Wall clock time and date at job start Tue Mar 31 2020 22:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48491 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47316 * 299.99943 * 3 2 1 6 6 H 1.48504 * 109.46849 * 59.99899 * 3 2 1 7 7 C 1.38799 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99529 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00321 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00137 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47143 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00109 * 354.88053 * 11 10 9 13 13 N 1.34782 * 119.99896 * 174.87458 * 11 10 9 14 14 C 1.48035 * 126.92654 * 4.92619 * 13 11 10 15 15 C 1.56021 * 105.10937 * 182.00786 * 14 13 11 16 16 H 1.09003 * 116.90449 * 159.16813 * 15 14 13 17 17 C 1.57085 * 99.60151 * 32.74893 * 15 14 13 18 18 C 1.49275 * 126.92424 * 185.00938 * 13 11 10 19 19 H 1.08998 * 116.76162 * 16.45143 * 18 13 11 20 20 C 1.56014 * 104.12975 * 246.87156 * 18 13 11 21 21 N 1.48285 * 105.07258 * 288.80162 * 20 18 13 22 22 C 1.46895 * 111.00231 * 122.54005 * 21 20 18 23 23 C 1.50698 * 109.47331 * 188.78152 * 22 21 20 24 24 C 1.35144 * 127.24879 * 95.76648 * 23 22 21 25 25 C 1.37803 * 114.75824 * 179.86817 * 24 23 22 26 26 N 1.30080 * 116.88611 * 0.44127 * 25 24 23 27 27 S 1.69603 * 107.14713 * 359.76681 * 26 25 24 28 28 H 0.97002 * 119.99969 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47447 * 59.99026 * 10 9 7 30 30 H 1.09001 * 109.46662 * 299.99750 * 10 9 7 31 31 H 1.09002 * 110.35942 * 63.07758 * 14 13 11 32 32 H 1.08991 * 110.35270 * 300.93412 * 14 13 11 33 33 H 1.08994 * 112.36267 * 191.74763 * 17 15 14 34 34 H 1.08998 * 112.35804 * 64.41843 * 17 15 14 35 35 H 1.09005 * 110.31775 * 47.69955 * 20 18 13 36 36 H 1.08998 * 110.32303 * 169.80020 * 20 18 13 37 37 H 1.09008 * 109.47269 * 308.78444 * 22 21 20 38 38 H 1.09000 * 109.47104 * 68.77772 * 22 21 20 39 39 H 1.07998 * 122.61645 * 0.04077 * 24 23 22 40 40 H 1.08004 * 121.55687 * 180.20902 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7951 -5.5037 0.0953 13 7 2.8398 -6.3415 -0.1030 14 6 4.3188 -6.2798 -0.1237 15 6 4.7848 -7.7569 -0.3117 16 1 5.7925 -7.9108 -0.6978 17 6 3.6043 -8.2933 -1.1984 18 6 2.4828 -7.7860 -0.2225 19 1 1.4548 -8.0160 -0.5022 20 6 2.9915 -8.4156 1.1113 21 7 4.4703 -8.4069 1.0025 22 6 5.0758 -7.6639 2.1156 23 6 6.5510 -7.4910 1.8608 24 6 7.1657 -6.4223 1.3074 25 6 8.5346 -6.5369 1.1975 26 7 9.0683 -7.6442 1.6230 27 16 7.8063 -8.6157 2.2062 28 1 -0.4850 0.8401 -0.0004 29 1 3.1246 -3.7313 0.8904 30 1 3.1244 -3.7313 -0.8895 31 1 4.6949 -5.8813 0.8186 32 1 4.6609 -5.6661 -0.9569 33 1 3.6144 -9.3794 -1.2895 34 1 3.5603 -7.8031 -2.1709 35 1 2.6709 -7.8127 1.9609 36 1 2.6238 -9.4367 1.2123 37 1 4.6041 -6.6846 2.1981 38 1 4.9297 -8.2167 3.0436 39 1 6.6266 -5.5458 0.9795 40 1 9.1359 -5.7458 0.7742 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713928211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:09 Heat of formation + Delta-G solvation = 35.457163 kcal Electronic energy + Delta-G solvation = -24703.145354 eV Core-core repulsion = 21157.445754 eV Total energy + Delta-G solvation = -3545.699600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.38175 -39.93339 -39.37858 -35.63649 -34.60797 -33.63814 -31.47597 -30.80135 -29.99454 -27.70173 -27.43690 -25.90475 -24.50874 -22.62759 -21.61693 -20.98713 -20.13226 -19.39307 -18.75702 -18.29382 -17.54665 -16.94291 -16.89703 -16.51407 -16.48117 -15.99479 -15.79642 -15.05648 -14.89454 -14.65395 -14.43400 -14.22833 -13.93742 -13.80517 -13.61575 -13.28885 -13.18248 -13.11361 -12.93463 -12.76515 -12.62296 -12.45413 -12.31770 -12.13642 -11.93672 -11.72874 -11.35758 -11.17979 -11.04590 -10.56862 -10.31490 -9.85286 -9.64039 -9.35223 -8.70714 -8.37090 -6.15873 -0.27065 0.56812 0.99086 1.19301 1.40184 1.41878 1.51431 1.55031 1.55860 1.96126 2.24706 2.74664 2.97418 3.15751 3.30511 3.34614 3.46473 3.73938 3.75977 3.92314 4.03427 4.09220 4.18853 4.29153 4.31834 4.39834 4.42400 4.52032 4.62903 4.71087 4.81914 4.83530 4.87010 4.96030 4.98896 5.00872 5.21417 5.39535 5.56325 5.68849 5.77234 6.17494 6.33948 7.04281 7.05400 8.72367 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003086 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.728296 B = 9070.618400 C =10716.471750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.119 4.119 11 C 0.550 3.450 12 O -0.563 6.563 13 N -0.619 5.619 14 C 0.057 3.943 15 C 0.066 3.934 16 H 0.149 0.851 17 C -0.121 4.121 18 C 0.100 3.900 19 H 0.118 0.882 20 C 0.034 3.966 21 N -0.503 5.503 22 C 0.113 3.887 23 C -0.158 4.158 24 C -0.206 4.206 25 C 0.095 3.905 26 N -0.496 5.496 27 S 0.266 5.734 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.167 0.833 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.591 -19.407 1.149 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.270 4.270 11 C 0.339 3.661 12 O -0.442 6.442 13 N -0.355 5.355 14 C -0.066 4.066 15 C -0.042 4.042 16 H 0.166 0.834 17 C -0.159 4.159 18 C -0.003 4.003 19 H 0.136 0.864 20 C -0.094 4.094 21 N -0.227 5.227 22 C -0.016 4.016 23 C -0.288 4.288 24 C -0.242 4.242 25 C -0.102 4.102 26 N -0.317 5.317 27 S 0.418 5.582 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.185 0.815 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 17.068 -21.814 1.898 27.763 hybrid contribution 0.106 3.961 -0.466 3.990 sum 17.174 -17.853 1.432 24.814 Atomic orbital electron populations 1.70190 1.07983 1.28594 1.47965 1.26128 0.95960 1.03306 0.93679 0.84909 0.78661 0.76304 0.78108 1.17919 1.19888 1.19962 1.23203 0.95281 0.91855 1.58923 0.89948 1.85592 1.10344 0.99238 1.97012 1.23286 1.03433 0.94296 1.06003 1.19724 0.85388 0.85783 0.75245 1.90693 1.17172 1.85592 1.50700 1.49270 1.07319 1.06177 1.72756 1.23579 0.78813 1.00733 1.03501 1.24751 1.00430 0.88807 0.90166 0.83394 1.23947 0.91750 1.03083 0.97167 1.24216 1.00739 0.78501 0.96854 0.86386 1.23686 0.87107 1.02369 0.96279 1.65280 1.07893 1.48276 1.01263 1.20794 0.86164 0.98733 0.95957 1.25290 1.01303 0.99205 1.03041 1.21621 0.94437 1.01821 1.06277 1.23222 0.94004 0.96003 0.96927 1.76806 1.24550 1.09129 1.21251 1.84120 0.92372 1.23751 1.57921 0.91959 0.88023 0.87817 0.89784 0.89714 0.86616 0.89441 0.93016 0.86883 0.92171 0.87936 0.81527 0.77658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.71 9.50 67.95 0.65 -30.07 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.22 20.58 -56.49 -1.16 -9.38 16 10 C -0.12 -4.71 5.45 71.23 0.39 -4.32 16 11 C 0.55 20.38 7.90 87.65 0.69 21.07 16 12 O -0.56 -26.06 16.26 -3.02 -0.05 -26.11 16 13 N -0.62 -15.72 2.95 -767.97 -2.27 -17.98 16 14 C 0.06 0.98 4.90 87.13 0.43 1.41 16 15 C 0.07 0.85 4.13 46.80 0.19 1.05 16 16 H 0.15 1.55 7.84 -2.39 -0.02 1.54 16 17 C -0.12 -1.63 6.80 33.46 0.23 -1.40 16 18 C 0.10 1.98 5.22 46.93 0.24 2.23 16 19 H 0.12 2.63 8.10 -2.39 -0.02 2.61 16 20 C 0.03 0.56 6.26 87.08 0.55 1.10 16 21 N -0.50 -7.03 5.39 -843.54 -4.54 -11.57 16 22 C 0.11 1.59 4.88 85.56 0.42 2.01 16 23 C -0.16 -2.18 5.06 24.97 0.13 -2.06 16 24 C -0.21 -2.61 8.92 21.45 0.19 -2.42 16 25 C 0.10 1.28 11.27 84.85 0.96 2.24 16 26 N -0.50 -9.04 12.09 -62.62 -0.76 -9.80 16 27 S 0.27 4.17 23.72 -56.49 -1.34 2.83 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 30 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.08 1.41 3.81 -2.39 -0.01 1.40 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.03 7.56 -2.38 -0.02 1.02 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 0.99 5.85 -2.38 -0.01 0.97 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.17 1.74 6.60 -2.91 -0.02 1.72 16 40 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -76.42 351.78 -1.21 -77.63 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.07 Total: 12.50 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.52 Total: -7.89 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -7.28 Total: -94.54 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.50 Total: -6.55 kcal Total: -76.42 -1.21 -77.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713928211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.091 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds