Wall clock time and date at job start Tue Mar 31 2020 22:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34229 * 116.99995 * 2 1 4 4 O 1.20828 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99937 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47094 * 180.02562 * 5 3 2 7 7 O 1.42905 * 109.46965 * 179.97438 * 6 5 3 8 8 C 1.35973 * 116.99645 * 179.97438 * 7 6 5 9 9 C 1.38724 * 119.98385 * 0.25301 * 8 7 6 10 10 C 1.38092 * 120.00868 * 180.25539 * 9 8 7 11 11 C 1.38847 * 119.98312 * 359.49314 * 10 9 8 12 12 N 1.40116 * 120.01049 * 180.27723 * 11 10 9 13 13 C 1.34781 * 119.99845 * 144.91011 * 12 11 10 14 14 O 1.21292 * 119.99910 * 4.61992 * 13 12 11 15 15 C 1.50697 * 120.00087 * 184.62318 * 13 12 11 16 16 S 1.80990 * 109.47383 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00227 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99877 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00284 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99697 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99766 * 21 19 17 23 23 H 1.48497 * 109.46700 * 210.00008 * 21 19 17 24 24 H 1.48507 * 109.46981 * 329.99744 * 21 19 17 25 25 C 1.38838 * 119.97638 * 0.25301 * 11 10 9 26 26 C 1.38096 * 119.98003 * 0.02562 * 25 11 10 27 27 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46923 * 300.00525 * 1 2 3 29 29 H 1.08998 * 109.46850 * 60.00038 * 1 2 3 30 30 H 1.08996 * 109.47069 * 59.99736 * 5 3 2 31 31 H 1.09000 * 109.47204 * 299.99755 * 5 3 2 32 32 H 1.08996 * 109.47486 * 59.99859 * 6 5 3 33 33 H 1.09000 * 109.46787 * 299.99878 * 6 5 3 34 34 H 1.07995 * 119.99489 * 359.97438 * 9 8 7 35 35 H 1.07993 * 120.00473 * 179.77103 * 10 9 8 36 36 H 0.96999 * 119.99983 * 324.91100 * 12 11 10 37 37 H 1.09004 * 109.46692 * 300.00092 * 15 13 12 38 38 H 1.09003 * 109.47248 * 59.99528 * 15 13 12 39 39 H 0.97000 * 120.00208 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.01518 * 180.02562 * 25 11 10 41 41 H 1.08004 * 119.98682 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7421 0.0011 7 8 5.4273 2.8168 0.0023 8 6 5.9803 4.0590 0.0023 9 6 5.1646 5.1810 0.0066 10 6 5.7256 6.4428 0.0013 11 6 7.1065 6.5882 0.0024 12 7 7.6764 7.8683 0.0029 13 6 8.8225 8.0954 0.6748 14 8 9.4049 7.1752 1.2088 15 6 9.3802 9.4926 0.7626 16 16 10.9140 9.4707 1.7232 17 6 11.3350 11.1807 1.6666 18 1 10.6988 11.8763 1.1396 19 6 12.4848 11.6336 2.2986 20 7 13.2605 10.7858 2.9405 21 14 12.9315 13.4465 2.2379 22 1 12.3184 14.1464 3.3953 23 1 14.4079 13.5946 2.2952 24 1 12.4231 14.0396 0.9749 25 6 7.9223 5.4648 0.0034 26 6 7.3599 4.2036 0.0029 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7805 -0.8891 31 1 3.9558 0.7809 0.8908 32 1 3.6102 3.2360 0.8910 33 1 3.6108 3.2363 -0.8889 34 1 4.0906 5.0677 0.0094 35 1 5.0905 7.3163 0.0009 36 1 7.2460 8.5909 -0.4803 37 1 9.5848 9.8658 -0.2409 38 1 8.6550 10.1432 1.2514 39 1 14.0638 11.1024 3.3825 40 1 8.9964 5.5772 0.0047 41 1 7.9944 3.3296 0.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064464644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:08 Heat of formation + Delta-G solvation = -130.459895 kcal Electronic energy + Delta-G solvation = -24740.575187 eV Core-core repulsion = 20712.635262 eV Total energy + Delta-G solvation = -4027.939926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10016 -40.52738 -39.48952 -37.47361 -37.01809 -34.32652 -32.73868 -32.45975 -31.08117 -30.10660 -28.46688 -27.67232 -25.51855 -25.17813 -22.86830 -22.33699 -21.22331 -20.22504 -18.81916 -18.09994 -17.86019 -17.39078 -17.31752 -16.81701 -16.50919 -16.22119 -15.81663 -15.11019 -14.83053 -14.52823 -14.28779 -14.17797 -13.97156 -13.77468 -13.43889 -13.38984 -13.22269 -12.91319 -12.67162 -12.53808 -12.49178 -12.13870 -11.99672 -11.40427 -11.26464 -11.12345 -11.08656 -11.05810 -10.97384 -10.79327 -9.87046 -9.85632 -9.49110 -9.09373 -9.01542 -8.29501 -7.75001 -6.54505 -6.24720 -3.96036 1.26683 1.31436 1.59951 1.90033 2.88639 2.94158 3.11666 3.20917 3.26082 3.29758 3.61590 3.76040 4.01521 4.17066 4.35260 4.44808 4.56669 4.64755 4.70058 4.75784 4.86415 4.96971 5.00125 5.10129 5.10803 5.12476 5.25818 5.37601 5.51617 5.64344 5.78251 5.79729 5.88564 5.94540 6.06165 6.19582 6.35600 6.49847 6.86452 7.11171 7.24473 7.52504 7.56994 8.32093 8.42111 9.20754 10.82699 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.001491 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.983819 B =18773.392116 C =19057.144576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.506 6.506 5 C -0.115 4.115 6 C 0.071 3.929 7 O -0.316 6.316 8 C 0.106 3.894 9 C -0.188 4.188 10 C -0.110 4.110 11 C 0.122 3.878 12 N -0.680 5.680 13 C 0.532 3.468 14 O -0.498 6.498 15 C -0.154 4.154 16 S -0.056 6.056 17 C -0.537 4.537 18 H 0.073 0.927 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.082 4.082 26 C -0.128 4.128 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.409 0.591 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.269 0.731 40 H 0.150 0.850 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 -19.009 -9.042 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.152 4.152 6 C -0.004 4.004 7 O -0.230 6.230 8 C 0.061 3.939 9 C -0.208 4.208 10 C -0.131 4.131 11 C 0.028 3.972 12 N -0.327 5.327 13 C 0.319 3.681 14 O -0.371 6.371 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.102 4.102 26 C -0.147 4.147 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.244 0.756 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.168 0.832 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.287 -20.401 -8.015 31.981 hybrid contribution -1.104 2.823 -0.820 3.140 sum -24.391 -17.578 -8.835 31.337 Atomic orbital electron populations 1.23328 0.75685 1.04007 1.02816 1.86495 1.23899 1.32992 1.83979 1.23347 0.91581 0.81553 0.72353 1.90716 1.67313 1.36251 1.45104 1.21097 0.87805 0.98491 1.07818 1.22355 0.79665 0.95173 1.03252 1.85951 1.21107 1.26455 1.89510 1.18858 0.92607 0.83001 0.99399 1.20997 0.99694 0.91909 1.08160 1.20687 0.92955 0.97376 1.02078 1.17744 0.91604 0.85260 1.02603 1.43634 1.26267 1.09898 1.52879 1.20523 0.79387 0.91377 0.76806 1.90696 1.57489 1.44867 1.44055 1.23542 1.05866 0.94677 1.06357 1.85413 1.18979 1.12231 1.66374 1.22862 1.12330 0.93106 1.40248 0.90848 1.24988 0.95144 0.98892 0.94463 1.70008 1.13667 1.34509 1.32035 0.86163 0.77759 0.82912 0.78643 1.20247 1.20715 1.19672 1.21248 1.01517 0.89972 0.97512 1.20349 0.91437 0.98011 1.04923 0.87804 0.91649 0.91668 0.86237 0.86196 0.90935 0.90970 0.85212 0.85441 0.75573 0.88827 0.88835 0.92122 0.83203 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.15 10.56 101.05 1.07 1.21 16 2 O -0.36 -2.32 10.57 -39.26 -0.41 -2.73 16 3 C 0.47 3.41 7.96 36.00 0.29 3.70 16 4 O -0.51 -5.09 15.73 -18.75 -0.29 -5.39 16 5 C -0.11 -0.63 6.18 -27.88 -0.17 -0.80 16 6 C 0.07 0.55 4.03 37.16 0.15 0.70 16 7 O -0.32 -3.21 10.14 -19.66 -0.20 -3.41 16 8 C 0.11 1.25 6.69 -39.23 -0.26 0.98 16 9 C -0.19 -2.04 9.03 -39.46 -0.36 -2.40 16 10 C -0.11 -1.25 9.96 -39.41 -0.39 -1.65 16 11 C 0.12 1.68 6.30 -83.62 -0.53 1.15 16 12 N -0.68 -9.30 5.34 -9.83 -0.05 -9.35 16 13 C 0.53 9.65 7.69 -10.99 -0.08 9.56 16 14 O -0.50 -10.82 13.30 5.55 0.07 -10.75 16 15 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 16 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 17 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.08 -1.20 8.69 -39.41 -0.34 -1.54 16 26 C -0.13 -1.63 9.98 -39.46 -0.39 -2.02 16 27 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.28 8.13 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 8.13 -51.93 -0.42 -0.15 16 30 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.57 7.61 -51.93 -0.40 0.18 16 33 H 0.07 0.54 7.63 -51.93 -0.40 0.15 16 34 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.41 4.13 8.82 -40.82 -0.36 3.77 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.15 2.45 6.22 -52.49 -0.33 2.13 16 41 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -35.78 373.73 -7.52 -43.31 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.16 Total: 2.03 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.61 Total: -6.63 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.68 Total: -34.49 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.84 Total: -22.28 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.78 -7.52 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064464644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.154 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds