Wall clock time and date at job start Tue Mar 31 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47219 * 239.99976 * 3 2 1 5 5 H 1.48505 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47543 * 119.99784 * 3 2 1 7 7 C 1.37872 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47410 * 59.99499 * 9 7 2 11 11 N 1.46902 * 109.46842 * 179.97438 * 9 7 2 12 12 C 1.46905 * 110.99871 * 204.99751 * 11 9 7 13 13 C 1.53000 * 109.47123 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47398 * 59.99875 * 13 12 11 15 15 O 1.42903 * 109.46726 * 299.99631 * 13 12 11 16 16 C 1.53002 * 109.47233 * 180.02562 * 13 12 11 17 17 O 1.42894 * 109.47240 * 184.99627 * 16 13 12 18 18 C 1.42895 * 113.99863 * 179.97438 * 17 16 13 19 19 C 1.50707 * 109.47135 * 179.97438 * 18 17 16 20 20 C 1.33388 * 125.20034 * 90.00302 * 19 18 17 21 21 C 1.38423 * 114.91976 * 179.97438 * 20 19 18 22 22 C 1.33383 * 114.92068 * 359.97438 * 21 20 19 23 23 S 1.75883 * 125.20478 * 269.69876 * 19 18 17 24 24 C 1.53003 * 109.46914 * 299.99068 * 9 7 2 25 25 F 1.39901 * 109.47131 * 300.00495 * 24 9 7 26 26 F 1.39901 * 109.46705 * 60.00221 * 24 9 7 27 27 F 1.39895 * 109.46888 * 180.02562 * 24 9 7 28 28 H 0.97002 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.00896 * 111.00682 * 328.94911 * 11 9 7 30 30 H 1.08992 * 109.47078 * 59.99994 * 12 11 9 31 31 H 1.09004 * 109.46829 * 299.99640 * 12 11 9 32 32 H 0.96700 * 114.00234 * 300.00043 * 15 13 12 33 33 H 1.09008 * 109.46873 * 304.99791 * 16 13 12 34 34 H 1.08997 * 109.47047 * 64.99480 * 16 13 12 35 35 H 1.09001 * 109.47814 * 299.99984 * 18 17 16 36 36 H 1.09006 * 109.47008 * 60.00807 * 18 17 16 37 37 H 1.08005 * 122.54011 * 359.95894 * 20 19 18 38 38 H 1.08000 * 122.53958 * 180.02562 * 21 20 19 39 39 H 1.08002 * 125.20369 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8896 11 7 2.2057 -3.6156 0.0005 12 6 1.6031 -4.8236 -0.5790 13 6 2.6249 -5.9622 -0.5612 14 1 2.9263 -6.1639 0.4667 15 8 3.7703 -5.5862 -1.3285 16 6 1.9975 -7.2200 -1.1654 17 8 2.9097 -8.3131 -1.0432 18 6 2.4180 -9.5431 -1.5793 19 6 3.4560 -10.6206 -1.3980 20 6 3.5557 -11.4213 -0.3358 21 6 4.5909 -12.3386 -0.3920 22 6 5.3313 -12.2832 -1.5001 23 16 4.7164 -11.0199 -2.5580 24 6 0.3711 -2.5799 1.2496 25 9 1.1751 -2.5055 2.3921 26 9 -0.5380 -1.5166 1.2491 27 9 -0.3279 -3.7917 1.2499 28 1 -0.4850 0.8400 -0.0004 29 1 3.0541 -3.3661 -0.4853 30 1 1.3013 -4.6218 -1.6067 31 1 0.7296 -5.1106 0.0065 32 1 3.5761 -5.3915 -2.2556 33 1 1.0745 -7.4560 -0.6356 34 1 1.7776 -7.0463 -2.2187 35 1 1.5040 -9.8272 -1.0578 36 1 2.2066 -9.4179 -2.6413 37 1 2.8802 -11.3584 0.5046 38 1 4.7838 -13.0461 0.4008 39 1 6.1767 -12.9195 -1.7164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650157467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:10 Heat of formation + Delta-G solvation = -216.636314 kcal Electronic energy + Delta-G solvation = -27127.484963 eV Core-core repulsion = 22553.951407 eV Total energy + Delta-G solvation = -4573.533556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.33039 -47.97340 -47.63238 -39.86630 -38.86426 -37.85574 -36.63766 -34.50093 -32.39264 -31.32022 -29.20331 -26.99537 -26.51384 -25.23672 -23.84797 -22.66509 -22.60091 -20.21935 -19.33708 -18.79356 -18.63358 -18.36200 -17.86731 -17.54856 -17.22535 -16.99165 -16.78246 -16.39330 -15.96103 -15.59107 -15.16772 -14.97332 -14.83154 -14.54642 -14.38485 -14.22817 -14.14565 -14.01683 -13.90336 -13.77709 -13.70352 -13.45237 -12.96817 -12.83818 -12.71567 -12.61870 -12.56281 -12.48411 -12.09889 -11.74511 -11.67703 -11.37321 -10.96061 -10.66045 -10.63037 -9.71703 -9.41050 -9.34044 -8.18441 -6.44824 -0.02661 0.68670 1.07641 1.44419 1.47228 1.54688 1.75784 2.35845 2.53325 2.63669 2.97100 3.30847 3.54201 3.77418 3.88542 3.98567 4.04762 4.08303 4.13550 4.19261 4.25423 4.35933 4.36885 4.48123 4.54808 4.65590 4.72400 4.74667 4.87157 5.13114 5.18143 5.34008 5.54948 5.55796 5.70486 6.06904 6.15095 6.53737 6.71548 6.86206 7.25462 8.73732 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.024282 B = 0.002170 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.852199 B =12899.277450 C =13513.582419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.194 3.806 10 H 0.024 0.976 11 N -0.680 5.680 12 C 0.024 3.976 13 C 0.126 3.874 14 H 0.093 0.907 15 O -0.564 6.564 16 C 0.037 3.963 17 O -0.393 6.393 18 C 0.129 3.871 19 C -0.203 4.203 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.208 4.208 23 S 0.094 5.906 24 C 0.434 3.566 25 F -0.205 7.205 26 F -0.155 7.155 27 F -0.219 7.219 28 H 0.266 0.734 29 H 0.358 0.642 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.383 0.617 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -21.551 -5.915 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.592 4.592 8 H 0.094 0.906 9 C 0.083 3.917 10 H 0.042 0.958 11 N -0.314 5.314 12 C -0.105 4.105 13 C 0.066 3.934 14 H 0.111 0.889 15 O -0.371 6.371 16 C -0.040 4.040 17 O -0.313 6.313 18 C 0.051 3.949 19 C -0.320 4.320 20 C -0.156 4.156 21 C -0.178 4.178 22 C -0.344 4.344 23 S 0.358 5.642 24 C 0.378 3.622 25 F -0.187 7.187 26 F -0.137 7.137 27 F -0.201 7.201 28 H 0.076 0.924 29 H 0.179 0.821 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.168 0.832 38 H 0.181 0.819 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.228 -21.144 -6.039 22.602 hybrid contribution -1.022 0.657 0.330 1.259 sum 4.206 -20.487 -5.709 21.680 Atomic orbital electron populations 1.70486 1.07041 1.27789 1.45539 1.25894 0.95902 1.03285 0.93840 0.85384 0.78190 0.77694 0.79098 1.18681 1.20741 1.20014 1.21167 0.93972 0.89376 1.54662 0.90644 1.19854 0.91388 0.91721 0.88742 0.95847 1.60031 1.07817 1.03670 1.59901 1.22765 0.98043 0.91154 0.98577 1.21732 0.85552 0.89935 0.96199 0.88947 1.86617 1.33865 1.90328 1.26273 1.23204 0.92850 0.86551 1.01396 1.88009 1.43342 1.17820 1.82166 1.20863 0.93446 0.81511 0.99067 1.24355 1.03727 1.03670 1.00288 1.20496 1.00305 0.96243 0.98589 1.20468 0.96015 1.01555 0.99758 1.26042 1.06185 1.03688 0.98469 1.84333 1.25767 1.31912 1.22179 1.22744 0.79870 0.71926 0.87636 1.92984 1.74455 1.96081 1.55153 1.93371 1.69114 1.54799 1.96387 1.92950 1.81706 1.48455 1.97035 0.92423 0.82108 0.93835 0.90130 0.76793 0.90816 0.90933 0.89863 0.91267 0.83170 0.81939 0.79429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.02 9.50 21.45 0.20 -47.81 16 2 C 0.02 0.81 5.20 84.65 0.44 1.25 16 3 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -28.86 8.33 25.60 0.21 -28.65 16 8 H 0.08 3.84 7.62 -2.91 -0.02 3.82 16 9 C 0.19 9.38 2.26 44.17 0.10 9.48 16 10 H 0.02 1.22 7.80 -2.39 -0.02 1.20 16 11 N -0.68 -27.56 6.22 -495.43 -3.08 -30.64 16 12 C 0.02 0.78 5.10 86.30 0.44 1.22 16 13 C 0.13 3.49 3.52 30.60 0.11 3.59 16 14 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 15 O -0.56 -16.04 12.64 -144.32 -1.82 -17.87 16 16 C 0.04 0.81 5.57 71.98 0.40 1.21 16 17 O -0.39 -9.73 10.29 -144.32 -1.49 -11.22 16 18 C 0.13 2.43 6.43 71.24 0.46 2.88 16 19 C -0.20 -4.04 6.14 24.59 0.15 -3.89 16 20 C -0.13 -2.24 10.05 21.22 0.21 -2.03 16 21 C -0.15 -2.24 10.18 21.21 0.22 -2.03 16 22 C -0.21 -3.07 11.23 66.72 0.75 -2.32 16 23 S 0.09 1.71 23.33 -56.49 -1.32 0.39 16 24 C 0.43 21.88 2.81 71.98 0.20 22.08 16 25 F -0.20 -10.62 16.94 44.97 0.76 -9.86 16 26 F -0.16 -8.56 12.91 44.97 0.58 -7.98 16 27 F -0.22 -9.98 15.04 44.97 0.68 -9.31 16 28 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.36 14.11 7.61 -89.70 -0.68 13.43 16 30 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.08 2.70 6.03 -2.39 -0.01 2.69 16 32 H 0.38 7.98 9.04 -74.06 -0.67 7.31 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -63.57 353.89 -0.02 -63.59 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -0.24 Total: 24.05 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 3.69 Total: 2.80 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -2.88 Total: -78.46 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -3.31 Total: -29.08 kcal Atomic # 9 Polarization: -29.17 SS G_CDS: 2.02 Total: -27.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.32 Total: 0.39 kcal Total: -63.57 -0.02 -63.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650157467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.048 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds