Wall clock time and date at job start Tue Mar 31 2020 22:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99608 * 2 1 4 4 C 1.53004 * 109.47077 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47355 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99918 * 180.02562 * 5 4 3 7 7 S 1.71193 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99751 * 180.02562 * 6 5 4 9 9 N 1.40108 * 120.00319 * 359.97438 * 8 6 5 10 10 C 1.34773 * 120.00319 * 179.97438 * 9 8 6 11 11 O 1.21587 * 119.99682 * 0.02562 * 10 9 8 12 12 C 1.47638 * 119.99709 * 179.97438 * 10 9 8 13 13 C 1.40014 * 119.90180 * 0.25328 * 12 10 9 14 14 C 1.36316 * 120.10648 * 180.21031 * 13 12 10 15 15 C 1.40887 * 119.89313 * 359.51391 * 14 13 12 16 16 C 1.41107 * 120.10207 * 180.27744 * 15 14 13 17 17 H 1.07992 * 120.00096 * 154.55556 * 16 15 14 18 18 C 1.40225 * 120.00038 * 334.55132 * 16 15 14 19 19 N 1.30656 * 120.00076 * 343.04015 * 18 16 15 20 20 Si 1.86802 * 120.00124 * 163.03774 * 18 16 15 21 21 H 1.48502 * 109.46863 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47020 * 120.00279 * 20 18 16 23 23 H 1.48494 * 109.47198 * 239.99988 * 20 18 16 24 24 C 1.40882 * 119.79359 * 0.26235 * 15 14 13 25 25 C 1.36319 * 119.89539 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.47195 * 60.00313 * 1 2 3 27 27 H 1.09006 * 109.46739 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47091 * 299.99553 * 1 2 3 29 29 H 1.08995 * 109.47387 * 59.99932 * 3 2 1 30 30 H 1.08995 * 109.46906 * 299.99484 * 3 2 1 31 31 H 1.09003 * 109.47205 * 59.99316 * 4 3 2 32 32 H 1.08998 * 109.46869 * 299.99984 * 4 3 2 33 33 H 0.96997 * 119.99478 * 359.97438 * 5 4 3 34 34 H 0.96993 * 120.00384 * 179.97438 * 8 6 5 35 35 H 0.97003 * 119.99182 * 0.02562 * 9 8 6 36 36 H 1.08001 * 119.94201 * 0.02562 * 13 12 10 37 37 H 1.08002 * 120.04943 * 179.79635 * 14 13 12 38 38 H 0.96999 * 119.99629 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.05740 * 180.02562 * 24 15 14 40 40 H 1.07991 * 119.95102 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 7 4.0718 3.3676 -0.0013 6 6 5.3607 3.7616 -0.0024 7 16 6.6127 2.5941 -0.0025 8 7 5.6638 5.0748 -0.0025 9 7 4.6391 6.0304 -0.0019 10 6 4.9422 7.3436 -0.0014 11 8 6.1049 7.6990 -0.0019 12 6 3.8623 8.3503 -0.0013 13 6 2.5241 7.9386 0.0036 14 6 1.5238 8.8645 -0.0006 15 6 1.8382 10.2379 0.0004 16 6 0.8061 11.2002 0.0019 17 1 0.9874 12.1857 0.4045 18 6 -0.4548 10.8768 -0.5194 19 7 -0.5936 9.8337 -1.2939 20 14 -1.9362 11.9372 -0.1064 21 1 -1.5158 13.0503 0.7822 22 1 -2.5111 12.4933 -1.3576 23 1 -2.9592 11.1113 0.5839 24 6 3.1862 10.6474 0.0002 25 6 4.1798 9.7141 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8030 2.2372 0.8899 30 1 1.8031 2.2371 -0.8900 31 1 4.1608 1.4705 -0.8908 32 1 4.1615 1.4704 0.8891 33 1 3.3623 4.0290 -0.0016 34 1 6.5913 5.3585 -0.0029 35 1 3.7115 5.7466 -0.0010 36 1 2.2842 6.8856 0.0078 37 1 0.4918 8.5459 -0.0001 38 1 -1.4658 9.6103 -1.6547 39 1 3.4320 11.6990 0.0013 40 1 5.2134 10.0270 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094120718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:19 Heat of formation + Delta-G solvation = 30.289170 kcal Electronic energy + Delta-G solvation = -23315.541037 eV Core-core repulsion = 19769.617336 eV Total energy + Delta-G solvation = -3545.923701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.32397 -38.68904 -37.43885 -35.86704 -34.19086 -32.65241 -30.98710 -29.94052 -29.75488 -29.31798 -26.31231 -24.08234 -23.74782 -22.28853 -21.29958 -20.75539 -19.34260 -18.23640 -17.81231 -16.71875 -16.55204 -16.18700 -16.00854 -15.60997 -15.43970 -15.12726 -14.50301 -14.29508 -14.15191 -14.11363 -13.56796 -13.55519 -13.11046 -13.07202 -12.44625 -12.37310 -12.36694 -12.23188 -11.70425 -11.50275 -11.35007 -11.20754 -10.94648 -10.64820 -10.50635 -10.33855 -9.86937 -9.67777 -9.58414 -8.87122 -8.12663 -8.05872 -7.91543 -7.74140 -7.72008 -7.31199 -4.89378 0.98977 1.17395 1.35118 1.85083 2.04913 2.16365 2.64391 2.70829 2.74273 2.79362 2.84672 3.43617 3.54417 4.10306 4.24281 4.33239 4.36793 4.70731 4.72179 4.87117 5.22084 5.25432 5.28275 5.30349 5.40100 5.61356 5.77638 6.00784 6.08777 6.48448 6.49431 6.57594 6.69986 6.80939 7.07860 7.14129 7.24153 7.38316 7.56704 7.61270 7.77442 8.10068 8.33819 8.43520 8.47507 9.60091 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.002722 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.247103 B =10282.906211 C =13204.469477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.227 6.227 3 C -0.114 4.114 4 C 0.144 3.856 5 N -0.688 5.688 6 C 0.565 3.435 7 S -0.621 6.621 8 N -0.458 5.458 9 N -0.561 5.561 10 C 0.578 3.422 11 O -0.557 6.557 12 C -0.286 4.286 13 C -0.064 4.064 14 C -0.173 4.173 15 C 0.129 3.871 16 C -0.430 4.430 17 H 0.089 0.911 18 C 0.072 3.928 19 N -0.765 5.765 20 Si 0.916 3.084 21 H -0.255 1.255 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.235 4.235 25 C -0.013 4.013 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.394 0.606 34 H 0.458 0.542 35 H 0.416 0.584 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.103 0.897 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 -11.538 1.624 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.003 6.003 3 C -0.263 4.263 4 C 0.020 3.980 5 N -0.322 5.322 6 C 0.202 3.798 7 S -0.498 6.498 8 N -0.185 5.185 9 N -0.313 5.313 10 C 0.375 3.625 11 O -0.435 6.435 12 C -0.292 4.292 13 C -0.083 4.083 14 C -0.192 4.192 15 C 0.126 3.874 16 C -0.457 4.457 17 H 0.108 0.892 18 C -0.150 4.150 19 N -0.387 5.387 20 Si 0.739 3.261 21 H -0.179 1.179 22 H -0.194 1.194 23 H -0.192 1.192 24 C -0.255 4.255 25 C -0.032 4.032 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.232 0.768 34 H 0.308 0.692 35 H 0.259 0.741 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.599 -12.999 1.468 13.568 hybrid contribution -2.781 2.310 -0.005 3.615 sum -6.379 -10.689 1.463 12.534 Atomic orbital electron populations 1.23454 0.93757 1.06890 1.05306 1.87022 1.07475 1.07680 1.98092 1.23601 0.99321 0.97298 1.06111 1.21329 0.91867 0.78484 1.06344 1.44822 1.04194 1.09863 1.73324 1.22293 0.89755 0.85666 0.82048 1.93633 1.38157 1.42598 1.75366 1.44710 1.06513 0.97560 1.69704 1.45794 1.03128 1.01643 1.80774 1.18974 0.90188 0.79027 0.74335 1.90716 1.20926 1.79559 1.52344 1.18474 0.90526 0.91823 1.28410 1.20350 0.92235 0.96752 0.98960 1.20967 0.98371 0.92738 1.07127 1.17830 0.91811 0.92693 0.85096 1.20003 0.94208 0.99817 1.31623 0.89247 1.26174 1.01050 0.95414 0.92389 1.69728 1.26580 1.22992 1.19443 0.86101 0.79665 0.80571 0.79732 1.17861 1.19437 1.19213 1.20743 0.92673 0.97753 1.14282 1.20341 0.98209 0.91156 0.93502 0.90186 0.87670 0.90212 0.89049 0.89019 0.88269 0.88266 0.76850 0.69227 0.74136 0.89903 0.85973 0.89952 0.87892 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.76 101.05 1.09 0.42 16 2 S -0.23 -1.79 22.38 -107.50 -2.41 -4.20 16 3 C -0.11 -0.78 6.05 37.16 0.22 -0.55 16 4 C 0.14 1.28 5.14 -4.04 -0.02 1.26 16 5 N -0.69 -6.69 5.52 -62.03 -0.34 -7.03 16 6 C 0.57 7.42 7.97 -86.92 -0.69 6.73 16 7 S -0.62 -10.22 29.32 -107.50 -3.15 -13.37 16 8 N -0.46 -6.34 6.26 29.96 0.19 -6.15 16 9 N -0.56 -7.94 6.21 30.48 0.19 -7.75 16 10 C 0.58 10.60 7.88 -12.43 -0.10 10.50 16 11 O -0.56 -11.68 16.16 5.29 0.09 -11.59 16 12 C -0.29 -5.64 5.89 -104.73 -0.62 -6.26 16 13 C -0.06 -1.19 9.47 -39.61 -0.38 -1.57 16 14 C -0.17 -3.69 8.63 -39.27 -0.34 -4.03 16 15 C 0.13 2.93 5.57 -106.81 -0.59 2.34 16 16 C -0.43 -9.59 9.05 -37.75 -0.34 -9.93 16 17 H 0.09 1.91 7.90 -52.49 -0.41 1.49 16 18 C 0.07 1.51 5.15 -17.31 -0.09 1.42 16 19 N -0.76 -16.38 10.95 55.56 0.61 -15.78 16 20 Si 0.92 15.53 29.59 -169.99 -5.03 10.50 16 21 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 22 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 23 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16 24 C -0.24 -5.07 9.73 -39.27 -0.38 -5.45 16 25 C -0.01 -0.26 9.52 -39.60 -0.38 -0.64 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.00 7.99 -51.93 -0.41 0.58 16 32 H 0.10 0.99 7.99 -51.93 -0.42 0.58 16 33 H 0.39 3.09 6.39 -40.82 -0.26 2.82 16 34 H 0.46 6.78 7.98 -182.60 -1.46 5.32 16 35 H 0.42 4.78 4.70 -182.59 -0.86 3.92 16 36 H 0.08 1.21 6.37 -52.49 -0.33 0.88 16 37 H 0.12 2.64 6.18 -52.49 -0.32 2.32 16 38 H 0.29 5.52 8.29 -40.82 -0.34 5.18 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.11 2.11 7.63 -52.49 -0.40 1.71 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -27.59 368.73 -13.47 -41.06 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -6.55 Total: 14.51 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.62 Total: -5.75 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.64 Total: -36.71 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 15.53 SS G_CDS: -5.03 Total: 10.50 kcal Atomic # 16 Polarization: -12.01 SS G_CDS: -5.56 Total: -17.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.59 -13.47 -41.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094120718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.354 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds