Wall clock time and date at job start Tue Mar 31 2020 22:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47292 * 240.00131 * 3 2 1 5 5 H 1.48506 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46866 * 120.00208 * 3 2 1 7 7 C 1.37873 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00235 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46902 * 300.00409 * 9 7 2 11 11 N 1.46901 * 109.47331 * 180.02562 * 9 7 2 12 12 C 1.46898 * 111.00105 * 154.99746 * 11 9 7 13 13 C 1.52997 * 109.47377 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46881 * 59.99843 * 13 12 11 15 15 O 1.42904 * 109.47100 * 300.00760 * 13 12 11 16 16 C 1.52997 * 109.47504 * 180.02562 * 13 12 11 17 17 O 1.42898 * 109.47319 * 185.00258 * 16 13 12 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.47205 * 179.97438 * 18 17 16 20 20 C 1.33387 * 125.20527 * 89.99835 * 19 18 17 21 21 C 1.38426 * 114.92224 * 179.97438 * 20 19 18 22 22 C 1.33381 * 114.91916 * 359.97438 * 21 20 19 23 23 S 1.75881 * 109.59584 * 359.75814 * 22 21 20 24 24 C 1.52996 * 109.46909 * 60.00335 * 9 7 2 25 25 F 1.39902 * 109.46825 * 180.02562 * 24 9 7 26 26 F 1.39899 * 109.47143 * 299.99832 * 24 9 7 27 27 F 1.39895 * 109.47441 * 60.00262 * 24 9 7 28 28 H 0.97003 * 119.99849 * 359.97438 * 1 2 3 29 29 H 1.00895 * 111.00057 * 278.95619 * 11 9 7 30 30 H 1.09004 * 109.47243 * 59.99991 * 12 11 9 31 31 H 1.09002 * 109.47426 * 300.00139 * 12 11 9 32 32 H 0.96708 * 113.99258 * 299.99573 * 15 13 12 33 33 H 1.09002 * 109.47153 * 64.99951 * 16 13 12 34 34 H 1.09001 * 109.46832 * 305.00142 * 16 13 12 35 35 H 1.09001 * 109.46918 * 299.99649 * 18 17 16 36 36 H 1.08999 * 109.46857 * 59.99535 * 18 17 16 37 37 H 1.08003 * 122.53917 * 359.95700 * 20 19 18 38 38 H 1.07998 * 122.53581 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.19936 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 7 2.2056 -3.6157 -0.0005 12 6 1.6030 -4.8235 0.5791 13 6 2.6248 -5.9622 0.5613 14 1 3.4986 -5.6754 1.1464 15 8 3.0199 -6.2266 -0.7864 16 6 1.9970 -7.2203 1.1644 17 8 2.9847 -8.2490 1.2550 18 6 2.4991 -9.4740 1.8079 19 6 3.6182 -10.4822 1.8555 20 6 4.4572 -10.6520 2.8785 21 6 5.4075 -11.6417 2.6953 22 6 5.3400 -12.2758 1.5238 23 16 4.0124 -11.6207 0.5742 24 6 0.3710 -2.5799 -1.2495 25 9 -0.3289 -3.7913 -1.2492 26 9 -0.5381 -1.5166 -1.2489 27 9 1.1749 -2.5056 -2.3920 28 1 -0.4850 0.8401 0.0004 29 1 2.5521 -3.7952 -0.9310 30 1 0.7295 -5.1105 -0.0063 31 1 1.3013 -4.6217 1.6069 32 1 2.2911 -6.4880 -1.3657 33 1 1.1779 -7.5579 0.5293 34 1 1.6153 -6.9944 2.1601 35 1 2.1276 -9.2952 2.8169 36 1 1.6907 -9.8581 1.1858 37 1 4.3995 -10.0619 3.7812 38 1 6.1471 -11.8826 3.4446 39 1 5.9970 -13.0728 1.2086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650157502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:18 Heat of formation + Delta-G solvation = -194.987320 kcal Electronic energy + Delta-G solvation = -27197.240792 eV Core-core repulsion = 22624.646007 eV Total energy + Delta-G solvation = -4572.594785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.55763 -46.23544 -45.70244 -38.90865 -37.99512 -36.80995 -35.05776 -32.65910 -31.50851 -30.08760 -27.72374 -26.17072 -24.51600 -23.86067 -23.15263 -21.40842 -20.95487 -19.55581 -17.63400 -17.50976 -16.97791 -16.89119 -16.74349 -16.37339 -16.12679 -16.01168 -15.51528 -14.90360 -14.69820 -14.22166 -13.72511 -13.46009 -13.28112 -13.16470 -13.03169 -12.94391 -12.72694 -12.63427 -12.44890 -12.22184 -12.12325 -11.96460 -11.91737 -11.84367 -11.54097 -11.02541 -11.00168 -10.79509 -10.68556 -10.54751 -10.20865 -9.88537 -9.79442 -9.51220 -9.02167 -8.71172 -8.56811 -7.68281 -6.13648 -4.30581 0.66057 1.36295 1.74590 2.43135 3.27824 3.31526 3.35016 3.52310 4.27349 4.37177 4.45360 4.59328 4.77542 4.79725 4.90338 4.97815 5.02301 5.09970 5.23414 5.28218 5.31974 5.37023 5.42060 5.57502 5.75068 5.75734 5.83350 5.99281 6.01164 6.14616 6.19646 6.31292 6.73477 6.96514 7.52609 7.77272 7.81144 8.04842 8.12232 8.76189 9.34705 10.78896 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.002161 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.363201 B =12952.264080 C =13447.735964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.056 3.944 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.192 3.808 10 H 0.070 0.930 11 N -0.664 5.664 12 C 0.017 3.983 13 C 0.114 3.886 14 H 0.114 0.886 15 O -0.549 6.549 16 C 0.031 3.969 17 O -0.369 6.369 18 C 0.131 3.869 19 C -0.179 4.179 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.213 4.213 23 S 0.115 5.885 24 C 0.394 3.606 25 F -0.234 7.234 26 F -0.136 7.136 27 F -0.207 7.207 28 H 0.264 0.736 29 H 0.344 0.656 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.368 0.632 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -21.108 4.262 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.081 3.919 10 H 0.088 0.912 11 N -0.295 5.295 12 C -0.113 4.113 13 C 0.055 3.945 14 H 0.132 0.868 15 O -0.353 6.353 16 C -0.046 4.046 17 O -0.288 6.288 18 C 0.053 3.947 19 C -0.297 4.297 20 C -0.150 4.150 21 C -0.168 4.168 22 C -0.349 4.349 23 S 0.379 5.621 24 C 0.337 3.663 25 F -0.217 7.217 26 F -0.117 7.117 27 F -0.189 7.189 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.214 0.786 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.867 -20.927 3.574 21.579 hybrid contribution -0.704 0.626 0.305 0.990 sum 3.163 -20.301 3.879 20.909 Atomic orbital electron populations 1.70361 1.05841 1.27037 1.45643 1.25160 0.95146 1.00176 0.94594 0.86306 0.79295 0.81454 0.78964 1.19936 1.21203 1.19832 1.20799 0.94169 0.87502 1.52796 0.90301 1.20454 0.89707 0.91884 0.89856 0.91193 1.60529 1.36746 1.03910 1.28312 1.22750 0.95549 0.91444 1.01538 1.21981 0.98973 0.89989 0.83584 0.86846 1.86655 1.38111 1.90517 1.20035 1.23325 0.91369 0.89112 1.00840 1.88062 1.36134 1.20858 1.83762 1.20705 0.91949 0.83340 0.98684 1.24176 1.04188 1.03141 0.98159 1.20193 0.95242 0.99471 1.00129 1.20176 1.00958 0.97678 0.98024 1.25696 1.03743 1.06666 0.98777 1.84330 1.27543 1.30291 1.19913 1.24337 0.81167 0.72278 0.88545 1.92963 1.82117 1.49493 1.97094 1.93423 1.68540 1.53515 1.96250 1.92995 1.74280 1.96088 1.55498 0.92502 0.83669 0.94093 0.90170 0.78550 0.92921 0.92033 0.91350 0.92344 0.84089 0.84154 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.45 9.50 55.43 0.53 -22.93 16 2 C 0.06 1.48 5.20 -17.82 -0.09 1.38 16 3 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -13.63 8.58 -34.44 -0.30 -13.93 16 8 H 0.08 2.10 7.81 -52.48 -0.41 1.69 16 9 C 0.19 4.60 2.26 -68.87 -0.16 4.45 16 10 H 0.07 1.76 7.80 -51.92 -0.40 1.36 16 11 N -0.66 -13.57 6.23 -107.95 -0.67 -14.25 16 12 C 0.02 0.28 5.10 -3.83 -0.02 0.26 16 13 C 0.11 1.64 3.52 -26.73 -0.09 1.54 16 14 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 15 O -0.55 -8.36 12.64 -40.10 -0.51 -8.86 16 16 C 0.03 0.36 5.57 37.16 0.21 0.57 16 17 O -0.37 -4.76 10.29 -40.10 -0.41 -5.17 16 18 C 0.13 1.32 6.43 36.00 0.23 1.55 16 19 C -0.18 -1.86 6.14 -36.00 -0.22 -2.08 16 20 C -0.12 -1.13 10.05 -41.21 -0.41 -1.55 16 21 C -0.14 -1.16 10.18 -41.21 -0.42 -1.58 16 22 C -0.21 -1.75 11.23 29.04 0.33 -1.43 16 23 S 0.12 1.10 23.33 -107.50 -2.51 -1.41 16 24 C 0.39 9.54 2.74 37.16 0.10 9.64 16 25 F -0.23 -5.11 15.04 2.25 0.03 -5.08 16 26 F -0.14 -3.67 12.91 2.25 0.03 -3.64 16 27 F -0.21 -5.03 16.31 2.25 0.04 -4.99 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.34 7.10 7.28 -39.29 -0.29 6.82 16 30 H 0.04 0.67 6.03 -51.93 -0.31 0.36 16 31 H 0.08 1.26 8.05 -51.93 -0.42 0.85 16 32 H 0.37 4.46 9.05 45.56 0.41 4.87 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -29.92 353.31 -7.95 -37.87 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.94 Total: 8.46 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.85 Total: -1.17 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.15 Total: -37.17 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.92 Total: -14.04 kcal Atomic # 9 Polarization: -13.81 SS G_CDS: 0.10 Total: -13.71 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.51 Total: -1.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.92 -7.95 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650157502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.115 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds