10 14 14 C 1.50701 * 119.93434 * 179.74232 * 13 12 11 15 15 C 1.50699 * 109.47162 * 269.97992 * 14 13 12 16 16 O 1.21285 * 119.99860 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00203 * 179.97438 * 15 14 13 18 18 C 1.46504 * 120.00146 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.64091 * 325.42932 * 18 17 15 20 20 C 1.53873 * 109.64685 * 85.72181 * 18 17 15 21 21 C 1.55048 * 106.62050 * 167.03274 * 20 18 17 22 22 S 1.83291 * 102.56919 * 317.56664 * 21 20 18 23 23 O 1.42098 * 109.35371 * 269.81481 * 22 21 20 24 24 O 1.42099 * 109.47333 * 136.64537 * 22 21 20 25 25 C 1.54164 * 109.64609 * 205.00039 * 18 17 15 26 26 C 1.38308 * 120.13560 * 359.72524 * 13 12 11 27 27 C 1.38101 * 120.06646 * 359.97438 * 26 13 12 28 28 H 0.96993 * 120.00426 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03228 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96343 * 180.25535 * 12 11 10 31 31 H 1.09004 * 109.46891 * 29.97532 * 14 13 12 32 32 H 1.09000 * 109.47217 * 149.97936 * 14 13 12 33 33 H 0.96996 * 119.99533 * 0.02562 * 17 15 14 34 34 H 1.08996 * 110.02975 * 286.32455 * 20 18 17 35 35 H 1.09006 * 110.02697 * 47.74443 * 20 18 17 36 36 H 1.09000 * 110.78774 * 199.29671 * 21 20 18 37 37 H 1.09000 * 110.79272 * 75.83995 * 21 20 18 38 38 H 1.09003 * 110.31839 * 331.14249 * 25 18 17 39 39 H 1.09009 * 110.31719 * 93.22905 * 25 18 17 40 40 H 1.07999 * 119.96438 * 179.97438 * 26 13 12 41 41 H 1.08006 * 120.02957 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1035 1.6963 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5046 -0.1056 11 6 1.4366 -4.7351 -0.2220 12 6 2.1874 -5.8885 -0.3356 13 6 3.5687 -5.8204 -0.3220 14 6 4.3850 -7.0816 -0.4403 15 6 4.6503 -7.6391 0.9344 16 8 4.2194 -7.0682 1.9138 17 7 5.3664 -8.7722 1.0754 18 6 5.6238 -9.3144 2.4119 19 1 5.7451 -8.4965 3.1220 20 6 4.4444 -10.2022 2.8460 21 6 4.9201 -10.9940 4.0913 22 16 6.6219 -11.4885 3.6234 23 8 6.5829 -12.7494 2.9694 24 8 7.4934 -11.2908 4.7283 25 6 6.9047 -10.1720 2.3853 26 6 4.2024 -4.5971 -0.2003 27 6 3.4571 -3.4395 -0.0925 28 1 -0.4850 -0.8399 -0.0004 29 1 0.3580 -4.7893 -0.2278 30 1 1.6954 -6.8453 -0.4304 31 1 3.8360 -7.8156 -1.0303 32 1 5.3323 -6.8567 -0.9302 33 1 5.7113 -9.2285 0.2921 34 1 3.5856 -9.5824 3.1034 35 1 4.1809 -10.8914 2.0437 36 1 4.2936 -11.8708 4.2548 37 1 4.9318 -10.3554 4.9746 38 1 7.0485 -10.6071 1.3963 39 1 7.7696 -9.5692 2.6623 40 1 5.2812 -4.5472 -0.1895 41 1 3.9527 -2.4844 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649702711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:45 Heat of formation + Delta-G solvation = -111.586320 kcal Electronic energy + Delta-G solvation = -25991.585208 eV Core-core repulsion = 21964.463702 eV Total energy + Delta-G solvation = -4027.121506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22121 -39.03418 -37.57353 -37.32187 -36.55523 -36.39841 -33.41558 -32.50923 -31.36338 -30.25231 -30.05384 -26.84169 -25.30364 -24.72845 -22.26157 -21.98054 -21.16351 -20.36588 -19.35434 -18.39312 -17.66232 -17.38964 -16.95060 -16.74851 -16.25070 -16.02024 -15.51189 -14.94265 -14.69711 -14.50210 -14.38665 -14.09449 -13.89417 -13.65908 -13.51491 -13.25493 -13.14235 -12.91788 -12.77768 -12.64820 -12.56458 -12.51939 -11.92857 -11.75807 -11.38011 -11.26313 -11.10775 -10.93199 -10.87681 -10.78214 -10.30777 -10.29637 -9.91789 -9.50025 -9.41863 -8.77399 -8.24431 -7.26823 -6.78200 -4.07111 -0.53116 1.91622 2.15683 2.16200 2.53227 2.90745 3.02247 3.23020 3.28011 3.44550 3.49264 3.70062 4.04277 4.08664 4.10866 4.22926 4.40136 4.46444 4.79112 4.86719 4.98755 5.06559 5.10183 5.13767 5.16224 5.21022 5.39550 5.45021 5.55434 5.63364 5.74374 6.02723 6.12607 6.32539 6.59492 6.80547 7.01532 7.18660 7.19572 7.29288 7.55271 7.71010 8.08244 8.38927 8.90854 9.59712 10.65789 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.001892 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.312663 B =14794.995917 C =15020.541119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.009 3.991 3 Si 1.096 2.904 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.472 4.472 8 H 0.084 0.916 9 O -0.202 6.202 10 C 0.160 3.840 11 C -0.195 4.195 12 C -0.059 4.059 13 C -0.171 4.171 14 C -0.079 4.079 15 C 0.510 3.490 16 O -0.515 6.515 17 N -0.732 5.732 18 C 0.155 3.845 19 H 0.111 0.889 20 C -0.136 4.136 21 C -0.582 4.582 22 S 2.396 3.604 23 O -0.934 6.934 24 O -0.934 6.934 25 C -0.609 4.609 26 C -0.056 4.056 27 C -0.228 4.228 28 H 0.282 0.718 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.403 0.597 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.947 -22.550 1.896 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.196 4.196 3 Si 0.920 3.080 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.547 4.547 8 H 0.101 0.899 9 O -0.106 6.106 10 C 0.106 3.894 11 C -0.214 4.214 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.119 4.119 15 C 0.297 3.703 16 O -0.388 6.388 17 N -0.386 5.386 18 C 0.048 3.952 19 H 0.128 0.872 20 C -0.176 4.176 21 C -0.713 4.713 22 S 2.578 3.422 23 O -0.931 6.931 24 O -0.931 6.931 25 C -0.738 4.738 26 C -0.074 4.074 27 C -0.248 4.248 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.238 0.762 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.123 0.877 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.742 -21.093 2.949 24.819 hybrid contribution 0.078 -1.345 -0.628 1.486 sum 12.820 -22.438 2.321 25.946 Atomic orbital electron populations 1.70569 1.06557 1.31650 1.42466 1.26550 0.96851 1.01146 0.95041 0.83107 0.74486 0.73330 0.77091 1.20737 1.19770 1.20722 1.22207 0.93096 0.82197 1.57242 0.89880 1.83663 1.35572 1.12271 1.79083 1.19243 0.90312 0.87394 0.92410 1.20137 0.99382 0.90392 1.11472 1.20381 0.92763 0.96555 0.97994 1.18625 0.93186 0.92542 1.12913 1.20411 1.01464 0.96912 0.93135 1.21195 0.77036 0.79315 0.92709 1.90762 1.48872 1.58536 1.40618 1.46117 1.57414 1.27544 1.07567 1.21205 0.89534 0.96554 0.87914 0.87155 1.22690 1.00699 0.99128 0.95104 1.30589 1.22411 1.11114 1.07181 1.08922 0.79040 0.77036 0.77209 1.93637 1.86533 1.37209 1.75704 1.93637 1.62883 1.86607 1.50016 1.30929 1.06271 1.17544 1.19076 1.20525 0.98107 0.91785 0.96984 1.21119 0.93727 0.98929 1.10998 0.90801 0.86699 0.87315 0.88724 0.88774 0.76245 0.87473 0.89076 0.84034 0.84000 0.83855 0.83528 0.87720 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.38 13.70 55.48 0.76 -25.62 16 2 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 3 Si 1.10 23.73 29.92 -169.99 -5.09 18.64 16 4 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.47 -13.36 9.49 30.89 0.29 -13.06 16 8 H 0.08 2.21 5.20 -52.49 -0.27 1.94 16 9 O -0.20 -5.74 9.16 0.06 0.00 -5.74 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 12 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 13 C -0.17 -2.80 4.38 -104.57 -0.46 -3.25 16 14 C -0.08 -0.85 5.83 -29.03 -0.17 -1.02 16 15 C 0.51 5.82 7.80 -10.99 -0.09 5.74 16 16 O -0.51 -8.41 15.69 5.55 0.09 -8.32 16 17 N -0.73 -5.07 5.10 -52.77 -0.27 -5.34 16 18 C 0.15 0.96 2.88 -66.87 -0.19 0.77 16 19 H 0.11 0.84 7.57 -51.93 -0.39 0.45 16 20 C -0.14 -0.75 6.08 -25.19 -0.15 -0.91 16 21 C -0.58 -2.42 7.31 38.24 0.28 -2.14 16 22 S 2.40 13.38 6.10 -107.50 -0.66 12.72 16 23 O -0.93 -8.32 18.15 -57.73 -1.05 -9.37 16 24 O -0.93 -8.87 18.15 -57.73 -1.05 -9.92 16 25 C -0.61 -2.31 6.92 37.77 0.26 -2.04 16 26 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 27 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 28 H 0.28 8.64 7.97 -40.82 -0.33 8.31 16 29 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.40 1.47 8.36 -40.82 -0.34 1.12 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.14 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.14 0.27 7.77 -51.93 -0.40 -0.14 16 39 H 0.15 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 2.85 5.64 -52.48 -0.30 2.56 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -39.94 362.22 -8.95 -48.89 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.05 Total: 3.44 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.10 Total: -24.84 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.49 Total: -30.96 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -2.01 Total: -33.35 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -5.09 Total: 18.64 kcal Atomic # 16 Polarization: 13.38 SS G_CDS: -0.66 Total: 12.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.94 -8.95 -48.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.698 kcal (2) G-P(sol) polarization free energy of solvation -39.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds