Wall clock time and date at job start Tue Mar 31 2020 21:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00532 * 2 1 4 4 H 1.48507 * 109.47215 * 269.99595 * 3 2 1 5 5 H 1.48490 * 109.47453 * 29.99527 * 3 2 1 6 6 H 1.48502 * 109.47271 * 150.00013 * 3 2 1 7 7 C 1.37884 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00218 * 172.36545 * 7 2 1 9 9 C 1.50706 * 119.99859 * 352.37244 * 7 2 1 10 10 C 1.52996 * 115.54886 * 84.74645 * 9 7 2 11 11 S 1.81404 * 109.47272 * 65.40406 * 10 9 7 12 12 O 1.42093 * 110.54543 * 64.08629 * 11 10 9 13 13 O 1.42106 * 110.53909 * 287.33993 * 11 10 9 14 14 O 1.52202 * 104.45072 * 175.71913 * 11 10 9 15 15 C 1.35896 * 114.00374 * 74.99466 * 14 11 10 16 16 C 1.38754 * 120.05991 * 269.72546 * 15 14 11 17 17 C 1.38118 * 119.94430 * 180.25244 * 16 15 14 18 18 C 1.38281 * 120.05910 * 0.04598 * 17 16 15 19 19 C 1.38238 * 120.10999 * 359.95495 * 18 17 16 20 20 C 1.38168 * 120.06068 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.03241 * 179.97438 * 20 19 18 22 22 C 1.50694 * 109.47217 * 265.02730 * 21 20 19 23 23 N 1.34779 * 119.99874 * 180.02562 * 22 21 20 24 24 O 1.21282 * 120.00182 * 359.97438 * 22 21 20 25 25 C 1.52999 * 117.49850 * 230.41489 * 9 7 2 26 26 C 1.52993 * 117.49711 * 299.07615 * 9 7 2 27 27 H 0.97005 * 119.99589 * 5.03933 * 1 2 3 28 28 H 1.09005 * 109.47425 * 305.39939 * 10 9 7 29 29 H 1.09003 * 109.47195 * 185.40248 * 10 9 7 30 30 H 1.08008 * 120.02510 * 0.25693 * 16 15 14 31 31 H 1.08003 * 119.96945 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.94706 * 179.97438 * 18 17 16 33 33 H 1.08005 * 119.97290 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47148 * 25.02576 * 21 20 19 35 35 H 1.09005 * 109.47050 * 145.02396 * 21 20 19 36 36 H 0.96993 * 120.00332 * 359.97438 * 23 22 21 37 37 H 0.97004 * 119.99536 * 179.97438 * 23 22 21 38 38 H 1.08998 * 117.49854 * 214.99937 * 25 9 7 39 39 H 1.09000 * 117.49607 * 0.02562 * 25 9 7 40 40 H 1.09001 * 117.50408 * 359.97438 * 26 9 7 41 41 H 1.09003 * 117.49576 * 144.97467 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0772 -1.1984 -0.1237 9 6 1.2608 -2.4934 0.1744 10 6 0.6683 -3.0906 -1.1035 11 16 2.0103 -3.5666 -2.2274 12 8 2.7989 -4.5996 -1.6530 13 8 2.6153 -2.4142 -2.7978 14 8 1.3057 -4.2385 -3.3973 15 6 0.6770 -3.3727 -4.2351 16 6 -0.6478 -3.0266 -4.0106 17 6 -1.2861 -2.1505 -4.8666 18 6 -0.6063 -1.6191 -5.9471 19 6 0.7136 -1.9623 -6.1730 20 6 1.3569 -2.8380 -5.3195 21 6 2.7956 -3.2121 -5.5666 22 6 2.8527 -4.4984 -6.3497 23 7 4.0446 -5.0289 -6.6881 24 8 1.8262 -5.0566 -6.6748 25 6 1.7781 -3.4669 1.2353 26 6 0.4800 -2.6918 1.4750 27 1 -0.4850 0.8369 -0.0738 28 1 0.0325 -2.3505 -1.5897 29 1 0.0753 -3.9701 -0.8526 30 1 -1.1795 -3.4420 -3.1671 31 1 -2.3171 -1.8805 -4.6920 32 1 -1.1072 -0.9345 -6.6155 33 1 1.2426 -1.5456 -7.0174 34 1 3.2849 -2.4198 -6.1332 35 1 3.3056 -3.3447 -4.6124 36 1 4.8655 -4.5827 -6.4278 37 1 4.0813 -5.8571 -7.1918 38 1 1.6961 -4.5329 1.0229 39 1 2.6559 -3.1675 1.8078 40 1 0.5045 -1.8829 2.2052 41 1 -0.4561 -3.2476 1.4202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654551961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:50 Heat of formation + Delta-G solvation = -92.436153 kcal Electronic energy + Delta-G solvation = -28718.826627 eV Core-core repulsion = 24692.535534 eV Total energy + Delta-G solvation = -4026.291093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03305 -39.24105 -37.78485 -36.79693 -36.44588 -35.36979 -33.72880 -32.76646 -32.07318 -30.32878 -28.31759 -27.67916 -25.51829 -23.26389 -22.51049 -21.25436 -20.69831 -20.18295 -19.33141 -17.93119 -17.56046 -17.12941 -17.03504 -16.65793 -16.07630 -15.72509 -15.16992 -14.83210 -14.68094 -14.58427 -14.05571 -13.92467 -13.80615 -13.19083 -13.13528 -12.83283 -12.60950 -12.22100 -12.08547 -11.89650 -11.75282 -11.57080 -11.36188 -11.29813 -11.06169 -10.97267 -10.90552 -10.63557 -10.49590 -10.15739 -10.03649 -9.76276 -9.74217 -9.00172 -8.85564 -8.64958 -8.59381 -8.14440 -6.16803 -4.27335 0.63479 1.32953 1.46245 2.61737 2.81427 3.27879 3.33519 3.38305 3.40762 3.79289 4.28686 4.34418 4.53346 4.65394 4.72569 4.98867 5.02425 5.09876 5.12416 5.19407 5.21749 5.41530 5.49036 5.55899 5.64976 5.87415 5.95705 6.17835 6.22599 6.30305 6.32657 6.42366 6.45713 6.55594 6.68897 6.69188 6.94008 6.96290 7.18316 7.22866 7.35819 7.77521 8.16355 8.20996 8.77883 9.43714 10.90989 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.004996 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.358245 B = 5602.993172 C = 6181.219648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.084 3.916 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.069 0.931 9 C 0.044 3.956 10 C -0.575 4.575 11 S 2.582 3.418 12 O -0.947 6.947 13 O -0.942 6.942 14 O -0.680 6.680 15 C 0.096 3.904 16 C -0.122 4.122 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.095 4.095 20 C -0.041 4.041 21 C -0.113 4.113 22 C 0.520 3.480 23 N -0.858 5.858 24 O -0.531 6.531 25 C -0.211 4.211 26 C -0.139 4.139 27 H 0.263 0.737 28 H 0.139 0.861 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.403 0.597 37 H 0.401 0.599 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -4.199 -12.323 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.122 4.122 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.042 3.958 10 C -0.706 4.706 11 S 2.683 3.317 12 O -0.945 6.945 13 O -0.941 6.941 14 O -0.638 6.638 15 C 0.054 3.946 16 C -0.142 4.142 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.044 4.044 21 C -0.153 4.153 22 C 0.305 3.695 23 N -0.423 5.423 24 O -0.407 6.407 25 C -0.248 4.248 26 C -0.178 4.178 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.121 0.879 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.231 0.769 37 H 0.232 0.768 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.852 -4.629 -12.691 13.535 hybrid contribution 0.288 0.793 0.502 0.982 sum 1.140 -3.837 -12.189 12.829 Atomic orbital electron populations 1.69974 1.06040 1.27199 1.47620 1.24938 0.94787 0.99169 0.93277 0.86585 0.80144 0.82842 0.78639 1.20038 1.21089 1.19442 1.20495 0.93644 0.88425 1.52643 0.91267 1.18249 0.99161 0.94423 0.83994 1.30229 1.16842 1.09061 1.14513 1.05810 0.77269 0.73793 0.74871 1.93539 1.66303 1.57203 1.77431 1.93564 1.74910 1.52248 1.73343 1.85749 1.74474 1.53095 1.50513 1.17765 0.91930 0.92480 0.92418 1.21338 0.92647 0.98875 1.01377 1.20996 1.00434 0.96038 0.94206 1.21223 0.94369 0.99391 0.97600 1.20860 0.94952 0.97021 0.98488 1.19240 0.94614 0.96496 0.94053 1.20772 0.95370 0.96195 1.02926 1.20544 0.83564 0.86418 0.79016 1.43835 1.08461 1.29457 1.60522 1.90752 1.33623 1.62342 1.53971 1.23240 0.98870 0.96111 1.06583 1.22557 0.92551 1.00996 1.01700 0.92707 0.84247 0.87863 0.84177 0.84574 0.85044 0.84953 0.86713 0.87109 0.76894 0.76843 0.90614 0.89342 0.89438 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.42 12.98 55.43 0.72 -22.70 16 2 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 3 Si 0.89 20.85 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.78 8.11 -34.44 -0.28 -14.06 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C 0.04 1.06 1.32 -155.66 -0.21 0.86 16 10 C -0.58 -12.41 5.19 37.16 0.19 -12.22 16 11 S 2.58 55.39 4.57 -107.50 -0.49 54.90 16 12 O -0.95 -21.99 18.09 -67.04 -1.21 -23.20 16 13 O -0.94 -21.30 13.97 -67.04 -0.94 -22.24 16 14 O -0.68 -13.31 9.40 -51.74 -0.49 -13.80 16 15 C 0.10 1.75 4.78 -39.21 -0.19 1.56 16 16 C -0.12 -1.96 8.53 -39.43 -0.34 -2.30 16 17 C -0.10 -1.33 10.04 -39.61 -0.40 -1.73 16 18 C -0.11 -1.34 10.04 -39.57 -0.40 -1.74 16 19 C -0.10 -1.30 9.68 -39.61 -0.38 -1.68 16 20 C -0.04 -0.69 3.80 -104.47 -0.40 -1.08 16 21 C -0.11 -1.65 5.29 -29.04 -0.15 -1.80 16 22 C 0.52 7.47 8.09 -10.99 -0.09 7.38 16 23 N -0.86 -8.22 8.87 31.22 0.28 -7.94 16 24 O -0.53 -9.64 16.87 5.56 0.09 -9.55 16 25 C -0.21 -4.64 9.96 -26.69 -0.27 -4.90 16 26 C -0.14 -3.14 9.49 -26.70 -0.25 -3.40 16 27 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 28 H 0.14 3.05 6.93 -51.92 -0.36 2.69 16 29 H 0.10 1.91 8.09 -51.92 -0.42 1.49 16 30 H 0.14 1.99 7.59 -52.48 -0.40 1.59 16 31 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.11 1.22 8.05 -51.93 -0.42 0.81 16 35 H 0.11 1.77 5.52 -51.93 -0.29 1.49 16 36 H 0.40 2.64 8.83 -40.82 -0.36 2.28 16 37 H 0.40 3.23 8.93 -40.82 -0.36 2.86 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 40 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -35.31 362.15 -9.96 -45.27 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.11 Total: 10.96 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -3.25 Total: -32.98 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 1.00 Total: -30.64 kcal Atomic # 8 Polarization: -66.24 SS G_CDS: -2.54 Total: -68.79 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 55.39 SS G_CDS: -0.49 Total: 54.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.31 -9.96 -45.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654551961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.167 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds