Wall clock time and date at job start Tue Mar 31 2020 22:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00066 * 2 1 4 4 C 1.52998 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47178 * 64.99735 * 4 3 2 6 6 C 1.34772 * 120.00278 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99573 * 359.97438 * 6 5 4 8 8 C 1.50691 * 120.00383 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47677 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00438 * 179.97438 * 9 8 6 11 11 C 1.39042 * 120.18591 * 0.02562 * 10 9 8 12 12 C 1.37907 * 120.06220 * 179.97438 * 11 10 9 13 13 C 1.38678 * 120.45773 * 359.97438 * 12 11 10 14 14 C 1.37705 * 120.38200 * 359.97438 * 13 12 11 15 15 C 1.39844 * 119.92125 * 0.02735 * 14 13 12 16 16 C 1.47187 * 120.22071 * 179.97438 * 15 14 13 17 17 O 1.21570 * 119.99633 * 179.97438 * 16 15 14 18 18 O 1.34798 * 120.00252 * 359.97438 * 16 15 14 19 19 C 1.34862 * 116.99914 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00027 * 359.97438 * 19 18 16 21 21 C 1.38789 * 119.99749 * 180.02562 * 19 18 16 22 22 N 1.31429 * 119.99698 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00217 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47223 * 89.99627 * 23 21 19 25 25 H 1.48500 * 109.47151 * 210.00017 * 23 21 19 26 26 H 1.48503 * 109.47059 * 329.99901 * 23 21 19 27 27 H 1.08998 * 109.46911 * 60.00716 * 1 2 3 28 28 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47704 * 300.00713 * 1 2 3 30 30 H 1.08999 * 109.47502 * 59.99174 * 3 2 1 31 31 H 1.09005 * 109.47155 * 299.99701 * 3 2 1 32 32 H 1.08998 * 109.47348 * 304.99758 * 4 3 2 33 33 H 1.08996 * 109.47466 * 184.99680 * 4 3 2 34 34 H 0.97004 * 119.99527 * 359.97438 * 5 4 3 35 35 H 1.08999 * 109.47527 * 59.99365 * 8 6 5 36 36 H 1.09006 * 109.47041 * 299.99333 * 8 6 5 37 37 H 1.07994 * 119.97328 * 359.95947 * 11 10 9 38 38 H 1.08002 * 119.77410 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.81383 * 180.02562 * 13 12 11 40 40 H 1.08003 * 120.04054 * 179.74585 * 14 13 12 41 41 H 0.96998 * 120.00118 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2894 0.3550 -1.4733 7 8 6.1054 0.6814 -0.6376 8 6 5.7433 -0.2830 -2.7608 9 16 7.5477 -0.4260 -2.7601 10 6 7.7954 -1.1816 -4.3325 11 6 6.7070 -1.4754 -5.1462 12 6 6.9039 -2.0663 -6.3766 13 6 8.1843 -2.3717 -6.8130 14 6 9.2756 -2.0879 -6.0226 15 6 9.0943 -1.4888 -4.7720 16 6 10.2561 -1.1831 -3.9216 17 8 10.0938 -0.6618 -2.8354 18 8 11.4999 -1.4811 -4.3471 19 6 12.5198 -1.1753 -3.5194 20 1 12.3200 -0.7124 -2.5643 21 6 13.8263 -1.4545 -3.8954 22 7 14.8203 -1.1561 -3.0890 23 14 14.1721 -2.2532 -5.5483 24 1 14.3642 -1.1994 -6.5767 25 1 15.4018 -3.0799 -5.4510 26 1 13.0251 -3.1152 -5.9311 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1765 0.0902 34 1 3.3239 0.3026 -1.9191 35 1 5.4285 0.3336 -3.6027 36 1 5.3000 -1.2747 -2.8510 37 1 5.7064 -1.2408 -4.8144 38 1 6.0550 -2.2928 -7.0048 39 1 8.3265 -2.8340 -7.7786 40 1 10.2701 -2.3318 -6.3661 41 1 15.7334 -1.3509 -3.3519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020833503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:18 Heat of formation + Delta-G solvation = -120.104653 kcal Electronic energy + Delta-G solvation = -25668.534748 eV Core-core repulsion = 21641.043859 eV Total energy + Delta-G solvation = -4027.490889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82396 -39.57727 -38.34916 -38.17602 -35.37395 -34.96080 -32.37487 -31.76138 -30.99745 -30.69393 -28.90282 -26.70111 -25.85927 -23.56050 -22.98264 -22.51922 -21.06052 -20.09074 -18.16040 -17.81576 -17.22665 -17.07172 -17.00015 -16.55839 -15.88514 -15.68323 -15.47741 -15.08326 -14.78441 -14.75839 -14.69865 -14.05716 -13.91304 -13.78106 -13.65756 -13.12905 -12.88518 -12.66456 -12.48366 -12.34923 -12.25140 -12.21189 -11.71123 -11.49108 -11.28700 -11.05821 -10.54560 -10.42705 -10.30327 -10.18718 -10.02074 -9.71601 -9.57517 -9.32784 -8.83991 -8.79029 -8.69584 -7.07903 -6.39939 -4.10315 1.03135 1.38597 1.66647 2.49337 2.61916 2.98940 3.15253 3.22387 3.23053 3.32808 3.36901 4.08884 4.13371 4.22962 4.39192 4.56102 4.66826 4.78022 4.83976 4.86548 4.90003 4.90774 5.05695 5.12496 5.13524 5.15839 5.26617 5.28821 5.49298 5.53328 5.71059 5.85378 6.13284 6.14294 6.39928 6.53128 6.56969 6.62715 6.96081 7.21082 7.71037 8.01726 8.03380 8.60075 8.97269 9.64606 10.67835 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018885 B = 0.002402 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.291523 B =11655.315996 C =13001.946393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.726 5.726 6 C 0.534 3.466 7 O -0.515 6.515 8 C -0.219 4.219 9 S 0.098 5.902 10 C -0.073 4.073 11 C -0.152 4.152 12 C -0.084 4.084 13 C -0.143 4.143 14 C -0.056 4.056 15 C -0.082 4.082 16 C 0.437 3.563 17 O -0.508 6.508 18 O -0.240 6.240 19 C -0.371 4.371 20 H 0.113 0.887 21 C 0.065 3.935 22 N -0.866 5.866 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.403 0.597 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.033 1.263 -3.406 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.381 5.381 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.368 4.368 9 S 0.344 5.656 10 C -0.188 4.188 11 C -0.176 4.176 12 C -0.105 4.105 13 C -0.164 4.164 14 C -0.075 4.075 15 C -0.090 4.090 16 C 0.285 3.715 17 O -0.405 6.405 18 O -0.148 6.148 19 C -0.447 4.447 20 H 0.131 0.869 21 C -0.140 4.140 22 N -0.505 5.505 23 Si 0.729 3.271 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.183 1.183 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.237 0.763 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.389 1.900 -1.422 27.491 hybrid contribution -1.215 -0.652 -2.082 2.497 sum -28.604 1.248 -3.504 28.844 Atomic orbital electron populations 1.22772 0.80694 1.03052 1.00068 1.87948 1.19966 1.27441 1.95447 1.22831 0.93119 0.85440 1.01477 1.21393 0.91702 0.99496 0.87611 1.45810 1.07324 1.64146 1.20798 1.19726 0.82259 0.78541 0.87575 1.90797 1.52382 1.49787 1.46028 1.24382 1.07476 1.05190 0.99793 1.88387 0.93359 1.71418 1.12403 1.22453 0.95001 1.01060 1.00294 1.20999 0.97007 1.03984 0.95652 1.21109 0.97194 0.96853 0.95298 1.21068 0.92327 1.02615 1.00396 1.21498 1.00024 0.93983 0.92037 1.18952 0.90112 1.04236 0.95703 1.20365 0.83608 0.81576 0.85948 1.90607 1.83991 1.43402 1.22460 1.83535 1.14232 1.69968 1.47055 1.20747 0.82673 1.40188 1.01051 0.86919 1.24574 0.93778 0.96477 0.99142 1.69600 0.99641 1.44818 1.36432 0.86229 0.78367 0.79877 0.82597 1.19713 1.20632 1.18275 0.93959 0.89426 0.93922 0.91414 0.92435 0.90327 0.89653 0.76297 0.87096 0.87010 0.85564 0.85806 0.85559 0.84289 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.89 10.65 -35.23 -0.38 -3.26 16 3 C 0.05 0.27 6.07 37.16 0.23 0.50 16 4 C 0.12 1.01 6.06 -4.04 -0.02 0.99 16 5 N -0.73 -6.68 5.50 -60.30 -0.33 -7.01 16 6 C 0.53 7.07 7.85 -10.99 -0.09 6.98 16 7 O -0.52 -9.32 15.86 5.55 0.09 -9.23 16 8 C -0.22 -2.61 4.65 36.00 0.17 -2.45 16 9 S 0.10 1.81 18.11 -107.50 -1.95 -0.14 16 10 C -0.07 -1.27 6.16 -38.42 -0.24 -1.51 16 11 C -0.15 -1.96 9.17 -39.40 -0.36 -2.32 16 12 C -0.08 -0.98 10.02 -39.54 -0.40 -1.37 16 13 C -0.14 -1.85 10.02 -39.61 -0.40 -2.24 16 14 C -0.06 -0.93 9.61 -39.18 -0.38 -1.31 16 15 C -0.08 -1.64 5.89 -104.80 -0.62 -2.26 16 16 C 0.44 11.02 7.81 34.36 0.27 11.29 16 17 O -0.51 -14.04 13.02 -19.32 -0.25 -14.29 16 18 O -0.24 -6.48 7.82 -21.84 -0.17 -6.65 16 19 C -0.37 -11.18 10.11 30.94 0.31 -10.87 16 20 H 0.11 3.75 7.09 -52.49 -0.37 3.38 16 21 C 0.06 1.87 5.49 -17.52 -0.10 1.77 16 22 N -0.87 -25.76 13.96 55.49 0.77 -24.98 16 23 Si 0.90 21.32 28.62 -169.99 -4.86 16.45 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 27 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.40 2.60 8.47 -40.82 -0.35 2.26 16 35 H 0.11 1.03 7.54 -51.92 -0.39 0.64 16 36 H 0.11 1.08 7.54 -51.91 -0.39 0.69 16 37 H 0.13 1.21 5.50 -52.49 -0.29 0.92 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.14 2.35 7.61 -52.48 -0.40 1.95 16 41 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -37.07 369.96 -7.14 -44.21 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.13 Total: 0.88 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.51 Total: -1.55 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.44 Total: -31.99 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.71 Total: -33.44 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.45 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.95 Total: -0.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.07 -7.14 -44.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020833503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.896 kcal (2) G-P(sol) polarization free energy of solvation -37.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds