Wall clock time and date at job start Tue Mar 31 2020 22:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34762 * 116.99958 * 2 1 4 4 O 1.21528 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.47311 * 119.99866 * 179.97438 * 3 2 1 6 6 C 1.41648 * 120.26681 * 359.97251 * 5 3 2 7 7 C 1.35955 * 119.00269 * 180.02562 * 6 5 3 8 8 N 1.48026 * 120.24539 * 179.97438 * 7 6 5 9 9 O 1.21798 * 119.99966 * 0.02562 * 8 7 6 10 10 O 1.21791 * 120.00036 * 180.02562 * 8 7 6 11 11 C 1.40778 * 119.50472 * 359.76444 * 7 6 5 12 12 O 1.21949 * 119.73959 * 180.23972 * 11 7 6 13 13 N 1.34533 * 120.51471 * 0.51891 * 11 7 6 14 14 C 1.46506 * 119.47257 * 179.73075 * 13 11 7 15 15 C 1.50703 * 109.46877 * 269.72289 * 14 13 11 16 16 O 1.21281 * 119.99990 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00214 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.47142 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00013 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99843 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00058 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47011 * 120.00419 * 23 21 19 26 26 H 1.48499 * 109.47134 * 240.00040 * 23 21 19 27 27 C 1.34565 * 121.05783 * 359.44653 * 13 11 7 28 28 H 1.08995 * 109.47372 * 300.00270 * 1 2 3 29 29 H 1.08998 * 109.47070 * 60.00367 * 1 2 3 30 30 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.49862 * 0.02562 * 6 5 3 32 32 H 1.09000 * 109.46803 * 29.71767 * 14 13 11 33 33 H 1.09000 * 109.47214 * 149.72561 * 14 13 11 34 34 H 0.97000 * 119.99813 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.47383 * 300.00029 * 18 17 15 36 36 H 1.09000 * 109.47008 * 60.00245 * 18 17 15 37 37 H 0.97000 * 119.99660 * 179.97438 * 22 21 19 38 38 H 1.07998 * 119.77933 * 180.27845 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5349 1.2778 0.0006 6 6 4.3119 0.0935 0.0017 7 6 5.6677 0.1945 0.0027 8 7 6.5063 -1.0253 0.0045 9 8 5.9821 -2.1247 0.0046 10 8 7.7205 -0.9295 0.0059 11 6 6.2680 1.4679 -0.0024 12 8 7.4838 1.5635 -0.0059 13 7 5.5110 2.5800 0.0022 14 6 6.1598 3.8936 0.0028 15 6 6.3806 4.3442 1.4238 16 8 6.0310 3.6374 2.3453 17 7 6.9676 5.5320 1.6706 18 6 7.1828 5.9698 3.0519 19 6 7.8512 7.3205 3.0525 20 1 8.0913 7.8046 2.1174 21 6 8.1552 7.9387 4.2468 22 7 7.8624 7.3494 5.3855 23 14 8.9831 9.6132 4.2475 24 1 9.2036 10.0570 2.8476 25 1 8.1147 10.5944 4.9464 26 1 10.2885 9.5197 4.9491 27 6 4.1675 2.5053 0.0007 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8345 -0.8752 0.0018 32 1 7.1193 3.8250 -0.5099 33 1 5.5233 4.6134 -0.5119 34 1 7.2476 6.0970 0.9336 35 1 6.2235 6.0385 3.5650 36 1 7.8192 5.2497 3.5663 37 1 8.0767 7.7842 6.2257 38 1 3.5798 3.4114 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041744195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:06 Heat of formation + Delta-G solvation = -111.833879 kcal Electronic energy + Delta-G solvation = -28863.161537 eV Core-core repulsion = 24289.736082 eV Total energy + Delta-G solvation = -4573.425456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.79019 -41.69114 -40.73806 -39.06762 -37.87699 -36.87371 -36.35599 -35.54346 -34.50989 -32.58945 -31.61860 -29.78278 -28.21264 -27.10329 -27.07118 -24.72832 -24.05517 -22.69748 -21.91292 -20.40381 -19.74459 -19.08611 -18.16076 -18.00202 -17.88050 -17.63952 -17.48056 -16.86471 -16.79874 -16.63844 -16.19835 -15.46058 -15.13448 -15.08283 -14.62443 -14.25866 -13.87856 -13.86110 -13.57363 -13.23942 -12.92572 -12.56433 -12.55786 -12.16254 -11.88480 -11.54030 -11.50602 -11.46087 -11.28247 -11.11770 -11.09170 -11.04180 -11.02200 -10.64713 -10.46633 -9.68120 -9.54113 -9.02443 -8.93428 -8.22311 -6.30256 -4.38780 -0.61676 0.34664 0.96346 1.01437 1.71756 2.03812 2.22279 2.74632 2.80322 3.15549 3.22655 3.25338 3.53529 3.57352 3.79369 3.82886 3.94348 4.22489 4.35133 4.59618 4.67094 4.69812 4.78396 4.79235 4.91755 5.01917 5.06635 5.13160 5.34827 5.78226 5.94925 6.27861 7.01761 7.02154 7.11155 7.16548 7.28932 7.44569 7.69426 7.78441 8.22653 8.46923 8.73263 9.28241 10.79793 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.002779 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.271914 B =10074.119632 C =11642.488687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.353 6.353 3 C 0.537 3.463 4 O -0.504 6.504 5 C -0.263 4.263 6 C 0.121 3.879 7 C -0.187 4.187 8 N 0.052 4.948 9 O -0.181 6.181 10 O -0.122 6.122 11 C 0.543 3.457 12 O -0.463 6.463 13 N -0.457 5.457 14 C 0.057 3.943 15 C 0.485 3.515 16 O -0.543 6.543 17 N -0.696 5.696 18 C 0.249 3.751 19 C -0.548 4.548 20 H 0.066 0.934 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.295 3.705 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.178 0.822 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.395 0.605 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.360 -11.128 -16.036 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.269 6.269 3 C 0.381 3.619 4 O -0.393 6.393 5 C -0.270 4.270 6 C 0.098 3.902 7 C -0.277 4.277 8 N 0.571 4.429 9 O -0.388 6.388 10 O -0.346 6.346 11 C 0.339 3.661 12 O -0.336 6.336 13 N -0.161 5.161 14 C -0.067 4.067 15 C 0.267 3.733 16 O -0.421 6.421 17 N -0.344 5.344 18 C 0.129 3.871 19 C -0.586 4.586 20 H 0.084 0.916 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.733 3.267 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.207 1.207 27 C 0.155 3.845 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.195 0.805 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.229 0.771 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.318 -10.678 -15.131 23.409 hybrid contribution 0.486 0.952 -0.084 1.072 sum -13.832 -9.726 -15.215 22.747 Atomic orbital electron populations 1.23368 0.74872 1.04221 1.03019 1.86513 1.24331 1.31747 1.84314 1.19917 0.87105 0.82031 0.72842 1.90913 1.66170 1.35701 1.46521 1.18153 0.91388 0.91640 1.25816 1.21620 0.90683 1.01025 0.76859 1.21286 0.91328 0.86978 1.28071 1.42686 1.01383 1.00926 0.97896 1.94520 1.76651 1.12004 1.55603 1.94658 0.94662 1.93479 1.51807 1.15963 0.87742 0.83041 0.79384 1.91147 1.11199 1.85404 1.45830 1.44996 1.05963 1.09789 1.55329 1.22399 1.03309 0.81159 0.99828 1.20205 0.80432 0.83326 0.89378 1.90762 1.51924 1.54192 1.45242 1.46415 1.57771 1.17627 1.12609 1.19244 0.97364 0.95060 0.75394 1.21197 1.41449 1.02709 0.93245 0.91636 1.24961 0.95396 0.98450 0.95149 1.69976 1.45960 1.38464 0.97610 0.86318 0.79158 0.82891 0.78305 1.19566 1.20720 1.20666 1.22825 0.83395 1.00474 0.77817 0.91380 0.91500 0.87570 0.80460 0.84009 0.84623 0.77136 0.95135 0.95127 0.92297 0.78290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.71 9.87 -40.66 -0.40 -3.11 16 3 C 0.54 4.82 7.89 34.42 0.27 5.09 16 4 O -0.50 -5.46 16.11 -19.29 -0.31 -5.77 16 5 C -0.26 -2.32 5.88 -104.96 -0.62 -2.94 16 6 C 0.12 1.17 9.16 -39.10 -0.36 0.82 16 7 C -0.19 -2.51 6.87 -79.80 -0.55 -3.06 16 8 N 0.05 0.83 4.45 34.03 0.15 0.98 16 9 O -0.18 -2.68 18.46 -29.46 -0.54 -3.23 16 10 O -0.12 -2.21 17.42 -36.42 -0.63 -2.85 16 11 C 0.54 7.89 7.39 -15.41 -0.11 7.78 16 12 O -0.46 -8.34 14.73 -16.90 -0.25 -8.59 16 13 N -0.46 -5.10 2.04 -120.58 -0.25 -5.35 16 14 C 0.06 0.58 5.79 -5.19 -0.03 0.55 16 15 C 0.48 8.11 7.89 -10.99 -0.09 8.02 16 16 O -0.54 -11.69 16.43 5.56 0.09 -11.60 16 17 N -0.70 -12.60 5.55 -61.47 -0.34 -12.94 16 18 C 0.25 6.13 5.43 -5.19 -0.03 6.10 16 19 C -0.55 -13.96 9.28 -34.44 -0.32 -14.28 16 20 H 0.07 1.54 7.60 -52.49 -0.40 1.14 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.88 -25.17 13.29 55.43 0.74 -24.43 16 23 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.29 2.53 9.85 -16.41 -0.16 2.36 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.18 1.35 7.24 -52.49 -0.38 0.97 16 32 H 0.14 1.33 7.36 -51.93 -0.38 0.95 16 33 H 0.14 0.65 8.00 -51.93 -0.42 0.23 16 34 H 0.40 5.72 8.32 -40.82 -0.34 5.38 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.20 1.12 7.56 -52.49 -0.40 0.73 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -37.47 355.72 -5.99 -43.46 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.56 Total: -0.29 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -1.02 Total: 13.32 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.30 Total: -41.74 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -2.05 Total: -35.14 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.47 -5.99 -43.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041744195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.377 kcal (2) G-P(sol) polarization free energy of solvation -37.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds