Wall clock time and date at job start Tue Mar 31 2020 22:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48491 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47316 * 299.99943 * 3 2 1 6 6 H 1.48504 * 109.46849 * 59.99899 * 3 2 1 7 7 C 1.38799 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99529 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00137 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47143 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00109 * 354.88053 * 11 10 9 13 13 N 1.34782 * 119.99896 * 174.87458 * 11 10 9 14 14 C 1.48035 * 126.92654 * 4.92619 * 13 11 10 15 15 C 1.56021 * 105.10937 * 182.00786 * 14 13 11 16 16 H 1.09003 * 116.90449 * 159.16813 * 15 14 13 17 17 C 1.57085 * 99.60151 * 32.74893 * 15 14 13 18 18 C 1.49275 * 126.92424 * 185.00938 * 13 11 10 19 19 H 1.08998 * 116.76162 * 16.45143 * 18 13 11 20 20 C 1.56014 * 104.12975 * 246.87156 * 18 13 11 21 21 N 1.48285 * 105.07258 * 288.80162 * 20 18 13 22 22 C 1.46895 * 111.00231 * 122.54005 * 21 20 18 23 23 C 1.50698 * 109.47331 * 188.78152 * 22 21 20 24 24 C 1.35144 * 127.24879 * 95.76648 * 23 22 21 25 25 C 1.37803 * 114.75824 * 179.86817 * 24 23 22 26 26 N 1.30080 * 116.88611 * 0.44127 * 25 24 23 27 27 S 1.69603 * 107.14713 * 359.76681 * 26 25 24 28 28 H 0.97002 * 119.99969 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47447 * 59.99026 * 10 9 7 30 30 H 1.09001 * 109.46662 * 299.99750 * 10 9 7 31 31 H 1.09002 * 110.35942 * 63.07758 * 14 13 11 32 32 H 1.08991 * 110.35270 * 300.93412 * 14 13 11 33 33 H 1.08994 * 112.36267 * 191.74763 * 17 15 14 34 34 H 1.08998 * 112.35804 * 64.41843 * 17 15 14 35 35 H 1.09005 * 110.31775 * 47.69955 * 20 18 13 36 36 H 1.08998 * 110.32303 * 169.80020 * 20 18 13 37 37 H 1.09008 * 109.47269 * 308.78444 * 22 21 20 38 38 H 1.09000 * 109.47104 * 68.77772 * 22 21 20 39 39 H 1.07998 * 122.61645 * 0.04077 * 24 23 22 40 40 H 1.08004 * 121.55687 * 180.20902 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7951 -5.5037 0.0953 13 7 2.8398 -6.3415 -0.1030 14 6 4.3188 -6.2798 -0.1237 15 6 4.7848 -7.7569 -0.3117 16 1 5.7925 -7.9108 -0.6978 17 6 3.6043 -8.2933 -1.1984 18 6 2.4828 -7.7860 -0.2225 19 1 1.4548 -8.0160 -0.5022 20 6 2.9915 -8.4156 1.1113 21 7 4.4703 -8.4069 1.0025 22 6 5.0758 -7.6639 2.1156 23 6 6.5510 -7.4910 1.8608 24 6 7.1657 -6.4223 1.3074 25 6 8.5346 -6.5369 1.1975 26 7 9.0683 -7.6442 1.6230 27 16 7.8063 -8.6157 2.2062 28 1 -0.4850 0.8401 -0.0004 29 1 3.1246 -3.7313 0.8904 30 1 3.1244 -3.7313 -0.8895 31 1 4.6949 -5.8813 0.8186 32 1 4.6609 -5.6661 -0.9569 33 1 3.6144 -9.3794 -1.2895 34 1 3.5603 -7.8031 -2.1709 35 1 2.6709 -7.8127 1.9609 36 1 2.6238 -9.4367 1.2123 37 1 4.6041 -6.6846 2.1981 38 1 4.9297 -8.2167 3.0436 39 1 6.6266 -5.5458 0.9795 40 1 9.1359 -5.7458 0.7742 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713928211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:09 Heat of formation + Delta-G solvation = 59.180291 kcal Electronic energy + Delta-G solvation = -24702.116642 eV Core-core repulsion = 21157.445754 eV Total energy + Delta-G solvation = -3544.670888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51760 -39.06574 -38.22797 -34.74615 -32.68696 -32.48103 -30.54498 -29.95625 -28.72539 -26.76333 -25.56820 -24.98626 -23.86071 -21.65751 -20.79604 -20.29853 -18.83844 -18.07360 -17.83355 -16.95296 -16.70688 -16.03330 -15.67373 -15.38797 -14.85654 -14.68809 -14.41067 -14.20914 -13.79599 -13.70741 -13.47341 -13.16877 -12.88510 -12.65168 -12.56020 -12.35454 -12.13574 -11.89568 -11.74020 -11.52176 -11.42264 -11.25902 -11.11372 -11.07216 -10.80356 -10.72486 -9.90769 -9.86445 -9.55740 -9.12588 -9.01656 -8.89284 -8.47309 -8.30046 -6.56790 -6.27126 -3.98378 0.35866 1.20258 1.61715 2.15407 2.71295 2.93084 3.17586 3.20496 3.26746 3.44304 3.50833 4.00124 4.03555 4.14668 4.22320 4.48552 4.64215 4.68156 4.77447 4.89660 4.91195 5.07856 5.08747 5.10354 5.19766 5.35852 5.42616 5.45983 5.51740 5.54327 5.56331 5.58256 5.64447 5.70256 5.80559 6.03804 6.16845 6.25169 6.31834 6.48761 7.53930 7.56446 8.29745 8.43832 9.18310 10.80337 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003086 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.728296 B = 9070.618400 C =10716.471750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.551 3.449 12 O -0.512 6.512 13 N -0.629 5.629 14 C 0.065 3.935 15 C 0.054 3.946 16 H 0.131 0.869 17 C -0.135 4.135 18 C 0.115 3.885 19 H 0.129 0.871 20 C 0.026 3.974 21 N -0.508 5.508 22 C 0.111 3.889 23 C -0.159 4.159 24 C -0.207 4.207 25 C 0.092 3.908 26 N -0.466 5.466 27 S 0.273 5.727 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.157 0.843 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.813 -18.993 1.532 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.340 3.660 12 O -0.386 6.386 13 N -0.368 5.368 14 C -0.059 4.059 15 C -0.054 4.054 16 H 0.149 0.851 17 C -0.173 4.173 18 C 0.011 3.989 19 H 0.147 0.853 20 C -0.102 4.102 21 N -0.232 5.232 22 C -0.019 4.019 23 C -0.290 4.290 24 C -0.243 4.243 25 C -0.105 4.105 26 N -0.287 5.287 27 S 0.425 5.575 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.174 0.826 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 14.232 -21.345 2.282 25.756 hybrid contribution 0.907 3.964 -0.593 4.109 sum 15.139 -17.381 1.690 23.111 Atomic orbital electron populations 1.70028 1.05954 1.27416 1.46795 1.24997 0.95036 0.99052 0.94470 0.86113 0.79560 0.81839 0.77971 1.19619 1.20504 1.20512 1.22880 0.94878 0.91547 1.59044 0.90924 1.85412 1.04804 0.96386 1.96701 1.23501 1.06523 0.95073 1.04586 1.20047 0.85616 0.85347 0.74959 1.90715 1.15084 1.84971 1.47824 1.49365 1.06114 1.06043 1.75285 1.23277 0.81222 0.98777 1.02663 1.24684 0.99747 0.90610 0.90352 0.85146 1.23970 0.93481 1.01922 0.97924 1.23937 1.00066 0.80282 0.94638 0.85301 1.23739 0.86658 1.01819 0.98021 1.65216 1.08632 1.48373 1.01023 1.20815 0.86217 0.99149 0.95687 1.25304 1.01608 0.99107 1.02970 1.21479 0.94440 1.01716 1.06661 1.22821 0.93627 0.96086 0.97974 1.76799 1.23694 1.08128 1.20037 1.84123 0.92281 1.23556 1.57531 0.92180 0.89529 0.89500 0.90432 0.90718 0.88670 0.89509 0.91415 0.88800 0.91261 0.88623 0.82592 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 10 C -0.15 -2.91 5.45 36.00 0.20 -2.72 16 11 C 0.55 10.17 7.90 -10.98 -0.09 10.08 16 12 O -0.51 -11.43 16.26 5.56 0.09 -11.34 16 13 N -0.63 -8.35 2.95 -156.67 -0.46 -8.82 16 14 C 0.06 0.65 4.90 -1.58 -0.01 0.64 16 15 C 0.05 0.43 4.13 -62.17 -0.26 0.18 16 16 H 0.13 0.96 7.84 -51.93 -0.41 0.55 16 17 C -0.13 -1.10 6.80 -22.30 -0.15 -1.25 16 18 C 0.11 1.22 5.22 -62.56 -0.33 0.89 16 19 H 0.13 1.45 8.10 -51.93 -0.42 1.03 16 20 C 0.03 0.24 6.26 -1.45 -0.01 0.23 16 21 N -0.51 -4.23 5.39 -217.98 -1.17 -5.41 16 22 C 0.11 0.90 4.88 -4.98 -0.02 0.88 16 23 C -0.16 -1.29 5.06 -35.41 -0.18 -1.47 16 24 C -0.21 -1.60 8.92 -40.84 -0.36 -1.96 16 25 C 0.09 0.74 11.27 -18.45 -0.21 0.53 16 26 N -0.47 -4.67 12.09 28.86 0.35 -4.32 16 27 S 0.27 2.38 23.72 -107.50 -2.55 -0.17 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.08 0.75 3.81 -51.93 -0.20 0.56 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.64 5.85 -51.92 -0.30 0.33 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.16 1.07 6.60 -52.49 -0.35 0.73 16 40 H 0.18 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -34.13 351.78 -11.16 -45.29 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.99 Total: -0.98 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.22 Total: -6.72 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.55 Total: -43.65 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -4.76 Total: -3.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.13 -11.16 -45.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713928211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.471 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds