Wall clock time and date at job start Tue Mar 31 2020 21:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48505 * 109.47009 * 239.99207 * 3 2 1 5 5 H 1.48501 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47168 * 119.99559 * 3 2 1 7 7 C 1.38657 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99774 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.35746 * 116.99601 * 174.94141 * 9 7 2 11 11 C 1.38887 * 120.06468 * 185.25736 * 10 9 7 12 12 C 1.38094 * 119.92843 * 179.71952 * 11 10 9 13 13 C 1.38303 * 120.07224 * 0.55652 * 12 11 10 14 14 C 1.50701 * 119.93434 * 179.74232 * 13 12 11 15 15 C 1.50699 * 109.47162 * 269.97992 * 14 13 12 16 16 O 1.21285 * 119.99860 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00203 * 179.97438 * 15 14 13 18 18 C 1.46504 * 120.00146 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.64091 * 325.42932 * 18 17 15 20 20 C 1.53873 * 109.64685 * 85.72181 * 18 17 15 21 21 C 1.55048 * 106.62050 * 167.03274 * 20 18 17 22 22 S 1.83291 * 102.56919 * 317.56664 * 21 20 18 23 23 O 1.42098 * 109.35371 * 269.81481 * 22 21 20 24 24 O 1.42099 * 109.47333 * 136.64537 * 22 21 20 25 25 C 1.54164 * 109.64609 * 205.00039 * 18 17 15 26 26 C 1.38308 * 120.13560 * 359.72524 * 13 12 11 27 27 C 1.38101 * 120.06646 * 359.97438 * 26 13 12 28 28 H 0.96993 * 120.00426 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03228 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96343 * 180.25535 * 12 11 10 31 31 H 1.09004 * 109.46891 * 29.97532 * 14 13 12 32 32 H 1.09000 * 109.47217 * 149.97936 * 14 13 12 33 33 H 0.96996 * 119.99533 * 0.02562 * 17 15 14 34 34 H 1.08996 * 110.02975 * 286.32455 * 20 18 17 35 35 H 1.09006 * 110.02697 * 47.74443 * 20 18 17 36 36 H 1.09000 * 110.78774 * 199.29671 * 21 20 18 37 37 H 1.09000 * 110.79272 * 75.83995 * 21 20 18 38 38 H 1.09003 * 110.31839 * 331.14249 * 25 18 17 39 39 H 1.09009 * 110.31719 * 93.22905 * 25 18 17 40 40 H 1.07999 * 119.96438 * 179.97438 * 26 13 12 41 41 H 1.08006 * 120.02957 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1035 1.6963 -1.2124 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5046 -0.1056 11 6 1.4366 -4.7351 -0.2220 12 6 2.1874 -5.8885 -0.3356 13 6 3.5687 -5.8204 -0.3220 14 6 4.3850 -7.0816 -0.4403 15 6 4.6503 -7.6391 0.9344 16 8 4.2194 -7.0682 1.9138 17 7 5.3664 -8.7722 1.0754 18 6 5.6238 -9.3144 2.4119 19 1 5.7451 -8.4965 3.1220 20 6 4.4444 -10.2022 2.8460 21 6 4.9201 -10.9940 4.0913 22 16 6.6219 -11.4885 3.6234 23 8 6.5829 -12.7494 2.9694 24 8 7.4934 -11.2908 4.7283 25 6 6.9047 -10.1720 2.3853 26 6 4.2024 -4.5971 -0.2003 27 6 3.4571 -3.4395 -0.0925 28 1 -0.4850 -0.8399 -0.0004 29 1 0.3580 -4.7893 -0.2278 30 1 1.6954 -6.8453 -0.4304 31 1 3.8360 -7.8156 -1.0303 32 1 5.3323 -6.8567 -0.9302 33 1 5.7113 -9.2285 0.2921 34 1 3.5856 -9.5824 3.1034 35 1 4.1809 -10.8914 2.0437 36 1 4.2936 -11.8708 4.2548 37 1 4.9318 -10.3554 4.9746 38 1 7.0485 -10.6071 1.3963 39 1 7.7696 -9.5692 2.6623 40 1 5.2812 -4.5472 -0.1895 41 1 3.9527 -2.4844 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649702711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:44 Heat of formation + Delta-G solvation = -143.972412 kcal Electronic energy + Delta-G solvation = -25992.989574 eV Core-core repulsion = 21964.463702 eV Total energy + Delta-G solvation = -4028.525873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22564 -40.58431 -38.55824 -38.13253 -37.58857 -37.07061 -34.46873 -34.07346 -32.67228 -31.84026 -30.58329 -28.11923 -26.82340 -25.69804 -23.63032 -23.15462 -22.09458 -21.44080 -20.24595 -19.83716 -18.76838 -18.29571 -17.90786 -17.42469 -17.08452 -16.90264 -16.58350 -16.03071 -15.97474 -15.70105 -15.61859 -15.18865 -15.06801 -14.98229 -14.78429 -14.67492 -14.22338 -13.61527 -13.43091 -13.24783 -13.14955 -13.06364 -12.98180 -12.91770 -12.71798 -12.43794 -12.36464 -12.25085 -12.06363 -11.94109 -11.87241 -11.36184 -11.27526 -10.90667 -10.71592 -10.17509 -9.82425 -8.99612 -8.93754 -6.24953 -0.97047 0.55326 0.61055 1.47477 1.49762 1.60184 1.70621 1.78002 2.22633 2.35489 2.58876 2.84927 3.05437 3.13605 3.27948 3.34482 3.61219 3.66274 3.83380 3.93436 4.00042 4.00676 4.12973 4.22164 4.46868 4.50771 4.54874 4.62583 4.70972 4.78169 4.79063 4.91241 5.00467 5.02129 5.21976 5.24789 5.41908 5.51532 5.70790 5.73944 6.06537 6.29459 6.59211 6.86067 7.33049 7.62726 8.49730 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.001892 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.312663 B =14794.995917 C =15020.541119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.047 4.047 3 Si 1.146 2.854 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.487 4.487 8 H 0.090 0.910 9 O -0.255 6.255 10 C 0.112 3.888 11 C -0.207 4.207 12 C -0.056 4.056 13 C -0.141 4.141 14 C -0.080 4.080 15 C 0.513 3.487 16 O -0.574 6.574 17 N -0.709 5.709 18 C 0.147 3.853 19 H 0.095 0.905 20 C -0.138 4.138 21 C -0.571 4.571 22 S 2.408 3.592 23 O -0.968 6.968 24 O -0.979 6.979 25 C -0.588 4.588 26 C -0.060 4.060 27 C -0.243 4.243 28 H 0.259 0.741 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.423 0.577 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.158 0.842 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.798 -25.472 0.623 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.242 4.242 3 Si 0.961 3.039 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.107 0.893 9 O -0.163 6.163 10 C 0.062 3.938 11 C -0.227 4.227 12 C -0.074 4.074 13 C -0.142 4.142 14 C -0.119 4.119 15 C 0.301 3.699 16 O -0.452 6.452 17 N -0.364 5.364 18 C 0.040 3.960 19 H 0.113 0.887 20 C -0.178 4.178 21 C -0.703 4.703 22 S 2.595 3.405 23 O -0.965 6.965 24 O -0.976 6.976 25 C -0.719 4.719 26 C -0.078 4.078 27 C -0.262 4.262 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.262 0.738 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.158 0.842 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.672 -24.155 1.656 28.841 hybrid contribution -0.659 -0.871 -0.267 1.124 sum 15.013 -25.026 1.389 29.217 Atomic orbital electron populations 1.70708 1.07720 1.29981 1.46820 1.28425 0.96947 1.04940 0.93927 0.82586 0.73768 0.68792 0.78757 1.18267 1.19745 1.18646 1.22573 0.93615 0.82990 1.57127 0.89274 1.83638 1.36861 1.13209 1.82560 1.19858 0.91669 0.87439 0.94784 1.20470 0.99941 0.90701 1.11558 1.20914 0.93559 0.96785 0.96169 1.19317 0.93363 0.94450 1.07118 1.20567 1.02820 0.94767 0.93768 1.21166 0.76849 0.79910 0.91967 1.90777 1.51606 1.60524 1.42296 1.45852 1.55630 1.26092 1.08796 1.21289 0.90900 0.96619 0.87193 0.88733 1.22694 0.99723 0.99178 0.96185 1.30523 1.20961 1.11690 1.07102 1.08331 0.78904 0.76696 0.76582 1.93591 1.87113 1.39648 1.76167 1.93582 1.64716 1.87229 1.52108 1.30768 1.05529 1.15959 1.19632 1.20969 0.99797 0.91159 0.95917 1.21247 0.93142 1.00167 1.11684 0.93252 0.86972 0.83125 0.84660 0.85131 0.73765 0.89188 0.87107 0.82416 0.83386 0.80961 0.82189 0.84230 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.50 13.70 21.61 0.30 -58.20 16 2 C -0.05 -2.74 5.49 84.83 0.47 -2.27 16 3 Si 1.15 48.94 29.92 68.60 2.05 51.00 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.49 -29.26 9.49 67.92 0.64 -28.62 16 8 H 0.09 5.00 5.20 -2.91 -0.02 4.99 16 9 O -0.25 -15.60 9.16 -22.70 -0.21 -15.81 16 10 C 0.11 5.73 6.65 22.58 0.15 5.88 16 11 C -0.21 -8.90 9.99 22.39 0.22 -8.68 16 12 C -0.06 -1.82 9.69 22.25 0.22 -1.60 16 13 C -0.14 -4.06 4.38 -19.83 -0.09 -4.14 16 14 C -0.08 -1.21 5.83 29.10 0.17 -1.04 16 15 C 0.51 9.28 7.80 87.66 0.68 9.97 16 16 O -0.57 -17.22 15.69 -3.05 -0.05 -17.26 16 17 N -0.71 -6.14 5.10 -439.26 -2.24 -8.37 16 18 C 0.15 1.29 2.88 45.68 0.13 1.42 16 19 H 0.09 1.22 7.57 -2.39 -0.02 1.21 16 20 C -0.14 -1.09 6.08 31.59 0.19 -0.90 16 21 C -0.57 -3.42 7.31 72.68 0.53 -2.89 16 22 S 2.41 22.07 6.10 -56.49 -0.34 21.73 16 23 O -0.97 -15.39 18.15 -127.47 -2.31 -17.71 16 24 O -0.98 -17.77 18.15 -127.47 -2.31 -20.08 16 25 C -0.59 -2.13 6.92 72.38 0.50 -1.63 16 26 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 27 C -0.24 -10.95 9.17 22.39 0.21 -10.74 16 28 H 0.26 17.24 7.97 -92.71 -0.74 16.50 16 29 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.14 1.12 8.08 -2.38 -0.02 1.10 16 32 H 0.13 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.42 0.28 8.36 -92.71 -0.78 -0.50 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.17 -0.31 7.77 -2.39 -0.02 -0.33 16 39 H 0.16 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 Total: -1.00 -96.35 362.22 -0.54 -96.89 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.33 Total: 14.93 kcal Atomic # 6 Polarization: -51.35 SS G_CDS: 4.24 Total: -47.10 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.94 Total: -66.58 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -4.88 Total: -70.86 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 51.00 kcal Atomic # 16 Polarization: 22.07 SS G_CDS: -0.34 Total: 21.73 kcal Total: -96.35 -0.54 -96.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.079 kcal (2) G-P(sol) polarization free energy of solvation -96.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds