Wall clock time and date at job start Tue Mar 31 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 S 1.81404 * 109.46898 * 240.00271 * 2 1 3 5 5 C 1.81402 * 103.00211 * 60.00019 * 4 2 1 6 6 C 1.50700 * 109.47115 * 179.97438 * 5 4 2 7 7 O 1.20820 * 120.00036 * 0.02562 * 6 5 4 8 8 O 1.34226 * 119.99737 * 179.97438 * 6 5 4 9 9 C 1.50701 * 109.47189 * 120.00693 * 2 1 3 10 10 O 1.21288 * 120.00424 * 119.99968 * 9 2 1 11 11 N 1.34780 * 119.99654 * 299.99592 * 9 2 1 12 12 C 1.39989 * 119.99880 * 175.49209 * 11 9 2 13 13 C 1.38915 * 120.00169 * 215.12025 * 12 11 9 14 14 C 1.38003 * 120.00052 * 180.02562 * 13 12 11 15 15 C 1.38911 * 119.99879 * 0.02656 * 14 13 12 16 16 O 1.35783 * 119.99690 * 179.97438 * 15 14 13 17 17 C 1.34817 * 117.00060 * 5.35003 * 16 15 14 18 18 H 1.08004 * 119.99628 * 354.95470 * 17 16 15 19 19 C 1.38633 * 119.99796 * 174.96442 * 17 16 15 20 20 N 1.31567 * 120.00230 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99603 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47141 * 89.99785 * 21 19 17 23 23 H 1.48499 * 109.46664 * 209.99844 * 21 19 17 24 24 H 1.48496 * 109.47265 * 329.99406 * 21 19 17 25 25 C 1.38903 * 120.00326 * 0.25259 * 15 14 13 26 26 C 1.38008 * 120.00077 * 359.44976 * 25 15 14 27 27 H 1.08992 * 109.47266 * 299.99386 * 1 2 3 28 28 H 1.09005 * 109.47312 * 59.99972 * 1 2 3 29 29 H 1.09004 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46851 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47637 * 300.00225 * 3 2 1 32 32 H 1.09001 * 109.46790 * 60.00773 * 3 2 1 33 33 H 1.08997 * 109.46899 * 300.00486 * 5 4 2 34 34 H 1.09002 * 109.46945 * 59.99619 * 5 4 2 35 35 H 0.96703 * 117.00205 * 180.02562 * 8 6 5 36 36 H 0.97001 * 119.99575 * 355.49570 * 11 9 2 37 37 H 1.08001 * 120.00412 * 0.02562 * 13 12 11 38 38 H 1.07994 * 120.00284 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00111 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.00173 * 179.70331 * 25 15 14 41 41 H 1.08003 * 119.99883 * 180.28165 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.4374 0.1309 -2.8349 6 6 1.8570 -0.4613 -4.1555 7 8 2.5543 -1.4477 -4.1810 8 8 1.4551 0.1063 -5.3035 9 6 2.0323 -0.7106 1.2304 10 8 2.7296 -1.6967 1.1191 11 7 1.7068 -0.2501 2.4545 12 6 2.0936 -0.9624 3.5959 13 6 1.2622 -0.9966 4.7083 14 6 1.6439 -1.6983 5.8337 15 6 2.8596 -2.3699 5.8543 16 8 3.2353 -3.0599 6.9617 17 6 2.3370 -3.1458 7.9634 18 1 1.4016 -2.6099 7.8972 19 6 2.6141 -3.9218 9.0782 20 7 3.7534 -4.5748 9.1586 21 14 1.3697 -4.0402 10.4664 22 1 0.4499 -5.1777 10.2110 23 1 2.0811 -4.2579 11.7516 24 1 0.5890 -2.7792 10.5403 25 6 3.6936 -2.3310 4.7441 26 6 3.3093 -1.6344 3.6165 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4424 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 0.3498 0.1277 -2.7638 34 1 1.8031 1.1553 -2.7638 35 1 1.7492 -0.3096 -6.1255 36 1 1.2044 0.5747 2.5446 37 1 0.3172 -0.4740 4.6925 38 1 0.9974 -1.7252 6.6983 39 1 3.9471 -5.1181 9.9385 40 1 4.6409 -2.8492 4.7619 41 1 3.9557 -1.6079 2.7517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649948435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:23 Heat of formation + Delta-G solvation = -115.197598 kcal Electronic energy + Delta-G solvation = -25861.947201 eV Core-core repulsion = 21834.669098 eV Total energy + Delta-G solvation = -4027.278103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61147 -40.41617 -38.77249 -36.64621 -36.58110 -35.41183 -33.78696 -32.17762 -30.86450 -30.24237 -27.95680 -27.94334 -25.42047 -24.00778 -22.60265 -22.29054 -21.47786 -19.99446 -18.66635 -18.22436 -17.95948 -17.21649 -16.75216 -16.60098 -16.39076 -15.93661 -15.30613 -14.65976 -14.59677 -14.50695 -14.30045 -14.04150 -13.70507 -13.61337 -13.57217 -13.26034 -12.89721 -12.67458 -12.63327 -12.48075 -12.23279 -11.99675 -11.89318 -11.79305 -11.58606 -11.52075 -11.10082 -11.03948 -10.75426 -10.46813 -10.07552 -9.78593 -9.64175 -9.26314 -8.72976 -8.23205 -7.97540 -6.97513 -6.45643 -4.03888 0.81314 1.69377 1.97465 2.02157 2.18238 2.57965 2.70179 3.09996 3.12113 3.14973 3.17581 3.95734 4.22063 4.29184 4.37185 4.43246 4.55429 4.62387 4.73559 4.95454 5.07733 5.10649 5.16453 5.19463 5.31613 5.51834 5.54080 5.66095 5.75960 5.97703 6.09793 6.18127 6.23606 6.78412 6.81051 6.93153 7.12658 7.19655 7.36247 7.38201 7.59869 7.74711 7.98481 8.22582 8.99431 9.69497 10.72166 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.032872 B = 0.001959 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.580697 B =14289.992877 C =14639.166517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.146 4.146 4 S -0.088 6.088 5 C -0.131 4.131 6 C 0.497 3.503 7 O -0.489 6.489 8 O -0.514 6.514 9 C 0.532 3.468 10 O -0.502 6.502 11 N -0.651 5.651 12 C 0.031 3.969 13 C -0.087 4.087 14 C -0.221 4.221 15 C 0.149 3.851 16 O -0.175 6.175 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.179 4.179 26 C -0.066 4.066 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.416 0.584 36 H 0.401 0.599 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 15.528 -22.656 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C -0.204 4.204 4 S 0.139 5.861 5 C -0.279 4.279 6 C 0.337 3.663 7 O -0.375 6.375 8 O -0.327 6.327 9 C 0.315 3.685 10 O -0.376 6.376 11 N -0.296 5.296 12 C -0.061 4.061 13 C -0.107 4.107 14 C -0.240 4.240 15 C 0.094 3.906 16 O -0.078 6.078 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.199 4.199 26 C -0.085 4.085 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.276 0.724 36 H 0.236 0.764 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.507 13.520 -22.249 27.096 hybrid contribution -1.667 1.291 0.276 2.126 sum -9.174 14.810 -21.973 28.042 Atomic orbital electron populations 1.22153 0.90550 1.04369 1.03278 1.23203 1.00425 0.99789 0.96182 1.22166 1.03177 0.91766 1.03333 1.88323 1.67281 1.36878 0.93624 1.23264 1.06829 1.04966 0.92868 1.22210 0.77118 0.81581 0.85395 1.90818 1.34414 1.24791 1.87443 1.84467 1.72300 1.58817 1.17142 1.19464 0.81155 0.84414 0.83426 1.90768 1.35850 1.25397 1.85587 1.43008 1.56523 1.26039 1.04000 1.17213 0.96265 1.05304 0.87289 1.20458 0.97420 0.99940 0.92913 1.20966 0.99173 1.04317 0.99589 1.19430 0.92291 0.91093 0.87743 1.83995 1.40416 1.62291 1.21125 1.21316 0.99304 1.30467 0.95757 0.89049 1.25299 0.97519 0.95459 0.98288 1.70044 1.22059 1.27881 1.29528 0.85707 0.79263 0.79036 0.79379 1.19873 1.20259 1.19221 1.20160 1.01448 1.06294 0.91950 1.20746 0.94225 0.96354 0.97216 0.90802 0.91348 0.90332 0.90318 0.91293 0.90829 0.85902 0.85915 0.72417 0.76408 0.87173 0.85066 0.91973 0.86057 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.22 37.16 0.31 -0.66 16 2 C -0.08 -0.76 0.80 -91.77 -0.07 -0.83 16 3 C -0.15 -0.92 8.21 37.16 0.31 -0.62 16 4 S -0.09 -0.99 18.93 -107.50 -2.04 -3.03 16 5 C -0.13 -0.86 5.65 36.01 0.20 -0.66 16 6 C 0.50 4.11 8.35 36.01 0.30 4.41 16 7 O -0.49 -6.10 16.62 -18.75 -0.31 -6.41 16 8 O -0.51 -2.68 13.42 -39.25 -0.53 -3.21 16 9 C 0.53 7.28 6.34 -10.98 -0.07 7.21 16 10 O -0.50 -9.22 13.30 5.55 0.07 -9.15 16 11 N -0.65 -8.35 5.12 -9.82 -0.05 -8.40 16 12 C 0.03 0.54 6.30 -83.63 -0.53 0.02 16 13 C -0.09 -1.51 9.96 -39.42 -0.39 -1.91 16 14 C -0.22 -4.65 9.16 -39.42 -0.36 -5.01 16 15 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 16 O -0.18 -5.00 9.76 -0.02 0.00 -5.00 16 17 C -0.39 -10.86 9.48 30.88 0.29 -10.57 16 18 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 21 Si 0.94 20.34 29.55 -169.99 -5.02 15.31 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.18 -3.94 9.98 -39.42 -0.39 -4.33 16 26 C -0.07 -1.29 8.69 -39.41 -0.34 -1.63 16 27 H 0.07 0.39 7.67 -51.93 -0.40 -0.01 16 28 H 0.07 0.29 6.68 -51.93 -0.35 -0.05 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.28 6.68 -51.93 -0.35 -0.07 16 32 H 0.07 0.36 7.47 -51.93 -0.39 -0.03 16 33 H 0.12 0.54 6.99 -51.93 -0.36 0.17 16 34 H 0.12 0.52 7.00 -51.92 -0.36 0.16 16 35 H 0.42 0.55 9.10 45.56 0.41 0.96 16 36 H 0.40 3.58 7.68 -40.82 -0.31 3.27 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.13 2.73 5.63 -52.49 -0.30 2.44 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 41 H 0.13 2.51 6.23 -52.48 -0.33 2.18 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -36.87 362.02 -6.59 -43.46 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.83 Total: 5.71 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.11 Total: -10.28 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.71 Total: -32.88 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.76 Total: -23.76 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.04 Total: -3.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.87 -6.59 -43.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649948435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.733 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds