Wall clock time and date at job start Tue Mar 31 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86808 * 119.99815 * 2 1 4 4 H 1.48496 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47122 * 300.00238 * 3 2 1 6 6 H 1.48497 * 109.46899 * 60.00093 * 3 2 1 7 7 C 1.38799 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99869 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00114 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47443 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99949 * 354.90124 * 11 10 9 13 13 N 1.34774 * 120.00014 * 174.90272 * 11 10 9 14 14 C 1.48032 * 126.93274 * 4.93978 * 13 11 10 15 15 C 1.56021 * 105.11502 * 182.01081 * 14 13 11 16 16 H 1.09002 * 116.90612 * 159.16660 * 15 14 13 17 17 C 1.57087 * 99.59983 * 32.74750 * 15 14 13 18 18 C 1.49285 * 126.92483 * 185.02181 * 13 11 10 19 19 H 1.08998 * 116.75485 * 16.45073 * 18 13 11 20 20 C 1.56009 * 104.13070 * 246.87009 * 18 13 11 21 21 N 1.48277 * 105.07280 * 288.79885 * 20 18 13 22 22 C 1.46906 * 111.00106 * 122.54233 * 21 20 18 23 23 C 1.50701 * 109.47052 * 187.18132 * 22 21 20 24 24 C 1.33639 * 122.75263 * 95.60811 * 23 22 21 25 25 S 1.76192 * 107.92410 * 179.97438 * 24 23 22 26 26 C 1.70972 * 90.28621 * 359.97438 * 25 24 23 27 27 N 1.29031 * 110.16331 * 359.73574 * 26 25 24 28 28 H 0.96994 * 119.99852 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47459 * 60.00001 * 10 9 7 30 30 H 1.08997 * 109.47468 * 299.99918 * 10 9 7 31 31 H 1.09002 * 110.36287 * 63.07229 * 14 13 11 32 32 H 1.08998 * 110.34710 * 300.94083 * 14 13 11 33 33 H 1.08992 * 112.35966 * 191.75154 * 17 15 14 34 34 H 1.08996 * 112.35828 * 64.41675 * 17 15 14 35 35 H 1.09001 * 110.31759 * 47.69961 * 20 18 13 36 36 H 1.09000 * 110.32298 * 169.79520 * 20 18 13 37 37 H 1.09000 * 109.46966 * 307.18158 * 22 21 20 38 38 H 1.08999 * 109.46871 * 67.17903 * 22 21 20 39 39 H 1.08004 * 126.03423 * 359.97438 * 24 23 22 40 40 H 1.07999 * 124.92013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7952 -5.5038 0.0918 13 7 2.8400 -6.3413 -0.1050 14 6 4.3190 -6.2798 -0.1239 15 6 4.7853 -7.7567 -0.3123 16 1 5.7934 -7.9104 -0.6974 17 6 3.6058 -8.2925 -1.2008 18 6 2.4832 -7.7859 -0.2258 19 1 1.4554 -8.0155 -0.5069 20 6 2.9903 -8.4163 1.1081 21 7 4.4691 -8.4076 1.0010 22 6 5.0733 -7.6653 2.1154 23 6 6.5556 -7.5264 1.8815 24 6 7.1004 -6.4435 1.3190 25 16 8.8425 -6.6940 1.2359 26 6 8.6652 -8.2296 1.9664 27 7 7.4214 -8.4600 2.2212 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7313 -0.8905 31 1 4.6941 -5.8819 0.8191 32 1 4.6621 -5.6654 -0.9563 33 1 3.6160 -9.3785 -1.2926 34 1 3.5629 -7.8016 -2.1730 35 1 2.6686 -7.8140 1.9577 36 1 2.6224 -9.4375 1.2080 37 1 4.6214 -6.6755 2.1801 38 1 4.9014 -8.2048 3.0468 39 1 6.5671 -5.5693 0.9759 40 1 9.4771 -8.9066 2.1873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714984104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:01 Heat of formation + Delta-G solvation = 68.114484 kcal Electronic energy + Delta-G solvation = -24751.357309 eV Core-core repulsion = 21207.073836 eV Total energy + Delta-G solvation = -3544.283472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55656 -39.89197 -38.18676 -34.31661 -32.47293 -32.33239 -30.36981 -29.75394 -28.64313 -26.71991 -25.55323 -24.92251 -24.56388 -21.59528 -20.87082 -19.91649 -18.79397 -18.34341 -17.80768 -16.92690 -16.59001 -16.22943 -15.64965 -15.42150 -14.84765 -14.57623 -14.44322 -14.27973 -13.89009 -13.70790 -13.48361 -13.17854 -12.96469 -12.62583 -12.43568 -12.27303 -12.12582 -11.90135 -11.71611 -11.51667 -11.34004 -11.26544 -11.10587 -11.05982 -10.79465 -9.95585 -9.85248 -9.77615 -9.52347 -9.26796 -9.11544 -8.77552 -8.38386 -8.28253 -6.55257 -6.25979 -3.97053 0.38173 1.06963 1.41029 2.42031 2.74918 2.96549 3.18216 3.21370 3.27392 3.51931 3.63553 3.83821 4.07376 4.15834 4.27803 4.45060 4.66067 4.73042 4.80583 4.89841 4.96831 5.07024 5.09311 5.17806 5.18991 5.39835 5.42990 5.49016 5.56291 5.58439 5.63650 5.70267 5.75467 5.80344 5.83319 6.05623 6.22517 6.42830 6.64161 7.42814 7.55152 7.60432 8.30828 8.47284 9.19374 10.81502 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003178 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.592481 B = 8807.802529 C =10617.704956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.551 3.449 12 O -0.512 6.512 13 N -0.628 5.628 14 C 0.063 3.937 15 C 0.054 3.946 16 H 0.128 0.872 17 C -0.134 4.134 18 C 0.114 3.886 19 H 0.129 0.871 20 C 0.026 3.974 21 N -0.504 5.504 22 C 0.113 3.887 23 C 0.076 3.924 24 C -0.253 4.253 25 S 0.120 5.880 26 C 0.019 3.981 27 N -0.453 5.453 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.241 -18.399 0.898 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.297 4.297 11 C 0.340 3.660 12 O -0.386 6.386 13 N -0.367 5.367 14 C -0.061 4.061 15 C -0.054 4.054 16 H 0.146 0.854 17 C -0.173 4.173 18 C 0.011 3.989 19 H 0.147 0.853 20 C -0.102 4.102 21 N -0.228 5.228 22 C -0.018 4.018 23 C -0.057 4.057 24 C -0.393 4.393 25 S 0.373 5.627 26 C -0.280 4.280 27 N -0.166 5.166 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.196 0.804 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 17.164 -18.960 0.928 25.592 hybrid contribution 1.009 2.171 0.186 2.401 sum 18.173 -16.790 1.113 24.767 Atomic orbital electron populations 1.70025 1.05949 1.27404 1.46808 1.24996 0.95033 0.99038 0.94487 0.86117 0.79551 0.81862 0.77969 1.19640 1.20501 1.20509 1.22882 0.94874 0.91578 1.59019 0.90950 1.85410 1.04806 0.96341 1.96693 1.23504 1.06518 0.95130 1.04555 1.20034 0.85627 0.85332 0.74993 1.90713 1.15069 1.84971 1.47863 1.49349 1.06048 1.06099 1.75207 1.23308 0.81362 0.98978 1.02478 1.24663 0.99563 0.90411 0.90771 0.85410 1.23959 0.93565 1.01896 0.97838 1.23946 1.00006 0.80202 0.94778 0.85337 1.23727 0.86992 1.01688 0.97809 1.65131 1.08200 1.48623 1.00869 1.20921 0.86596 0.98381 0.95874 1.20085 0.96813 0.89324 0.99486 1.27081 0.96671 1.05153 1.10428 1.84152 1.05670 1.16201 1.56713 1.28446 0.97427 0.99680 1.02429 1.66124 1.00756 1.30611 1.19104 0.92183 0.89545 0.89534 0.90541 0.90816 0.88717 0.89598 0.91532 0.88953 0.91925 0.88671 0.80443 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.82 16 10 C -0.15 -2.98 5.45 36.01 0.20 -2.79 16 11 C 0.55 10.48 7.90 -10.99 -0.09 10.40 16 12 O -0.51 -11.70 16.26 5.56 0.09 -11.61 16 13 N -0.63 -8.81 2.95 -156.66 -0.46 -9.27 16 14 C 0.06 0.68 4.82 -1.58 -0.01 0.67 16 15 C 0.05 0.49 4.10 -62.17 -0.25 0.24 16 16 H 0.13 1.08 7.81 -51.93 -0.41 0.67 16 17 C -0.13 -1.21 6.80 -22.30 -0.15 -1.37 16 18 C 0.11 1.32 5.22 -62.56 -0.33 0.99 16 19 H 0.13 1.54 8.10 -51.93 -0.42 1.12 16 20 C 0.03 0.28 6.27 -1.45 -0.01 0.27 16 21 N -0.50 -5.06 5.37 -217.98 -1.17 -6.23 16 22 C 0.11 1.14 4.81 -4.97 -0.02 1.12 16 23 C 0.08 0.74 5.39 -84.23 -0.45 0.29 16 24 C -0.25 -2.16 9.62 29.12 0.28 -1.88 16 25 S 0.12 0.82 23.22 -107.50 -2.50 -1.67 16 26 C 0.02 0.14 12.23 51.59 0.63 0.77 16 27 N -0.45 -4.66 10.53 -11.90 -0.13 -4.79 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.08 0.81 3.68 -51.93 -0.19 0.62 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.78 7.58 -51.93 -0.39 0.39 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.66 5.75 -51.93 -0.30 0.37 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.18 1.39 6.42 -52.48 -0.34 1.05 16 40 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -34.81 351.11 -10.36 -45.17 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.97 Total: 0.14 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.01 Total: -4.16 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -1.02 Total: -45.57 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -4.71 Total: -5.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.81 -10.36 -45.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714984104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.284 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds