Wall clock time and date at job start Tue Mar 31 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48498 * 109.47292 * 240.00131 * 3 2 1 5 5 H 1.48506 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46866 * 120.00208 * 3 2 1 7 7 C 1.37873 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00235 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46902 * 300.00409 * 9 7 2 11 11 N 1.46901 * 109.47331 * 180.02562 * 9 7 2 12 12 C 1.46898 * 111.00105 * 154.99746 * 11 9 7 13 13 C 1.52997 * 109.47377 * 179.97438 * 12 11 9 14 14 H 1.09004 * 109.46881 * 59.99843 * 13 12 11 15 15 O 1.42904 * 109.47100 * 300.00760 * 13 12 11 16 16 C 1.52997 * 109.47504 * 180.02562 * 13 12 11 17 17 O 1.42898 * 109.47319 * 185.00258 * 16 13 12 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 13 19 19 C 1.50697 * 109.47205 * 179.97438 * 18 17 16 20 20 C 1.33387 * 125.20527 * 89.99835 * 19 18 17 21 21 C 1.38426 * 114.92224 * 179.97438 * 20 19 18 22 22 C 1.33381 * 114.91916 * 359.97438 * 21 20 19 23 23 S 1.75881 * 109.59584 * 359.75814 * 22 21 20 24 24 C 1.52996 * 109.46909 * 60.00335 * 9 7 2 25 25 F 1.39902 * 109.46825 * 180.02562 * 24 9 7 26 26 F 1.39899 * 109.47143 * 299.99832 * 24 9 7 27 27 F 1.39895 * 109.47441 * 60.00262 * 24 9 7 28 28 H 0.97003 * 119.99849 * 359.97438 * 1 2 3 29 29 H 1.00895 * 111.00057 * 278.95619 * 11 9 7 30 30 H 1.09004 * 109.47243 * 59.99991 * 12 11 9 31 31 H 1.09002 * 109.47426 * 300.00139 * 12 11 9 32 32 H 0.96708 * 113.99258 * 299.99573 * 15 13 12 33 33 H 1.09002 * 109.47153 * 64.99951 * 16 13 12 34 34 H 1.09001 * 109.46832 * 305.00142 * 16 13 12 35 35 H 1.09001 * 109.46918 * 299.99649 * 18 17 16 36 36 H 1.08999 * 109.46857 * 59.99535 * 18 17 16 37 37 H 1.08003 * 122.53917 * 359.95700 * 20 19 18 38 38 H 1.07998 * 122.53581 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.19936 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 7 2.2056 -3.6157 -0.0005 12 6 1.6030 -4.8235 0.5791 13 6 2.6248 -5.9622 0.5613 14 1 3.4986 -5.6754 1.1464 15 8 3.0199 -6.2266 -0.7864 16 6 1.9970 -7.2203 1.1644 17 8 2.9847 -8.2490 1.2550 18 6 2.4991 -9.4740 1.8079 19 6 3.6182 -10.4822 1.8555 20 6 4.4572 -10.6520 2.8785 21 6 5.4075 -11.6417 2.6953 22 6 5.3400 -12.2758 1.5238 23 16 4.0124 -11.6207 0.5742 24 6 0.3710 -2.5799 -1.2495 25 9 -0.3289 -3.7913 -1.2492 26 9 -0.5381 -1.5166 -1.2489 27 9 1.1749 -2.5056 -2.3920 28 1 -0.4850 0.8401 0.0004 29 1 2.5521 -3.7952 -0.9310 30 1 0.7295 -5.1105 -0.0063 31 1 1.3013 -4.6217 1.6069 32 1 2.2911 -6.4880 -1.3657 33 1 1.1779 -7.5579 0.5293 34 1 1.6153 -6.9944 2.1601 35 1 2.1276 -9.2952 2.8169 36 1 1.6907 -9.8581 1.1858 37 1 4.3995 -10.0619 3.7812 38 1 6.1471 -11.8826 3.4446 39 1 5.9970 -13.0728 1.2086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650157502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:17 Heat of formation + Delta-G solvation = -215.723185 kcal Electronic energy + Delta-G solvation = -27198.139967 eV Core-core repulsion = 22624.646007 eV Total energy + Delta-G solvation = -4573.493960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.49388 -48.14110 -47.72312 -39.86556 -38.86443 -37.85258 -36.63684 -34.51378 -32.40120 -31.33066 -29.20466 -27.00880 -26.44162 -25.17148 -23.84648 -22.83010 -22.59793 -20.21587 -19.33054 -18.78039 -18.74260 -18.36737 -18.23796 -17.64967 -17.37903 -16.99750 -16.69493 -16.34694 -15.87733 -15.53939 -15.27630 -15.02371 -14.89607 -14.55221 -14.39639 -14.33267 -14.04278 -13.98872 -13.90609 -13.79098 -13.67530 -13.45941 -13.10376 -12.86306 -12.73189 -12.60773 -12.55516 -12.43109 -12.07149 -11.83445 -11.67928 -11.52730 -10.97204 -10.65612 -10.57799 -9.71546 -9.41349 -9.33669 -8.14828 -6.38061 -0.02404 0.68755 1.07952 1.46101 1.47717 1.55799 1.76123 2.37948 2.43410 2.59685 2.97244 3.33269 3.51606 3.75414 3.80102 3.82132 4.03759 4.08703 4.12851 4.18952 4.21735 4.26153 4.36696 4.45055 4.51172 4.65967 4.71184 4.72842 4.85434 5.12625 5.18358 5.34128 5.55383 5.62896 5.78253 6.11649 6.23226 6.46064 6.70469 6.80381 7.30786 8.76800 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.002161 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.363201 B =12952.264080 C =13447.735964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.012 3.988 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.198 3.802 10 H 0.056 0.944 11 N -0.668 5.668 12 C 0.020 3.980 13 C 0.123 3.877 14 H 0.098 0.902 15 O -0.567 6.567 16 C 0.038 3.962 17 O -0.393 6.393 18 C 0.129 3.871 19 C -0.203 4.203 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.208 4.208 23 S 0.091 5.909 24 C 0.395 3.605 25 F -0.219 7.219 26 F -0.153 7.153 27 F -0.208 7.208 28 H 0.265 0.735 29 H 0.342 0.658 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.381 0.619 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 -22.056 4.888 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.086 3.914 10 H 0.074 0.926 11 N -0.298 5.298 12 C -0.109 4.109 13 C 0.064 3.936 14 H 0.116 0.884 15 O -0.373 6.373 16 C -0.040 4.040 17 O -0.313 6.313 18 C 0.051 3.949 19 C -0.320 4.320 20 C -0.155 4.155 21 C -0.178 4.178 22 C -0.344 4.344 23 S 0.355 5.645 24 C 0.338 3.662 25 F -0.202 7.202 26 F -0.134 7.134 27 F -0.190 7.190 28 H 0.075 0.925 29 H 0.161 0.839 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.170 0.830 38 H 0.181 0.819 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.437 -21.903 4.203 22.740 hybrid contribution -0.854 0.811 0.117 1.184 sum 3.583 -21.092 4.320 21.826 Atomic orbital electron populations 1.70469 1.06908 1.27647 1.46271 1.25893 0.95918 1.03149 0.94190 0.85404 0.78189 0.77856 0.79014 1.19945 1.20727 1.19043 1.21043 0.94047 0.88933 1.53133 0.91055 1.20230 0.89675 0.92525 0.88959 0.92631 1.60468 1.36212 1.04881 1.28252 1.22808 0.96131 0.90507 1.01494 1.21798 0.97788 0.90655 0.83397 0.88367 1.86617 1.39315 1.90626 1.20721 1.23200 0.91092 0.87804 1.01872 1.88010 1.37102 1.21922 1.84311 1.20860 0.92137 0.82229 0.99645 1.24351 1.05106 1.03855 0.98702 1.20500 0.95077 0.99640 1.00310 1.20476 1.01245 0.97358 0.98680 1.26037 1.03167 1.06876 0.98308 1.84365 1.28747 1.30788 1.20648 1.24245 0.81008 0.72348 0.88628 1.92980 1.81792 1.48332 1.97047 1.93385 1.69094 1.54611 1.96339 1.92987 1.74309 1.96128 1.55560 0.92544 0.83870 0.93684 0.89550 0.77068 0.91372 0.90308 0.89667 0.91454 0.83023 0.81887 0.79466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.26 9.50 21.45 0.20 -48.06 16 2 C 0.01 0.65 5.20 84.65 0.44 1.09 16 3 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.53 -28.29 8.58 25.60 0.22 -28.07 16 8 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 9 C 0.20 9.48 2.26 44.17 0.10 9.58 16 10 H 0.06 2.82 7.80 -2.38 -0.02 2.80 16 11 N -0.67 -27.04 6.23 -495.45 -3.09 -30.12 16 12 C 0.02 0.64 5.10 86.30 0.44 1.08 16 13 C 0.12 3.39 3.52 30.59 0.11 3.50 16 14 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 15 O -0.57 -16.73 12.64 -144.32 -1.82 -18.56 16 16 C 0.04 0.80 5.57 71.98 0.40 1.21 16 17 O -0.39 -9.64 10.29 -144.32 -1.49 -11.12 16 18 C 0.13 2.40 6.43 71.24 0.46 2.86 16 19 C -0.20 -4.01 6.14 24.59 0.15 -3.86 16 20 C -0.12 -2.18 10.05 21.22 0.21 -1.97 16 21 C -0.15 -2.21 10.18 21.22 0.22 -1.99 16 22 C -0.21 -3.07 11.23 66.72 0.75 -2.32 16 23 S 0.09 1.66 23.33 -56.49 -1.32 0.34 16 24 C 0.39 19.02 2.74 71.98 0.20 19.22 16 25 F -0.22 -9.35 15.04 44.97 0.68 -8.68 16 26 F -0.15 -8.26 12.91 44.97 0.58 -7.68 16 27 F -0.21 -10.04 16.31 44.97 0.73 -9.31 16 28 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.34 14.00 7.28 -89.70 -0.65 13.35 16 30 H 0.05 1.40 6.03 -2.39 -0.01 1.39 16 31 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 32 H 0.38 8.77 9.05 -74.05 -0.67 8.10 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -62.82 353.31 -0.01 -62.83 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.21 Total: 25.52 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 3.69 Total: 0.32 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -2.88 Total: -78.18 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -3.31 Total: -29.68 kcal Atomic # 9 Polarization: -27.65 SS G_CDS: 1.99 Total: -25.66 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.34 kcal Total: -62.82 -0.01 -62.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650157502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.892 kcal (2) G-P(sol) polarization free energy of solvation -62.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds