Wall clock time and date at job start Tue Mar 31 2020 22:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47034 * 240.00143 * 3 2 1 5 5 H 1.48498 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46890 * 120.00250 * 3 2 1 7 7 C 1.37876 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00097 * 186.62246 * 7 2 1 9 9 C 1.50697 * 120.00185 * 6.62494 * 7 2 1 10 10 C 1.53006 * 113.00240 * 65.38991 * 9 7 2 11 11 O 1.45206 * 109.46750 * 53.52351 * 10 9 7 12 12 C 1.34229 * 116.99798 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00148 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99721 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47019 * 180.02562 * 14 12 11 16 16 N 1.46505 * 109.47058 * 179.97438 * 15 14 12 17 17 C 1.34770 * 119.99849 * 179.97438 * 16 15 14 18 18 O 1.21638 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.47192 * 119.99926 * 180.02562 * 17 16 15 20 20 C 1.44423 * 123.46137 * 179.73093 * 19 17 16 21 21 C 1.32770 * 113.08334 * 179.81093 * 20 19 17 22 22 S 1.75497 * 110.57578 * 0.43750 * 21 20 19 23 23 C 1.36007 * 123.45923 * 0.02816 * 19 17 16 24 24 C 1.54039 * 113.92935 * 197.32705 * 9 7 2 25 25 O 1.44179 * 85.51625 * 91.65892 * 24 9 7 26 26 C 1.44176 * 93.34078 * 24.19624 * 25 24 9 27 27 H 0.96994 * 119.99550 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47555 * 293.52477 * 10 9 7 29 29 H 1.09004 * 109.47031 * 173.51869 * 10 9 7 30 30 H 1.08998 * 109.47762 * 59.99986 * 14 12 11 31 31 H 1.09005 * 109.46914 * 300.00012 * 14 12 11 32 32 H 1.09005 * 109.46935 * 299.99567 * 15 14 12 33 33 H 1.08995 * 109.47285 * 59.99747 * 15 14 12 34 34 H 0.96999 * 120.00021 * 0.02562 * 16 15 14 35 35 H 1.08006 * 123.45735 * 0.02562 * 20 19 17 36 36 H 1.08002 * 124.71303 * 180.18338 * 21 20 19 37 37 H 1.08000 * 124.59206 * 0.02562 * 23 19 17 38 38 H 1.09001 * 113.86761 * 205.80517 * 24 9 7 39 39 H 1.09001 * 113.86061 * 337.50756 * 24 9 7 40 40 H 1.09004 * 113.86029 * 221.65997 * 26 25 24 41 41 H 1.08998 * 113.98406 * 89.96912 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 0.1073 9 6 1.2585 -2.4947 -0.1517 10 6 0.5843 -2.6421 -1.5172 11 8 1.5661 -2.4343 -2.5667 12 6 1.1334 -2.5303 -3.8337 13 8 -0.0274 -2.7792 -4.0584 14 6 2.0954 -2.3276 -4.9758 15 6 1.3522 -2.4895 -6.3034 16 7 2.2873 -2.2919 -7.4137 17 6 1.8528 -2.3881 -8.6858 18 8 0.6842 -2.6387 -8.9121 19 6 2.7924 -2.1901 -9.8014 20 6 2.4093 -2.2815 -11.1909 21 6 3.4191 -2.0625 -12.0247 22 16 4.8971 -1.7445 -11.1335 23 6 4.1118 -1.9081 -9.6295 24 6 2.0675 -3.7327 0.2794 25 8 1.4697 -3.5316 1.5759 26 6 0.3352 -2.8240 1.0365 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2106 -1.9023 -1.6118 29 1 0.1619 -3.6429 -1.6078 30 1 2.8941 -3.0667 -4.9137 31 1 2.5218 -1.3261 -4.9183 32 1 0.9255 -3.4909 -6.3611 33 1 0.5537 -1.7502 -6.3653 34 1 3.2193 -2.0925 -7.2333 35 1 1.4039 -2.5017 -11.5182 36 1 3.3425 -2.0817 -13.1019 37 1 4.5963 -1.8028 -8.6701 38 1 1.7569 -4.6552 -0.2111 39 1 3.1469 -3.5817 0.2632 40 1 0.0407 -1.9522 1.6209 41 1 -0.5055 -3.4672 0.7768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772364640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:56 Heat of formation + Delta-G solvation = -124.560156 kcal Electronic energy + Delta-G solvation = -26044.170110 eV Core-core repulsion = 22016.486016 eV Total energy + Delta-G solvation = -4027.684094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60535 -41.03960 -40.71324 -37.89387 -37.48391 -36.34374 -34.87578 -32.73762 -31.76358 -30.47421 -27.48305 -27.14469 -26.65837 -25.87802 -24.61687 -22.40521 -21.74029 -20.88731 -20.22109 -19.06709 -18.65162 -18.34539 -17.97963 -17.69661 -17.25259 -16.92781 -16.55114 -16.45005 -16.18914 -16.08675 -15.64705 -15.46080 -15.19599 -14.36749 -14.27077 -13.98374 -13.92589 -13.79613 -13.65598 -13.47265 -13.33930 -12.99850 -12.81627 -12.64461 -12.59216 -12.33284 -12.10646 -11.86707 -11.77265 -11.33269 -11.28291 -11.08070 -10.90036 -10.68930 -10.33637 -10.19293 -9.99108 -9.34774 -8.17248 -6.25630 -0.21592 0.63683 0.96284 0.97849 1.26310 1.44820 1.45443 1.52721 1.60045 2.28899 2.33888 2.42834 3.02070 3.23776 3.47596 3.80770 3.86181 3.95752 3.97202 4.15822 4.28211 4.31125 4.41799 4.46294 4.46623 4.50362 4.59694 4.72336 4.78146 4.83010 4.83903 5.14106 5.15840 5.21638 5.23525 5.27876 5.48320 5.52124 5.72770 5.73894 6.23949 6.43471 6.73118 6.85309 7.12236 7.40386 8.89507 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002132 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.293536 B =13131.757762 C =13811.740653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.017 3.983 10 C 0.094 3.906 11 O -0.336 6.336 12 C 0.451 3.549 13 O -0.555 6.555 14 C -0.110 4.110 15 C 0.140 3.860 16 N -0.707 5.707 17 C 0.573 3.427 18 O -0.586 6.586 19 C -0.185 4.185 20 C -0.115 4.115 21 C -0.235 4.235 22 S 0.248 5.752 23 C -0.204 4.204 24 C 0.038 3.962 25 O -0.403 6.403 26 C 0.052 3.948 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.419 0.581 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.789 -3.300 -22.280 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.016 3.984 10 C 0.020 3.980 11 O -0.251 6.251 12 C 0.296 3.704 13 O -0.446 6.446 14 C -0.148 4.148 15 C 0.015 3.985 16 N -0.360 5.360 17 C 0.360 3.640 18 O -0.468 6.468 19 C -0.203 4.203 20 C -0.143 4.143 21 C -0.370 4.370 22 S 0.513 5.487 23 C -0.343 4.343 24 C -0.038 4.038 25 O -0.323 6.323 26 C -0.025 4.025 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.167 0.833 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.258 0.742 35 H 0.158 0.842 36 H 0.210 0.790 37 H 0.216 0.784 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.039 -3.178 -22.601 26.796 hybrid contribution -1.844 0.701 0.799 2.128 sum 12.195 -2.477 -21.802 25.104 Atomic orbital electron populations 1.69996 1.07075 1.27678 1.50310 1.25640 0.95595 1.02199 0.94327 0.85683 0.78457 0.78933 0.79096 1.18865 1.21572 1.19874 1.20749 0.93376 0.89530 1.49899 0.91979 1.21190 0.93283 0.95097 0.88822 1.23122 0.90358 0.98349 0.86218 1.86520 1.42958 1.80586 1.15060 1.24194 0.88566 0.72350 0.85339 1.90646 1.21452 1.46517 1.86033 1.21461 0.97530 1.08734 0.87038 1.20838 0.91622 1.02148 0.83855 1.45541 1.13903 1.72243 1.04341 1.18071 0.87053 0.75799 0.83057 1.90795 1.20045 1.50583 1.85359 1.20138 0.93776 1.12700 0.93729 1.21183 1.01037 1.01657 0.90439 1.25861 0.96470 1.09406 1.05260 1.82991 1.09199 1.64272 0.92218 1.26110 0.97215 1.03778 1.07162 1.24205 0.99511 0.97306 0.82792 1.89468 1.37457 1.77757 1.27594 1.23830 0.89216 0.93942 0.95526 0.92845 0.93099 0.93189 0.83341 0.84680 0.91792 0.92711 0.74219 0.84246 0.79031 0.78356 0.90045 0.89369 0.90795 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.60 11.31 21.45 0.24 -49.36 16 2 C 0.02 1.16 5.25 84.65 0.44 1.60 16 3 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.50 -25.44 7.92 25.60 0.20 -25.24 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 9 C 0.02 0.78 0.62 -52.22 -0.03 0.74 16 10 C 0.09 4.23 4.67 71.98 0.34 4.56 16 11 O -0.34 -13.59 9.82 -51.41 -0.51 -14.10 16 12 C 0.45 15.85 7.96 71.24 0.57 16.42 16 13 O -0.55 -23.44 15.73 21.98 0.35 -23.10 16 14 C -0.11 -2.37 5.93 29.85 0.18 -2.20 16 15 C 0.14 3.44 4.96 86.38 0.43 3.87 16 16 N -0.71 -13.39 5.52 -466.58 -2.58 -15.97 16 17 C 0.57 14.28 7.79 86.60 0.67 14.95 16 18 O -0.59 -20.54 16.80 -4.15 -0.07 -20.61 16 19 C -0.19 -3.41 5.98 -19.87 -0.12 -3.53 16 20 C -0.11 -2.02 10.10 22.67 0.23 -1.79 16 21 C -0.24 -2.59 11.12 66.64 0.74 -1.85 16 22 S 0.25 1.89 23.02 -56.49 -1.30 0.59 16 23 C -0.20 -2.17 10.38 67.30 0.70 -1.48 16 24 C 0.04 1.54 8.35 72.28 0.60 2.14 16 25 O -0.40 -18.51 12.40 -148.98 -1.85 -20.35 16 26 C 0.05 2.42 7.91 72.28 0.57 2.99 16 27 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.05 2.64 7.21 -2.39 -0.02 2.62 16 29 H 0.05 2.08 8.04 -2.38 -0.02 2.07 16 30 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.14 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.06 1.81 8.10 -2.38 -0.02 1.79 16 33 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.42 4.27 6.97 -92.71 -0.65 3.62 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 36 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.20 0.80 7.01 -2.91 -0.02 0.78 16 38 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 39 H 0.09 3.34 8.09 -2.39 -0.02 3.32 16 40 H 0.07 3.80 7.36 -2.38 -0.02 3.78 16 41 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 Total: -1.00 -74.09 369.96 2.26 -71.82 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.42 Total: 16.52 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.52 Total: 11.21 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -2.34 Total: -65.33 kcal Atomic # 8 Polarization: -76.09 SS G_CDS: -2.08 Total: -78.16 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.30 Total: 0.59 kcal Total: -74.09 2.26 -71.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772364640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.736 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds