Wall clock time and date at job start Tue Mar 31 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47219 * 239.99976 * 3 2 1 5 5 H 1.48505 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47543 * 119.99784 * 3 2 1 7 7 C 1.37872 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47410 * 59.99499 * 9 7 2 11 11 N 1.46902 * 109.46842 * 179.97438 * 9 7 2 12 12 C 1.46905 * 110.99871 * 204.99751 * 11 9 7 13 13 C 1.53000 * 109.47123 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 11 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 11 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 11 17 17 O 1.42894 * 109.47240 * 184.99627 * 16 13 12 18 18 C 1.42895 * 113.99863 * 179.97438 * 17 16 13 19 19 C 1.50707 * 109.47135 * 179.97438 * 18 17 16 20 20 C 1.33388 * 125.20034 * 90.00302 * 19 18 17 21 21 C 1.38423 * 114.91976 * 179.97438 * 20 19 18 22 22 C 1.33383 * 114.92068 * 359.97438 * 21 20 19 23 23 S 1.75883 * 125.20478 * 269.69876 * 19 18 17 24 24 C 1.53003 * 109.46914 * 299.99068 * 9 7 2 25 25 F 1.39901 * 109.47131 * 300.00495 * 24 9 7 26 26 F 1.39901 * 109.46705 * 60.00221 * 24 9 7 27 27 F 1.39895 * 109.46888 * 180.02562 * 24 9 7 28 28 H 0.97002 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.00896 * 111.00682 * 328.94911 * 11 9 7 30 30 H 1.08992 * 109.47078 * 59.99994 * 12 11 9 31 31 H 1.09004 * 109.46829 * 299.99640 * 12 11 9 32 32 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 33 33 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 34 34 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 35 35 H 1.09001 * 109.47814 * 299.99984 * 18 17 16 36 36 H 1.09006 * 109.47008 * 60.00807 * 18 17 16 37 37 H 1.08005 * 122.54011 * 359.95894 * 20 19 18 38 38 H 1.08000 * 122.53958 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.20369 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8896 11 7 2.2057 -3.6156 0.0005 12 6 1.6031 -4.8236 -0.5790 13 6 2.6249 -5.9622 -0.5612 14 1 2.9263 -6.1639 0.4667 15 8 3.7703 -5.5862 -1.3285 16 6 1.9975 -7.2200 -1.1654 17 8 2.9097 -8.3131 -1.0432 18 6 2.4180 -9.5431 -1.5793 19 6 3.4560 -10.6206 -1.3980 20 6 3.5557 -11.4213 -0.3358 21 6 4.5909 -12.3386 -0.3920 22 6 5.3313 -12.2832 -1.5001 23 16 4.7164 -11.0199 -2.5580 24 6 0.3711 -2.5799 1.2496 25 9 1.1751 -2.5055 2.3921 26 9 -0.5380 -1.5166 1.2491 27 9 -0.3279 -3.7917 1.2499 28 1 -0.4850 0.8400 -0.0004 29 1 3.0541 -3.3661 -0.4853 30 1 1.3013 -4.6218 -1.6067 31 1 0.7296 -5.1106 0.0065 32 1 3.5761 -5.3915 -2.2556 33 1 1.0745 -7.4560 -0.6356 34 1 1.7776 -7.0463 -2.2187 35 1 1.5040 -9.8272 -1.0578 36 1 2.2066 -9.4179 -2.6413 37 1 2.8802 -11.3584 0.5046 38 1 4.7838 -13.0461 0.4008 39 1 6.1767 -12.9195 -1.7164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650157467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:10 Heat of formation + Delta-G solvation = -195.554241 kcal Electronic energy + Delta-G solvation = -27126.570776 eV Core-core repulsion = 22553.951407 eV Total energy + Delta-G solvation = -4572.619369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.31881 -45.98237 -45.55195 -38.90690 -37.99371 -36.80923 -35.06119 -32.66824 -31.50161 -30.06869 -27.71742 -26.16570 -24.51477 -23.95191 -23.15076 -21.40459 -20.76398 -19.55330 -17.63136 -17.53360 -16.88867 -16.77443 -16.53350 -16.40409 -16.08949 -15.57982 -15.48138 -14.95976 -14.73421 -14.30063 -13.73066 -13.45197 -13.21708 -13.09495 -13.00420 -12.86230 -12.72912 -12.62107 -12.41434 -12.20299 -12.11345 -11.95712 -11.82150 -11.80682 -11.28232 -11.04593 -11.00020 -10.83316 -10.76023 -10.46357 -10.28643 -9.83604 -9.72863 -9.38976 -9.01970 -8.70990 -8.65255 -7.68772 -6.18352 -4.38927 0.66236 1.36427 1.74614 2.43450 3.23512 3.28273 3.31438 3.52775 4.23709 4.43881 4.56091 4.59837 4.77729 4.80303 4.91279 4.98547 5.02959 5.09509 5.24364 5.28431 5.32375 5.38295 5.42560 5.56990 5.83685 5.86284 5.99629 6.00732 6.09483 6.19901 6.29011 6.37495 6.83588 6.96886 7.47968 7.67395 7.81801 7.85330 8.26324 8.65814 9.27834 10.73890 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.002170 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.852199 B =12899.277450 C =13513.582419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.061 3.939 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.188 3.812 10 H 0.039 0.961 11 N -0.676 5.676 12 C 0.021 3.979 13 C 0.115 3.885 14 H 0.113 0.887 15 O -0.549 6.549 16 C 0.031 3.969 17 O -0.369 6.369 18 C 0.131 3.869 19 C -0.179 4.179 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.213 4.213 23 S 0.115 5.885 24 C 0.438 3.562 25 F -0.199 7.199 26 F -0.141 7.141 27 F -0.232 7.232 28 H 0.266 0.734 29 H 0.355 0.645 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.368 0.632 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -20.598 -5.433 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.094 0.906 9 C 0.077 3.923 10 H 0.056 0.944 11 N -0.309 5.309 12 C -0.109 4.109 13 C 0.055 3.945 14 H 0.131 0.869 15 O -0.353 6.353 16 C -0.047 4.047 17 O -0.288 6.288 18 C 0.053 3.947 19 C -0.297 4.297 20 C -0.150 4.150 21 C -0.168 4.168 22 C -0.349 4.349 23 S 0.379 5.621 24 C 0.382 3.618 25 F -0.181 7.181 26 F -0.122 7.122 27 F -0.214 7.214 28 H 0.076 0.924 29 H 0.176 0.824 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.214 0.786 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.547 -20.167 -5.538 21.403 hybrid contribution -0.829 0.468 0.167 0.967 sum 3.718 -19.699 -5.371 20.754 Atomic orbital electron populations 1.70378 1.05844 1.27137 1.44785 1.25114 0.95131 1.00151 0.94242 0.86325 0.79360 0.81499 0.78975 1.19901 1.21058 1.19784 1.20875 0.93762 0.88292 1.54698 0.90620 1.20072 0.91312 0.90869 0.90012 0.94386 1.60098 1.08251 1.03647 1.58925 1.22750 0.97815 0.92108 0.98242 1.21981 0.86274 0.89469 0.96750 0.86907 1.86658 1.33525 1.90170 1.24937 1.23328 0.93121 0.87912 1.00298 1.88061 1.42421 1.16745 1.81585 1.20708 0.93000 0.82663 0.98312 1.24179 1.02962 1.02922 0.99595 1.20197 0.99933 0.96322 0.98578 1.20177 0.96353 1.01291 0.98999 1.25695 1.05811 1.04258 0.99115 1.84316 1.25403 1.30907 1.21489 1.22605 0.79866 0.71862 0.87431 1.93004 1.74277 1.96016 1.54757 1.93402 1.68622 1.53900 1.96315 1.92935 1.81957 1.49419 1.97071 0.92378 0.82361 0.95334 0.89418 0.78603 0.92021 0.92948 0.91344 0.92349 0.84085 0.84154 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.24 9.50 55.43 0.53 -22.72 16 2 C 0.06 1.62 5.20 -17.82 -0.09 1.52 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.08 8.33 -34.44 -0.29 -14.37 16 8 H 0.08 1.94 7.62 -52.48 -0.40 1.54 16 9 C 0.19 4.54 2.26 -68.86 -0.16 4.39 16 10 H 0.04 0.97 7.80 -51.93 -0.40 0.57 16 11 N -0.68 -13.83 6.22 -107.94 -0.67 -14.51 16 12 C 0.02 0.35 5.10 -3.82 -0.02 0.33 16 13 C 0.11 1.65 3.52 -26.73 -0.09 1.56 16 14 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 15 O -0.55 -8.11 12.64 -40.11 -0.51 -8.62 16 16 C 0.03 0.36 5.57 37.16 0.21 0.57 16 17 O -0.37 -4.80 10.29 -40.11 -0.41 -5.21 16 18 C 0.13 1.33 6.43 36.01 0.23 1.56 16 19 C -0.18 -1.87 6.14 -36.00 -0.22 -2.09 16 20 C -0.12 -1.15 10.05 -41.21 -0.41 -1.56 16 21 C -0.14 -1.17 10.18 -41.21 -0.42 -1.59 16 22 C -0.21 -1.76 11.23 29.04 0.33 -1.43 16 23 S 0.11 1.09 23.33 -107.50 -2.51 -1.42 16 24 C 0.44 11.04 2.81 37.16 0.10 11.15 16 25 F -0.20 -5.16 16.94 2.25 0.04 -5.12 16 26 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 27 F -0.23 -5.32 15.04 2.25 0.03 -5.29 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.36 7.10 7.61 -39.29 -0.30 6.80 16 30 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 31 H 0.09 1.51 6.03 -51.93 -0.31 1.20 16 32 H 0.37 4.12 9.04 45.56 0.41 4.53 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -30.24 353.89 -7.93 -38.18 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.94 Total: 7.57 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.83 Total: 0.04 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.15 Total: -37.22 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.92 Total: -13.83 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 0.10 Total: -14.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.24 -7.93 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650157467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.375 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds