Wall clock time and date at job start Tue Mar 31 2020 22:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86808 * 119.99815 * 2 1 4 4 H 1.48496 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47122 * 300.00238 * 3 2 1 6 6 H 1.48497 * 109.46899 * 60.00093 * 3 2 1 7 7 C 1.38799 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99869 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00114 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47443 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99949 * 354.90124 * 11 10 9 13 13 N 1.34774 * 120.00014 * 174.90272 * 11 10 9 14 14 C 1.48032 * 126.93274 * 4.93978 * 13 11 10 15 15 C 1.56021 * 105.11502 * 182.01081 * 14 13 11 16 16 H 1.09002 * 116.90612 * 159.16660 * 15 14 13 17 17 C 1.57087 * 99.59983 * 32.74750 * 15 14 13 18 18 C 1.49285 * 126.92483 * 185.02181 * 13 11 10 19 19 H 1.08998 * 116.75485 * 16.45073 * 18 13 11 20 20 C 1.56009 * 104.13070 * 246.87009 * 18 13 11 21 21 N 1.48277 * 105.07280 * 288.79885 * 20 18 13 22 22 C 1.46906 * 111.00106 * 122.54233 * 21 20 18 23 23 C 1.50701 * 109.47052 * 187.18132 * 22 21 20 24 24 C 1.33639 * 122.75263 * 95.60811 * 23 22 21 25 25 S 1.76192 * 107.92410 * 179.97438 * 24 23 22 26 26 C 1.70972 * 90.28621 * 359.97438 * 25 24 23 27 27 N 1.29031 * 110.16331 * 359.73574 * 26 25 24 28 28 H 0.96994 * 119.99852 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47459 * 60.00001 * 10 9 7 30 30 H 1.08997 * 109.47468 * 299.99918 * 10 9 7 31 31 H 1.09002 * 110.36287 * 63.07229 * 14 13 11 32 32 H 1.08998 * 110.34710 * 300.94083 * 14 13 11 33 33 H 1.08992 * 112.35966 * 191.75154 * 17 15 14 34 34 H 1.08996 * 112.35828 * 64.41675 * 17 15 14 35 35 H 1.09001 * 110.31759 * 47.69961 * 20 18 13 36 36 H 1.09000 * 110.32298 * 169.79520 * 20 18 13 37 37 H 1.09000 * 109.46966 * 307.18158 * 22 21 20 38 38 H 1.08999 * 109.46871 * 67.17903 * 22 21 20 39 39 H 1.08004 * 126.03423 * 359.97438 * 24 23 22 40 40 H 1.07999 * 124.92013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7952 -5.5038 0.0918 13 7 2.8400 -6.3413 -0.1050 14 6 4.3190 -6.2798 -0.1239 15 6 4.7853 -7.7567 -0.3123 16 1 5.7934 -7.9104 -0.6974 17 6 3.6058 -8.2925 -1.2008 18 6 2.4832 -7.7859 -0.2258 19 1 1.4554 -8.0155 -0.5069 20 6 2.9903 -8.4163 1.1081 21 7 4.4691 -8.4076 1.0010 22 6 5.0733 -7.6653 2.1154 23 6 6.5556 -7.5264 1.8815 24 6 7.1004 -6.4435 1.3190 25 16 8.8425 -6.6940 1.2359 26 6 8.6652 -8.2296 1.9664 27 7 7.4214 -8.4600 2.2212 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7313 -0.8905 31 1 4.6941 -5.8819 0.8191 32 1 4.6621 -5.6654 -0.9563 33 1 3.6160 -9.3785 -1.2926 34 1 3.5629 -7.8016 -2.1730 35 1 2.6686 -7.8140 1.9577 36 1 2.6224 -9.4375 1.2080 37 1 4.6214 -6.6755 2.1801 38 1 4.9014 -8.2048 3.0468 39 1 6.5671 -5.5693 0.9759 40 1 9.4771 -8.9066 2.1873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714984104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:00 Heat of formation + Delta-G solvation = 42.870167 kcal Electronic energy + Delta-G solvation = -24752.451985 eV Core-core repulsion = 21207.073836 eV Total energy + Delta-G solvation = -3545.378148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.47219 -40.64920 -39.56241 -35.33524 -34.61853 -33.31671 -31.32320 -30.72531 -29.88749 -27.70937 -27.43359 -25.87791 -25.27519 -22.64251 -21.75951 -20.66942 -20.12662 -19.41101 -18.99271 -18.31568 -17.53639 -17.03442 -16.91396 -16.63418 -16.53969 -16.08748 -15.72011 -15.17411 -15.00487 -14.67382 -14.45792 -14.34013 -13.98113 -13.88591 -13.63942 -13.31293 -13.18520 -13.04509 -12.94270 -12.88669 -12.67854 -12.52774 -12.31570 -12.16010 -12.00596 -11.74097 -11.18880 -11.06538 -10.55899 -10.38681 -10.33043 -9.95930 -9.75525 -9.31348 -8.71977 -8.37964 -6.17022 -0.20663 0.51149 0.82804 1.17688 1.39430 1.40694 1.49361 1.54110 1.76038 1.94066 2.23675 2.83559 2.96397 3.13536 3.22631 3.29386 3.43399 3.62084 3.73435 3.90300 3.93515 4.13182 4.14177 4.28079 4.31449 4.35928 4.39132 4.41631 4.59150 4.67081 4.70936 4.80656 4.81935 4.93228 4.97244 5.12517 5.20330 5.38318 5.62189 5.81640 6.16467 6.32062 6.82700 7.02879 7.03455 8.71576 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003178 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.592481 B = 8807.802529 C =10617.704956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.120 4.120 11 C 0.550 3.450 12 O -0.562 6.562 13 N -0.619 5.619 14 C 0.056 3.944 15 C 0.067 3.933 16 H 0.146 0.854 17 C -0.120 4.120 18 C 0.101 3.899 19 H 0.120 0.880 20 C 0.033 3.967 21 N -0.503 5.503 22 C 0.116 3.884 23 C 0.064 3.936 24 C -0.265 4.265 25 S 0.161 5.839 26 C 0.019 3.981 27 N -0.488 5.488 28 H 0.272 0.728 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.182 0.818 40 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.793 -18.876 0.305 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.271 4.271 11 C 0.339 3.661 12 O -0.441 6.441 13 N -0.355 5.355 14 C -0.067 4.067 15 C -0.041 4.041 16 H 0.163 0.837 17 C -0.158 4.158 18 C -0.001 4.001 19 H 0.138 0.862 20 C -0.095 4.095 21 N -0.227 5.227 22 C -0.015 4.015 23 C -0.069 4.069 24 C -0.406 4.406 25 S 0.414 5.586 26 C -0.278 4.278 27 N -0.202 5.202 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.200 0.800 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 20.779 -19.483 0.329 28.486 hybrid contribution 0.032 2.177 0.389 2.212 sum 20.811 -17.306 0.718 27.076 Atomic orbital electron populations 1.70186 1.07987 1.28629 1.47900 1.26138 0.95974 1.03321 0.93641 0.84901 0.78608 0.76251 0.78162 1.17981 1.19788 1.19910 1.23201 0.95265 0.91864 1.59026 0.90004 1.85586 1.10244 0.99188 1.97010 1.23290 1.03505 0.94300 1.05969 1.19732 0.85395 0.85770 0.75242 1.90691 1.17114 1.85583 1.50686 1.49260 1.07248 1.06209 1.72744 1.23590 0.78976 1.00803 1.03327 1.24721 1.00307 0.88751 0.90308 0.83682 1.23937 0.91678 1.03006 0.97180 1.24209 1.00772 0.78490 0.96677 0.86204 1.23676 0.87453 1.02096 0.96318 1.65179 1.07531 1.48703 1.01309 1.20817 0.87408 0.97634 0.95594 1.19976 0.96431 0.89990 1.00481 1.27195 0.98141 1.04914 1.10301 1.84034 1.03757 1.15209 1.55585 1.28957 0.97283 1.00397 1.01198 1.66126 1.01873 1.31551 1.20643 0.91922 0.88137 0.87766 0.90076 0.89552 0.86789 0.89153 0.93365 0.87298 0.92805 0.89516 0.80044 0.75690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.26 20.58 -56.49 -1.16 -9.42 16 10 C -0.12 -4.88 5.45 71.24 0.39 -4.49 16 11 C 0.55 21.22 7.90 87.66 0.69 21.91 16 12 O -0.56 -26.77 16.26 -3.02 -0.05 -26.82 16 13 N -0.62 -16.96 2.95 -767.95 -2.27 -19.22 16 14 C 0.06 1.10 4.82 87.13 0.42 1.52 16 15 C 0.07 1.06 4.10 46.80 0.19 1.25 16 16 H 0.15 1.92 7.81 -2.39 -0.02 1.91 16 17 C -0.12 -1.87 6.80 33.46 0.23 -1.64 16 18 C 0.10 2.25 5.22 46.93 0.24 2.50 16 19 H 0.12 2.89 8.10 -2.39 -0.02 2.87 16 20 C 0.03 0.66 6.27 87.08 0.55 1.21 16 21 N -0.50 -9.27 5.37 -843.56 -4.53 -13.80 16 22 C 0.12 2.25 4.81 85.56 0.41 2.66 16 23 C 0.06 1.15 5.39 41.52 0.22 1.38 16 24 C -0.27 -3.95 9.62 66.78 0.64 -3.31 16 25 S 0.16 1.75 23.22 -56.49 -1.31 0.44 16 26 C 0.02 0.24 12.23 130.65 1.60 1.83 16 27 N -0.49 -9.13 10.53 -191.55 -2.02 -11.14 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.10 3.85 8.14 -2.40 -0.02 3.84 16 31 H 0.08 1.59 3.68 -2.39 -0.01 1.58 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.15 7.58 -2.39 -0.02 1.13 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.12 5.75 -2.39 -0.01 1.11 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.18 2.44 6.42 -2.91 -0.02 2.42 16 40 H 0.23 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -77.96 351.11 -1.26 -79.21 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.07 Total: 15.43 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.70 Total: -4.43 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -8.53 Total: -99.76 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -2.47 Total: -8.98 kcal Total: -77.96 -1.26 -79.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714984104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.082 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds