Wall clock time and date at job start Tue Mar 31 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 C 1.50705 * 109.46930 * 270.02153 * 14 13 12 16 16 O 1.21546 * 120.00134 * 359.97438 * 15 14 13 17 17 N 1.32423 * 119.99995 * 179.97438 * 15 14 13 18 18 S 1.49350 * 120.00118 * 179.97438 * 17 15 14 19 19 O 1.42097 * 107.63835 * 57.55179 * 18 17 15 20 20 C 1.82326 * 107.95721 * 294.15395 * 18 17 15 21 21 C 1.53813 * 107.52324 * 291.92364 * 20 18 17 22 22 O 1.42526 * 109.57344 * 302.09207 * 21 20 18 23 23 C 1.42520 * 116.07147 * 75.05933 * 22 21 20 24 24 C 1.53628 * 109.53983 * 284.93996 * 23 22 21 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 1.09001 * 109.82964 * 51.51153 * 20 18 17 33 33 H 1.09003 * 109.83143 * 172.45449 * 20 18 17 34 34 H 1.08998 * 109.44285 * 182.05671 * 21 20 18 35 35 H 1.09007 * 109.43339 * 62.11544 * 21 20 18 36 36 H 1.09004 * 109.46137 * 164.92481 * 23 22 21 37 37 H 1.09004 * 109.45070 * 44.95968 * 23 22 21 38 38 H 1.08994 * 109.83101 * 298.42035 * 24 23 22 39 39 H 1.08998 * 109.88682 * 177.50206 * 24 23 22 40 40 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 41 41 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 6 4.6506 -7.6388 0.9308 16 8 4.2191 -7.0665 1.9124 17 7 5.3542 -8.7521 1.0693 18 16 5.6181 -9.3041 2.4317 19 8 4.3616 -9.5282 3.0562 20 6 6.6851 -8.1224 3.3200 21 6 8.0617 -8.1349 2.6338 22 8 8.5930 -9.4572 2.6534 23 6 8.0132 -10.3789 1.7339 24 6 6.6288 -10.8096 2.2421 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 6.2533 -7.1229 3.2681 33 1 6.7884 -8.4278 4.3613 34 1 8.7375 -7.4640 3.1641 35 1 7.9553 -7.8016 1.6014 36 1 8.6556 -11.2550 1.6440 37 1 7.9101 -9.9026 0.7589 38 1 6.7280 -11.3120 3.2043 39 1 6.1614 -11.4805 1.5213 40 1 5.2812 -4.5470 -0.1945 41 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772134335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:53 Heat of formation + Delta-G solvation = -64.066635 kcal Electronic energy + Delta-G solvation = -26725.329767 eV Core-core repulsion = 22700.268869 eV Total energy + Delta-G solvation = -4025.060898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.78195 -39.51517 -38.70419 -36.69007 -36.38727 -33.35695 -32.89497 -32.37053 -31.42835 -31.12696 -30.02907 -26.69309 -25.25236 -25.07638 -23.44049 -22.01091 -21.83674 -20.09552 -18.42153 -17.87638 -17.51168 -17.34823 -16.99353 -16.88580 -16.43003 -16.09690 -15.52936 -14.82494 -14.69907 -14.46884 -14.37401 -14.08718 -13.97494 -13.91044 -13.43112 -13.38838 -13.31731 -12.64468 -12.59408 -12.51062 -12.36188 -11.75265 -11.61020 -11.36401 -11.24507 -11.15304 -10.84626 -10.80982 -10.60440 -10.49896 -10.35218 -10.11892 -9.78405 -9.73865 -9.22625 -8.74613 -8.02861 -7.04157 -6.37094 -3.95142 -1.12578 1.80852 2.35463 2.37105 2.60930 2.74174 2.86124 3.17257 3.18070 3.23839 3.36059 3.58217 3.93145 4.03184 4.10005 4.21166 4.32523 4.59431 4.67195 4.76944 4.82658 5.00941 5.14679 5.18432 5.34937 5.38734 5.48533 5.55806 5.85398 5.94450 6.03092 6.21290 6.32748 6.49209 6.55165 6.84314 7.04552 7.16490 7.36444 7.49942 7.55071 7.95838 8.08719 8.16861 9.08763 9.81333 10.81426 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.002392 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.304180 B =11703.325282 C =12268.377723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.156 3.844 11 C -0.191 4.191 12 C -0.060 4.060 13 C -0.171 4.171 14 C -0.049 4.049 15 C 0.543 3.457 16 O -0.554 6.554 17 N -1.118 6.118 18 S 2.271 3.729 19 O -0.917 6.917 20 C -0.611 4.611 21 C 0.070 3.930 22 O -0.377 6.377 23 C 0.063 3.937 24 C -0.522 4.522 25 C -0.059 4.059 26 C -0.233 4.233 27 H 0.268 0.732 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.103 0.897 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.699 -22.847 2.796 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.210 4.210 12 C -0.078 4.078 13 C -0.173 4.173 14 C -0.092 4.092 15 C 0.330 3.670 16 O -0.431 6.431 17 N -1.030 6.030 18 S 2.468 3.532 19 O -0.903 6.903 20 C -0.746 4.746 21 C -0.008 4.008 22 O -0.296 6.296 23 C -0.015 4.015 24 C -0.660 4.660 25 C -0.077 4.077 26 C -0.252 4.252 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.122 0.878 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.505 -22.736 3.364 30.144 hybrid contribution 0.417 1.107 0.481 1.277 sum 19.922 -21.629 3.845 29.656 Atomic orbital electron populations 1.70053 1.05933 1.27405 1.46585 1.25284 0.95833 0.98783 0.96758 0.85650 0.79110 0.80495 0.78164 1.19150 1.20202 1.20232 1.21371 0.91799 0.80900 1.52470 0.89083 1.83979 1.34329 1.11434 1.78637 1.19380 0.90298 0.87987 0.92107 1.20166 0.99481 0.90342 1.11010 1.20452 0.92898 0.96647 0.97798 1.18863 0.93414 0.92969 1.12013 1.20095 1.00997 0.95477 0.92619 1.20275 0.74717 0.78762 0.93250 1.90900 1.50424 1.61495 1.40329 1.70872 1.58017 1.37992 1.36075 1.14174 0.79340 0.83043 0.76639 1.93559 1.32858 1.84508 1.79365 1.30849 1.11255 1.18876 1.13596 1.22633 0.92070 0.84541 1.01553 1.87787 1.60769 1.20427 1.60567 1.22733 0.90360 0.95376 0.93078 1.29844 1.09264 1.13749 1.13093 1.20500 0.97972 0.91813 0.97460 1.21096 0.93802 0.98755 1.11571 0.92175 0.86574 0.87316 0.88700 0.88632 0.82418 0.84497 0.85894 0.90018 0.85394 0.89058 0.83239 0.81961 0.87846 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.17 13.67 55.48 0.76 -25.41 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 9 O -0.18 -5.41 9.76 0.05 0.00 -5.40 16 10 C 0.16 4.04 6.65 -39.11 -0.26 3.78 16 11 C -0.19 -4.44 9.99 -39.39 -0.39 -4.83 16 12 C -0.06 -1.21 9.69 -39.60 -0.38 -1.60 16 13 C -0.17 -3.26 4.38 -104.58 -0.46 -3.72 16 14 C -0.05 -0.73 5.90 -29.03 -0.17 -0.91 16 15 C 0.54 8.77 7.39 -12.02 -0.09 8.68 16 16 O -0.55 -11.14 14.17 -10.96 -0.16 -11.30 16 17 N -1.12 -13.35 10.23 30.51 0.31 -13.04 16 18 S 2.27 21.59 3.85 -107.50 -0.41 21.18 16 19 O -0.92 -14.26 17.32 -51.52 -0.89 -15.15 16 20 C -0.61 -4.61 6.57 37.58 0.25 -4.36 16 21 C 0.07 0.37 6.71 37.58 0.25 0.62 16 22 O -0.38 -1.81 10.41 -35.23 -0.37 -2.18 16 23 C 0.06 0.16 6.70 37.48 0.25 0.42 16 24 C -0.52 -1.65 6.85 37.48 0.26 -1.40 16 25 C -0.06 -1.17 9.69 -39.61 -0.38 -1.56 16 26 C -0.23 -5.42 9.17 -39.39 -0.36 -5.78 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 29 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 31 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 32 H 0.16 1.55 7.17 -51.93 -0.37 1.18 16 33 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.39 7.92 -51.92 -0.41 -0.02 16 36 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.09 0.19 7.92 -51.93 -0.41 -0.22 16 38 H 0.15 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.16 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -41.52 358.17 -6.80 -48.32 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.12 Total: 2.15 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -1.30 Total: -20.69 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 1.07 Total: -38.45 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.41 Total: -34.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 21.59 SS G_CDS: -0.41 Total: 21.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -41.52 -6.80 -48.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772134335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.749 kcal (2) G-P(sol) polarization free energy of solvation -41.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds