Wall clock time and date at job start Tue Mar 31 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 C 1.50705 * 109.46930 * 270.02153 * 14 13 12 16 16 O 1.21546 * 120.00134 * 359.97438 * 15 14 13 17 17 N 1.32423 * 119.99995 * 179.97438 * 15 14 13 18 18 S 1.49350 * 120.00118 * 179.97438 * 17 15 14 19 19 O 1.42097 * 107.63835 * 57.55179 * 18 17 15 20 20 C 1.82326 * 107.95721 * 294.15395 * 18 17 15 21 21 C 1.53813 * 107.52324 * 291.92364 * 20 18 17 22 22 O 1.42526 * 109.57344 * 302.09207 * 21 20 18 23 23 C 1.42520 * 116.07147 * 75.05933 * 22 21 20 24 24 C 1.53628 * 109.53983 * 284.93996 * 23 22 21 25 25 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 26 26 C 1.38101 * 120.07230 * 359.97438 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 30 30 H 1.09003 * 109.47622 * 30.01908 * 14 13 12 31 31 H 1.09004 * 109.47221 * 150.02459 * 14 13 12 32 32 H 1.09001 * 109.82964 * 51.51153 * 20 18 17 33 33 H 1.09003 * 109.83143 * 172.45449 * 20 18 17 34 34 H 1.08998 * 109.44285 * 182.05671 * 21 20 18 35 35 H 1.09007 * 109.43339 * 62.11544 * 21 20 18 36 36 H 1.09004 * 109.46137 * 164.92481 * 23 22 21 37 37 H 1.09004 * 109.45070 * 44.95968 * 23 22 21 38 38 H 1.08994 * 109.83101 * 298.42035 * 24 23 22 39 39 H 1.08998 * 109.88682 * 177.50206 * 24 23 22 40 40 H 1.07999 * 119.96698 * 179.97438 * 25 13 12 41 41 H 1.07992 * 120.03608 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 6 4.6506 -7.6388 0.9308 16 8 4.2191 -7.0665 1.9124 17 7 5.3542 -8.7521 1.0693 18 16 5.6181 -9.3041 2.4317 19 8 4.3616 -9.5282 3.0562 20 6 6.6851 -8.1224 3.3200 21 6 8.0617 -8.1349 2.6338 22 8 8.5930 -9.4572 2.6534 23 6 8.0132 -10.3789 1.7339 24 6 6.6288 -10.8096 2.2421 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0956 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6953 -6.8452 -0.4323 30 1 3.8358 -7.8156 -1.0337 31 1 5.3321 -6.8566 -0.9342 32 1 6.2533 -7.1229 3.2681 33 1 6.7884 -8.4278 4.3613 34 1 8.7375 -7.4640 3.1641 35 1 7.9553 -7.8016 1.6014 36 1 8.6556 -11.2550 1.6440 37 1 7.9101 -9.9026 0.7589 38 1 6.7280 -11.3120 3.2043 39 1 6.1614 -11.4805 1.5213 40 1 5.2812 -4.5470 -0.1945 41 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772134335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:52 Heat of formation + Delta-G solvation = -97.938931 kcal Electronic energy + Delta-G solvation = -26726.798580 eV Core-core repulsion = 22700.268869 eV Total energy + Delta-G solvation = -4026.529711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14047 -40.42993 -39.85006 -38.25803 -37.53552 -34.40691 -34.39013 -33.27837 -32.78959 -31.82347 -31.77895 -28.35275 -27.06454 -25.62105 -23.82913 -23.64425 -23.29117 -21.58855 -19.84937 -19.23795 -18.83856 -18.12989 -17.97190 -17.65448 -17.28425 -16.74447 -16.42901 -16.33330 -16.10251 -15.92022 -15.65938 -15.46009 -15.27309 -14.90674 -14.70985 -14.40482 -14.31930 -14.10620 -13.89528 -13.59989 -13.40337 -13.01410 -12.96565 -12.76811 -12.53737 -12.26817 -12.24039 -12.08323 -11.99867 -11.73286 -11.22608 -11.18234 -11.15366 -10.93817 -10.77470 -10.69213 -9.78112 -8.90599 -8.47403 -6.15826 -1.71330 0.59549 0.66654 1.07402 1.33833 1.42994 1.53363 1.61208 1.95505 2.17718 2.49227 2.80093 2.85819 3.12261 3.15996 3.50078 3.56813 3.67501 3.78398 3.97298 4.05625 4.07538 4.15798 4.19353 4.28656 4.53163 4.54333 4.58588 4.63143 4.69604 4.79351 4.80167 4.82460 5.06773 5.14425 5.29107 5.43555 5.56801 5.69795 5.78934 5.92523 6.02484 6.22447 6.96760 7.00756 7.78439 8.76601 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.002392 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.304180 B =11703.325282 C =12268.377723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.023 2.977 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.207 4.207 12 C -0.064 4.064 13 C -0.149 4.149 14 C -0.053 4.053 15 C 0.535 3.465 16 O -0.610 6.610 17 N -1.111 6.111 18 S 2.228 3.772 19 O -0.994 6.994 20 C -0.598 4.598 21 C 0.072 3.928 22 O -0.380 6.380 23 C 0.051 3.949 24 C -0.468 4.468 25 C -0.058 4.058 26 C -0.241 4.241 27 H 0.273 0.727 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.169 0.831 37 H 0.101 0.899 38 H 0.184 0.816 39 H 0.192 0.808 40 H 0.145 0.855 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.750 -26.041 2.287 36.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.223 4.223 3 Si 0.842 3.158 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.226 4.226 12 C -0.082 4.082 13 C -0.151 4.151 14 C -0.095 4.095 15 C 0.323 3.677 16 O -0.492 6.492 17 N -1.018 6.018 18 S 2.431 3.569 19 O -0.980 6.980 20 C -0.735 4.735 21 C -0.006 4.006 22 O -0.298 6.298 23 C -0.026 4.026 24 C -0.609 4.609 25 C -0.076 4.076 26 C -0.260 4.260 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.186 0.814 37 H 0.119 0.881 38 H 0.201 0.799 39 H 0.209 0.791 40 H 0.163 0.837 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 24.565 -25.990 2.815 35.873 hybrid contribution -0.885 1.603 0.684 1.954 sum 23.679 -24.388 3.499 34.172 Atomic orbital electron populations 1.70206 1.08142 1.28750 1.49083 1.26677 0.96914 1.02880 0.95840 0.84478 0.78239 0.74507 0.78596 1.17297 1.19078 1.19402 1.21902 0.92579 0.81421 1.53118 0.88054 1.83943 1.35995 1.12607 1.81563 1.19890 0.91759 0.87807 0.94293 1.20397 0.99762 0.90802 1.11643 1.20855 0.93873 0.96634 0.96886 1.19445 0.93353 0.94832 1.07453 1.20227 1.02319 0.93705 0.93257 1.20410 0.74762 0.79772 0.92771 1.90895 1.52893 1.63368 1.42059 1.70615 1.56939 1.36106 1.38161 1.15231 0.80279 0.85728 0.75693 1.93507 1.38206 1.86287 1.79966 1.30684 1.11522 1.16539 1.14722 1.22714 0.90541 0.85584 1.01761 1.87803 1.60636 1.20130 1.61218 1.23211 0.89957 0.96508 0.92959 1.29896 1.06971 1.07942 1.16084 1.20942 0.99937 0.90798 0.95922 1.21246 0.92952 1.00100 1.11674 0.91835 0.87152 0.84553 0.86499 0.84907 0.85259 0.82622 0.84529 0.89461 0.81350 0.88136 0.79860 0.79059 0.83735 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.20 13.67 21.62 0.30 -58.90 16 2 C -0.03 -1.56 5.49 84.84 0.47 -1.09 16 3 Si 1.02 44.61 29.55 68.60 2.03 46.64 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.41 -25.49 9.49 67.92 0.64 -24.84 16 8 H 0.10 5.73 5.20 -2.91 -0.02 5.71 16 9 O -0.23 -15.16 9.76 -22.72 -0.22 -15.38 16 10 C 0.11 6.22 6.65 22.58 0.15 6.37 16 11 C -0.21 -10.18 9.99 22.39 0.22 -9.96 16 12 C -0.06 -2.64 9.69 22.25 0.22 -2.42 16 13 C -0.15 -5.52 4.38 -19.84 -0.09 -5.61 16 14 C -0.05 -1.45 5.90 29.10 0.17 -1.27 16 15 C 0.53 16.64 7.39 88.02 0.65 17.29 16 16 O -0.61 -25.01 14.17 11.71 0.17 -24.85 16 17 N -1.11 -24.18 10.23 -176.97 -1.81 -25.99 16 18 S 2.23 38.38 3.85 -56.49 -0.22 38.17 16 19 O -0.99 -31.53 17.32 -133.41 -2.31 -33.84 16 20 C -0.60 -8.12 6.57 72.26 0.47 -7.64 16 21 C 0.07 0.52 6.71 72.26 0.48 1.01 16 22 O -0.38 -1.71 10.41 -148.98 -1.55 -3.26 16 23 C 0.05 -0.05 6.70 72.19 0.48 0.44 16 24 C -0.47 -0.41 6.85 72.19 0.49 0.09 16 25 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 26 C -0.24 -11.54 9.17 22.39 0.21 -11.34 16 27 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 28 H 0.11 5.37 8.06 -2.91 -0.02 5.35 16 29 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 30 H 0.12 2.70 8.08 -2.39 -0.02 2.69 16 31 H 0.13 2.62 8.08 -2.39 -0.02 2.60 16 32 H 0.13 2.60 7.17 -2.39 -0.02 2.59 16 33 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.54 7.92 -2.38 -0.02 0.52 16 36 H 0.17 -1.25 8.14 -2.38 -0.02 -1.27 16 37 H 0.10 -0.17 7.92 -2.39 -0.02 -0.19 16 38 H 0.18 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.19 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 41 H 0.12 5.81 5.64 -2.91 -0.02 5.80 16 Total: -1.00 -102.42 358.17 2.23 -100.19 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.06 Total: 18.26 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.79 Total: -41.03 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.52 Total: -84.89 kcal Atomic # 8 Polarization: -73.41 SS G_CDS: -3.92 Total: -77.33 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 38.38 SS G_CDS: -0.22 Total: 38.17 kcal Total: -102.42 2.23 -100.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772134335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.254 kcal (2) G-P(sol) polarization free energy of solvation -102.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds