Wall clock time and date at job start Tue Mar 31 2020 22:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34762 * 116.99958 * 2 1 4 4 O 1.21528 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.47311 * 119.99866 * 179.97438 * 3 2 1 6 6 C 1.41648 * 120.26681 * 359.97251 * 5 3 2 7 7 C 1.35955 * 119.00269 * 180.02562 * 6 5 3 8 8 N 1.48026 * 120.24539 * 179.97438 * 7 6 5 9 9 O 1.21798 * 119.99966 * 0.02562 * 8 7 6 10 10 O 1.21791 * 120.00036 * 180.02562 * 8 7 6 11 11 C 1.40778 * 119.50472 * 359.76444 * 7 6 5 12 12 O 1.21949 * 119.73959 * 180.23972 * 11 7 6 13 13 N 1.34533 * 120.51471 * 0.51891 * 11 7 6 14 14 C 1.46506 * 119.47257 * 179.73075 * 13 11 7 15 15 C 1.50703 * 109.46877 * 269.72289 * 14 13 11 16 16 O 1.21281 * 119.99990 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00069 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00214 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.47142 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00013 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99843 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00058 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47112 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47011 * 120.00419 * 23 21 19 26 26 H 1.48499 * 109.47134 * 240.00040 * 23 21 19 27 27 C 1.34565 * 121.05783 * 359.44653 * 13 11 7 28 28 H 1.08995 * 109.47372 * 300.00270 * 1 2 3 29 29 H 1.08998 * 109.47070 * 60.00367 * 1 2 3 30 30 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.49862 * 0.02562 * 6 5 3 32 32 H 1.09000 * 109.46803 * 29.71767 * 14 13 11 33 33 H 1.09000 * 109.47214 * 149.72561 * 14 13 11 34 34 H 0.97000 * 119.99813 * 0.02562 * 17 15 14 35 35 H 1.08997 * 109.47383 * 300.00029 * 18 17 15 36 36 H 1.09000 * 109.47008 * 60.00245 * 18 17 15 37 37 H 0.97000 * 119.99660 * 179.97438 * 22 21 19 38 38 H 1.07998 * 119.77933 * 180.27845 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5349 1.2778 0.0006 6 6 4.3119 0.0935 0.0017 7 6 5.6677 0.1945 0.0027 8 7 6.5063 -1.0253 0.0045 9 8 5.9821 -2.1247 0.0046 10 8 7.7205 -0.9295 0.0059 11 6 6.2680 1.4679 -0.0024 12 8 7.4838 1.5635 -0.0059 13 7 5.5110 2.5800 0.0022 14 6 6.1598 3.8936 0.0028 15 6 6.3806 4.3442 1.4238 16 8 6.0310 3.6374 2.3453 17 7 6.9676 5.5320 1.6706 18 6 7.1828 5.9698 3.0519 19 6 7.8512 7.3205 3.0525 20 1 8.0913 7.8046 2.1174 21 6 8.1552 7.9387 4.2468 22 7 7.8624 7.3494 5.3855 23 14 8.9831 9.6132 4.2475 24 1 9.2036 10.0570 2.8476 25 1 8.1147 10.5944 4.9464 26 1 10.2885 9.5197 4.9491 27 6 4.1675 2.5053 0.0007 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8345 -0.8752 0.0018 32 1 7.1193 3.8250 -0.5099 33 1 5.5233 4.6134 -0.5119 34 1 7.2476 6.0970 0.9336 35 1 6.2235 6.0385 3.5650 36 1 7.8192 5.2497 3.5663 37 1 8.0767 7.7842 6.2257 38 1 3.5798 3.4114 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041744195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:05 Heat of formation + Delta-G solvation = -138.836039 kcal Electronic energy + Delta-G solvation = -28864.332439 eV Core-core repulsion = 24289.736082 eV Total energy + Delta-G solvation = -4574.596357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.80307 -42.79377 -41.46111 -40.49222 -38.89467 -37.62278 -37.47194 -36.59742 -36.17216 -34.47054 -32.54958 -30.97668 -29.02903 -28.50928 -28.09090 -25.58768 -25.34344 -24.27436 -22.81220 -21.78066 -20.76587 -20.14606 -19.48193 -18.99877 -18.78896 -18.69231 -18.47997 -18.02339 -17.59922 -17.57286 -17.45844 -16.76296 -16.71968 -16.50272 -15.75495 -15.43122 -14.78817 -14.60877 -14.46939 -14.38891 -14.31550 -14.09600 -13.54286 -13.33907 -12.99928 -12.94918 -12.78505 -12.74623 -12.58214 -12.44662 -12.28249 -12.24344 -11.89798 -11.81318 -11.76430 -11.49955 -11.09369 -10.86464 -10.02782 -9.99769 -8.32714 -6.49167 -1.53989 -0.47356 -0.15637 0.00579 0.79975 1.20000 1.42199 1.43460 1.44479 1.53222 1.56765 1.87994 2.23576 2.43010 2.70490 2.97781 3.03547 3.06668 3.17397 3.55833 3.65590 3.86204 3.95233 4.04480 4.19779 4.35980 4.42964 4.53173 4.81277 4.98741 5.03711 5.13409 5.17388 5.22142 5.36512 5.57368 5.79130 6.07390 6.47728 6.49982 6.59674 6.67199 7.16435 7.30321 8.79480 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.002779 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.271914 B =10074.119632 C =11642.488687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.544 3.456 4 O -0.520 6.520 5 C -0.256 4.256 6 C 0.152 3.848 7 C -0.218 4.218 8 N 0.056 4.944 9 O -0.145 6.145 10 O -0.208 6.208 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.458 5.458 14 C 0.071 3.929 15 C 0.481 3.519 16 O -0.596 6.596 17 N -0.692 5.692 18 C 0.266 3.734 19 C -0.553 4.553 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.932 5.932 23 Si 0.983 3.017 24 H -0.249 1.249 25 H -0.279 1.279 26 H -0.284 1.284 27 C 0.308 3.692 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.203 0.797 32 H 0.154 0.846 33 H 0.207 0.793 34 H 0.416 0.584 35 H -0.003 1.003 36 H -0.018 1.018 37 H 0.268 0.732 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 -9.826 -18.436 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.389 3.611 4 O -0.411 6.411 5 C -0.263 4.263 6 C 0.129 3.871 7 C -0.308 4.308 8 N 0.568 4.432 9 O -0.365 6.365 10 O -0.411 6.411 11 C 0.335 3.665 12 O -0.389 6.389 13 N -0.161 5.161 14 C -0.051 4.051 15 C 0.267 3.733 16 O -0.478 6.478 17 N -0.342 5.342 18 C 0.144 3.856 19 C -0.591 4.591 20 H 0.108 0.892 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.806 3.194 24 H -0.173 1.173 25 H -0.205 1.205 26 H -0.210 1.210 27 C 0.170 3.830 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.220 0.780 32 H 0.172 0.828 33 H 0.224 0.776 34 H 0.254 0.746 35 H 0.015 0.985 36 H 0.000 1.000 37 H 0.077 0.923 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -16.594 -9.308 -17.604 25.921 hybrid contribution 0.882 0.417 0.668 1.182 sum -15.713 -8.891 -16.936 24.754 Atomic orbital electron populations 1.23673 0.73208 1.06164 1.03146 1.86509 1.25909 1.30820 1.83766 1.19774 0.86732 0.82250 0.72361 1.90919 1.66412 1.36350 1.47415 1.18263 0.91630 0.91412 1.24962 1.21901 0.88993 1.02642 0.73563 1.21240 0.92032 0.85628 1.31874 1.42953 1.01357 1.01696 0.97170 1.94450 1.76264 1.12918 1.52842 1.94678 0.95922 1.93921 1.56562 1.16252 0.87462 0.84209 0.78609 1.91117 1.13219 1.86187 1.48412 1.44947 1.06795 1.09222 1.55093 1.22559 1.05995 0.81770 0.94813 1.21282 0.78306 0.81816 0.91913 1.90741 1.53690 1.55374 1.48001 1.46030 1.58507 1.18965 1.10653 1.18590 0.94547 0.94113 0.78393 1.21648 1.40553 1.02721 0.94197 0.89238 1.26055 0.96059 1.02806 0.94749 1.70139 1.47765 1.40646 0.98498 0.85131 0.77452 0.77507 0.79268 1.17263 1.20463 1.21009 1.23490 0.82303 1.01989 0.75236 0.91711 0.90945 0.84841 0.77997 0.82801 0.77641 0.74645 0.98537 1.00024 0.92301 0.74507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.57 113.37 1.20 1.41 16 2 O -0.35 -4.23 9.87 -56.73 -0.56 -4.79 16 3 C 0.54 7.92 7.89 70.21 0.55 8.47 16 4 O -0.52 -9.50 16.11 19.75 0.32 -9.18 16 5 C -0.26 -3.71 5.88 -20.09 -0.12 -3.83 16 6 C 0.15 2.59 9.16 22.58 0.21 2.80 16 7 C -0.22 -5.77 6.87 36.46 0.25 -5.52 16 8 N 0.06 1.81 4.45 -46.24 -0.21 1.60 16 9 O -0.15 -4.21 18.46 18.89 0.35 -3.86 16 10 O -0.21 -8.14 17.42 25.55 0.45 -7.70 16 11 C 0.54 15.59 7.39 84.90 0.63 16.22 16 12 O -0.51 -19.35 14.73 15.76 0.23 -19.12 16 13 N -0.46 -9.22 2.04 -653.64 -1.33 -10.55 16 14 C 0.07 1.23 5.79 85.63 0.50 1.72 16 15 C 0.48 15.76 7.89 87.66 0.69 16.45 16 16 O -0.60 -26.27 16.43 -3.03 -0.05 -26.32 16 17 N -0.69 -24.70 5.55 -466.79 -2.59 -27.29 16 18 C 0.27 13.57 5.43 85.64 0.46 14.04 16 19 C -0.55 -28.20 9.28 25.60 0.24 -27.96 16 20 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 21 C 0.00 0.16 5.46 84.65 0.46 0.62 16 22 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 23 Si 0.98 40.77 29.54 68.60 2.03 42.80 16 24 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 25 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.31 4.20 9.85 84.24 0.83 5.03 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.20 2.41 7.24 -2.91 -0.02 2.39 16 32 H 0.15 2.49 7.36 -2.39 -0.02 2.48 16 33 H 0.21 0.69 8.00 -2.39 -0.02 0.67 16 34 H 0.42 11.16 8.32 -92.71 -0.77 10.38 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.24 1.43 7.56 -2.91 -0.02 1.41 16 Total: -1.00 -90.09 355.72 5.20 -84.89 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 0.38 Total: 4.59 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 5.90 Total: 29.45 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -3.84 Total: -90.77 kcal Atomic # 8 Polarization: -71.70 SS G_CDS: 0.73 Total: -70.97 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -90.09 5.20 -84.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041744195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.942 kcal (2) G-P(sol) polarization free energy of solvation -90.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds