Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47034 * 240.00143 * 3 2 1 5 5 H 1.48498 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46890 * 120.00250 * 3 2 1 7 7 C 1.37876 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00097 * 186.62246 * 7 2 1 9 9 C 1.50697 * 120.00185 * 6.62494 * 7 2 1 10 10 C 1.53006 * 113.00240 * 65.38991 * 9 7 2 11 11 O 1.45206 * 109.46750 * 53.52351 * 10 9 7 12 12 C 1.34229 * 116.99798 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00148 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99721 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47019 * 180.02562 * 14 12 11 16 16 N 1.46505 * 109.47058 * 179.97438 * 15 14 12 17 17 C 1.34770 * 119.99849 * 179.97438 * 16 15 14 18 18 O 1.21638 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.47192 * 119.99926 * 180.02562 * 17 16 15 20 20 C 1.44423 * 123.46137 * 179.73093 * 19 17 16 21 21 C 1.32770 * 113.08334 * 179.81093 * 20 19 17 22 22 S 1.75497 * 110.57578 * 0.43750 * 21 20 19 23 23 C 1.36007 * 123.45923 * 0.02816 * 19 17 16 24 24 C 1.54039 * 113.92935 * 197.32705 * 9 7 2 25 25 O 1.44179 * 85.51625 * 91.65892 * 24 9 7 26 26 C 1.44176 * 93.34078 * 24.19624 * 25 24 9 27 27 H 0.96994 * 119.99550 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47555 * 293.52477 * 10 9 7 29 29 H 1.09004 * 109.47031 * 173.51869 * 10 9 7 30 30 H 1.08998 * 109.47762 * 59.99986 * 14 12 11 31 31 H 1.09005 * 109.46914 * 300.00012 * 14 12 11 32 32 H 1.09005 * 109.46935 * 299.99567 * 15 14 12 33 33 H 1.08995 * 109.47285 * 59.99747 * 15 14 12 34 34 H 0.96999 * 120.00021 * 0.02562 * 16 15 14 35 35 H 1.08006 * 123.45735 * 0.02562 * 20 19 17 36 36 H 1.08002 * 124.71303 * 180.18338 * 21 20 19 37 37 H 1.08000 * 124.59206 * 0.02562 * 23 19 17 38 38 H 1.09001 * 113.86761 * 205.80517 * 24 9 7 39 39 H 1.09001 * 113.86061 * 337.50756 * 24 9 7 40 40 H 1.09004 * 113.86029 * 221.65997 * 26 25 24 41 41 H 1.08998 * 113.98406 * 89.96912 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 0.1073 9 6 1.2585 -2.4947 -0.1517 10 6 0.5843 -2.6421 -1.5172 11 8 1.5661 -2.4343 -2.5667 12 6 1.1334 -2.5303 -3.8337 13 8 -0.0274 -2.7792 -4.0584 14 6 2.0954 -2.3276 -4.9758 15 6 1.3522 -2.4895 -6.3034 16 7 2.2873 -2.2919 -7.4137 17 6 1.8528 -2.3881 -8.6858 18 8 0.6842 -2.6387 -8.9121 19 6 2.7924 -2.1901 -9.8014 20 6 2.4093 -2.2815 -11.1909 21 6 3.4191 -2.0625 -12.0247 22 16 4.8971 -1.7445 -11.1335 23 6 4.1118 -1.9081 -9.6295 24 6 2.0675 -3.7327 0.2794 25 8 1.4697 -3.5316 1.5759 26 6 0.3352 -2.8240 1.0365 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2106 -1.9023 -1.6118 29 1 0.1619 -3.6429 -1.6078 30 1 2.8941 -3.0667 -4.9137 31 1 2.5218 -1.3261 -4.9183 32 1 0.9255 -3.4909 -6.3611 33 1 0.5537 -1.7502 -6.3653 34 1 3.2193 -2.0925 -7.2333 35 1 1.4039 -2.5017 -11.5182 36 1 3.3425 -2.0817 -13.1019 37 1 4.5963 -1.8028 -8.6701 38 1 1.7569 -4.6552 -0.2111 39 1 3.1469 -3.5817 0.2632 40 1 0.0407 -1.9522 1.6209 41 1 -0.5055 -3.4672 0.7768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772364640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = -102.366946 kcal Electronic energy + Delta-G solvation = -26043.207740 eV Core-core repulsion = 22016.486016 eV Total energy + Delta-G solvation = -4026.721724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24566 -39.82653 -39.09145 -37.18952 -36.01418 -35.19569 -32.95510 -31.70052 -30.14415 -29.63464 -26.00943 -25.43193 -25.23881 -24.51463 -23.42929 -21.58650 -20.43229 -19.41919 -19.02118 -18.45882 -17.41499 -17.12702 -16.50474 -16.32797 -15.75401 -15.42178 -15.35994 -14.96519 -14.81404 -14.40623 -14.36200 -14.08191 -13.94092 -13.50564 -13.42814 -13.11829 -12.82267 -12.60699 -12.28656 -12.09919 -11.90062 -11.62160 -11.54628 -11.52570 -11.01877 -10.84465 -10.51272 -10.26468 -10.14690 -9.99908 -9.59179 -9.50046 -9.46104 -9.31148 -9.10745 -8.83002 -8.80148 -8.33886 -6.21670 -4.24654 0.36100 1.12071 1.49498 1.66453 2.67805 2.72169 3.12083 3.23428 3.29040 3.30701 3.51487 4.29452 4.31040 4.51766 4.71298 4.84010 4.85528 4.95025 4.97816 5.13277 5.19199 5.40172 5.42708 5.66929 5.74289 5.82950 5.88275 5.89980 6.00830 6.14701 6.15264 6.27143 6.34102 6.50919 6.92060 7.08611 7.21981 7.24741 7.29578 7.33828 7.74239 7.97821 8.12949 8.37103 8.72070 9.38989 10.86736 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002132 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.293536 B =13131.757762 C =13811.740653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.083 3.917 11 O -0.329 6.329 12 C 0.457 3.543 13 O -0.520 6.520 14 C -0.128 4.128 15 C 0.132 3.868 16 N -0.725 5.725 17 C 0.576 3.424 18 O -0.531 6.531 19 C -0.152 4.152 20 C -0.085 4.085 21 C -0.237 4.237 22 S 0.186 5.814 23 C -0.213 4.213 24 C 0.028 3.972 25 O -0.388 6.388 26 C 0.050 3.950 27 H 0.266 0.734 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.399 0.601 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 -3.403 -20.937 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.524 4.524 8 H 0.084 0.916 9 C 0.032 3.968 10 C 0.009 3.991 11 O -0.243 6.243 12 C 0.299 3.701 13 O -0.410 6.410 14 C -0.166 4.166 15 C 0.008 3.992 16 N -0.377 5.377 17 C 0.362 3.638 18 O -0.408 6.408 19 C -0.170 4.170 20 C -0.114 4.114 21 C -0.372 4.372 22 S 0.451 5.549 23 C -0.351 4.351 24 C -0.049 4.049 25 O -0.307 6.307 26 C -0.027 4.027 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.234 0.766 35 H 0.173 0.827 36 H 0.188 0.812 37 H 0.189 0.811 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.433 -3.282 -21.255 23.904 hybrid contribution -0.828 0.749 0.455 1.205 sum 9.605 -2.533 -20.800 23.050 Atomic orbital electron populations 1.69876 1.05941 1.27404 1.49351 1.24963 0.94938 0.99345 0.94400 0.86536 0.79576 0.82473 0.78786 1.20077 1.21237 1.20067 1.20496 0.93374 0.88304 1.50225 0.91644 1.21121 0.92672 0.94621 0.88411 1.23484 0.90955 0.98924 0.85723 1.86526 1.43489 1.80092 1.14195 1.23065 0.87935 0.73845 0.85233 1.90654 1.19497 1.45015 1.85855 1.21415 0.98516 1.06118 0.90591 1.21124 0.91503 1.03930 0.82602 1.45792 1.13309 1.73059 1.05566 1.17560 0.87279 0.76958 0.82042 1.90831 1.17596 1.47820 1.84549 1.20334 0.93040 1.09109 0.94525 1.21172 1.00728 0.99549 0.89955 1.25541 0.96368 1.11144 1.04108 1.83117 1.11176 1.66531 0.94067 1.25716 0.98221 1.06357 1.04823 1.24094 0.99210 0.97345 0.84247 1.89496 1.37258 1.77741 1.26196 1.23922 0.88524 0.94314 0.95944 0.92448 0.89615 0.94358 0.87358 0.87139 0.90087 0.90006 0.76621 0.82737 0.81231 0.81117 0.92872 0.90395 0.88203 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 11.31 55.43 0.63 -23.08 16 2 C 0.07 1.72 5.25 -17.82 -0.09 1.62 16 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.49 -12.52 7.92 -34.44 -0.27 -12.79 16 8 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.03 0.76 0.62 -154.58 -0.10 0.66 16 10 C 0.08 1.87 4.67 37.16 0.17 2.04 16 11 O -0.33 -6.80 9.82 -39.25 -0.39 -7.19 16 12 C 0.46 8.21 7.96 36.01 0.29 8.50 16 13 O -0.52 -10.80 15.73 -18.75 -0.29 -11.10 16 14 C -0.13 -1.54 5.93 -27.88 -0.17 -1.70 16 15 C 0.13 1.65 4.96 -4.04 -0.02 1.63 16 16 N -0.73 -7.35 5.52 -61.45 -0.34 -7.69 16 17 C 0.58 7.13 7.79 -12.63 -0.10 7.03 16 18 O -0.53 -8.76 16.80 5.24 0.09 -8.67 16 19 C -0.15 -1.46 5.98 -104.63 -0.63 -2.09 16 20 C -0.09 -0.75 10.10 -39.02 -0.39 -1.15 16 21 C -0.24 -1.54 11.12 28.86 0.32 -1.22 16 22 S 0.19 1.04 23.02 -107.50 -2.48 -1.44 16 23 C -0.21 -1.46 10.38 29.93 0.31 -1.15 16 24 C 0.03 0.59 8.35 37.61 0.31 0.90 16 25 O -0.39 -9.08 12.40 -35.23 -0.44 -9.52 16 26 C 0.05 1.16 7.91 37.61 0.30 1.46 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.09 2.16 7.21 -51.93 -0.37 1.79 16 29 H 0.04 0.80 8.04 -51.93 -0.42 0.39 16 30 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.40 2.67 6.97 -40.82 -0.28 2.38 16 35 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.17 0.73 7.01 -52.49 -0.37 0.36 16 38 H 0.05 1.00 8.03 -51.93 -0.42 0.58 16 39 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 40 H 0.10 2.51 7.36 -51.93 -0.38 2.12 16 41 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -32.61 369.96 -7.89 -40.50 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.16 Total: 3.55 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.06 Total: 3.76 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.29 Total: -30.77 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.03 Total: -36.47 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.48 Total: -1.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.61 -7.89 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772364640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.865 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds