Wall clock time and date at job start Tue Mar 31 2020 22:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47230 * 2 1 4 4 C 1.50700 * 109.47005 * 240.00092 * 2 1 3 5 5 H 1.08001 * 120.00250 * 240.00485 * 4 2 1 6 6 C 1.37876 * 120.00158 * 59.99961 * 4 2 1 7 7 N 1.31515 * 119.99936 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00203 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47206 * 90.00015 * 8 6 4 10 10 H 1.48503 * 109.47104 * 210.00288 * 8 6 4 11 11 H 1.48496 * 109.46993 * 330.00002 * 8 6 4 12 12 N 1.46491 * 109.46921 * 120.00186 * 2 1 3 13 13 S 1.65607 * 120.00057 * 264.99571 * 12 2 1 14 14 O 1.42097 * 106.40091 * 311.46214 * 13 12 2 15 15 O 1.42098 * 106.40207 * 178.53913 * 13 12 2 16 16 C 1.76200 * 107.21437 * 65.00233 * 13 12 2 17 17 C 1.38236 * 120.00082 * 90.00501 * 16 13 12 18 18 C 1.38236 * 120.00290 * 179.97438 * 17 16 13 19 19 C 1.38237 * 119.99683 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00162 * 180.02562 * 19 18 17 21 21 C 1.50702 * 115.55838 * 325.68477 * 20 19 18 22 22 O 1.20821 * 120.00110 * 214.31209 * 21 20 19 23 23 O 1.34236 * 120.00117 * 34.31288 * 21 20 19 24 24 C 1.53000 * 117.50321 * 179.97438 * 20 19 18 25 25 C 1.52997 * 117.50247 * 111.37032 * 20 19 18 26 26 C 1.38232 * 120.00057 * 0.27330 * 19 18 17 27 27 C 1.38238 * 119.99911 * 270.02082 * 16 13 12 28 28 H 1.09006 * 109.47229 * 59.99663 * 1 2 3 29 29 H 1.08997 * 109.47630 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47399 * 300.00319 * 1 2 3 31 31 H 0.97008 * 120.00341 * 180.02562 * 7 6 4 32 32 H 0.97005 * 120.00377 * 84.99927 * 12 2 1 33 33 H 1.08003 * 119.99995 * 359.97438 * 17 16 13 34 34 H 1.07994 * 120.00236 * 179.97438 * 18 17 16 35 35 H 0.96699 * 116.99891 * 180.02562 * 23 21 20 36 36 H 1.08990 * 117.49990 * 145.01584 * 24 20 19 37 37 H 1.09004 * 117.49237 * 359.97438 * 24 20 19 38 38 H 1.08999 * 117.49685 * 0.02562 * 25 20 19 39 39 H 1.08999 * 117.52022 * 214.97066 * 25 20 19 40 40 H 1.08002 * 120.00390 * 179.73111 * 26 19 18 41 41 H 1.07994 * 119.99895 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0182 -0.6906 1.1961 13 16 2.4122 0.1772 2.5505 14 8 3.2437 1.2442 2.1155 15 8 2.8123 -0.7698 3.5315 16 6 0.9275 0.9147 3.1474 17 6 0.1385 0.2394 4.0598 18 6 -1.0260 0.8183 4.5285 19 6 -1.4013 2.0727 4.0852 20 6 -2.6706 2.7040 4.5965 21 6 -3.8036 1.7509 4.8772 22 8 -4.9452 2.0957 4.6836 23 8 -3.5445 0.5186 5.3424 24 6 -3.0308 4.0940 4.0683 25 6 -2.5348 3.9272 5.5055 26 6 -0.6151 2.7458 3.1689 27 6 0.5514 2.1686 2.7030 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.7088 1.1615 -3.4844 32 1 2.1109 -1.6562 1.1948 33 1 0.4320 -0.7405 4.4064 34 1 -1.6426 0.2905 5.2409 35 1 -4.3037 -0.0571 5.5071 36 1 -4.0874 4.3191 3.9234 37 1 -2.3495 4.5520 3.3512 38 1 -1.5274 4.2755 5.7334 39 1 -3.2649 4.0429 6.3066 40 1 -0.9105 3.7240 2.8192 41 1 1.1675 2.6958 1.9897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158994168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:04 Heat of formation + Delta-G solvation = -109.557320 kcal Electronic energy + Delta-G solvation = -27513.687134 eV Core-core repulsion = 23486.653612 eV Total energy + Delta-G solvation = -4027.033522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13137 -39.27262 -37.28967 -36.72223 -36.19865 -35.45137 -35.30544 -32.20382 -31.15006 -30.85733 -28.31923 -26.16838 -25.25202 -23.40487 -23.06100 -22.30606 -20.96911 -20.35126 -19.04974 -18.61489 -17.61667 -17.48857 -17.15881 -16.16693 -15.94449 -15.55454 -15.27892 -15.09318 -14.88168 -14.41599 -14.08465 -13.80619 -13.59767 -13.24676 -13.09110 -12.68030 -12.37030 -12.21274 -12.00307 -11.91068 -11.75929 -11.57927 -11.50839 -11.41214 -11.22404 -11.14901 -11.00282 -10.91366 -10.87766 -10.65460 -10.42708 -10.35573 -10.10791 -9.24511 -9.03941 -8.91981 -8.65295 -8.30253 -6.14679 -4.21591 0.72607 1.06657 1.39181 1.75903 2.56151 3.18174 3.25300 3.32384 3.35869 3.54409 3.80982 4.00794 4.23045 4.29777 4.35624 4.44310 4.65928 4.70339 5.01359 5.13139 5.14268 5.18755 5.25756 5.34571 5.48558 5.64746 5.67951 5.77794 6.05352 6.09858 6.19961 6.25027 6.32180 6.39354 6.74637 6.81508 6.88329 6.98441 7.54537 7.55737 7.64510 7.83715 7.98592 8.24473 8.80928 9.44381 10.91515 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.003493 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.267647 B = 8013.537011 C = 8972.329576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.268 3.732 3 H 0.051 0.949 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.098 6.098 13 S 2.688 3.312 14 O -0.961 6.961 15 O -0.982 6.982 16 C -0.663 4.663 17 C -0.019 4.019 18 C -0.132 4.132 19 C -0.010 4.010 20 C -0.111 4.111 21 C 0.525 3.475 22 O -0.511 6.511 23 O -0.503 6.503 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.135 4.135 27 C -0.008 4.008 28 H 0.093 0.907 29 H 0.033 0.967 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.410 0.590 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.409 0.591 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 3.973 15.649 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.859 5.859 13 S 2.776 3.224 14 O -0.951 6.951 15 O -0.972 6.972 16 C -0.748 4.748 17 C -0.038 4.038 18 C -0.150 4.150 19 C -0.011 4.011 20 C -0.112 4.112 21 C 0.367 3.633 22 O -0.399 6.399 23 O -0.315 6.315 24 C -0.173 4.173 25 C -0.170 4.170 26 C -0.154 4.154 27 C -0.027 4.027 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.269 0.731 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.825 4.750 15.755 18.221 hybrid contribution -1.119 -1.176 -0.849 1.832 sum -8.944 3.574 14.905 17.747 Atomic orbital electron populations 1.22307 0.98570 1.00035 1.00987 1.18627 0.90743 0.93110 0.81121 0.93105 1.21220 1.31895 1.13153 0.89794 0.91701 1.24905 0.94870 0.95001 0.99070 1.69858 1.36298 1.22594 1.23934 0.86443 0.79282 0.79263 0.82111 1.20632 1.21085 1.19751 1.55519 1.83833 1.19113 1.27473 1.01920 0.73995 0.73670 0.72825 1.93571 1.63369 1.56652 1.81498 1.93518 1.81433 1.61926 1.60312 1.31274 1.24940 1.07023 1.11580 1.20891 0.92178 0.98661 0.92084 1.21471 0.97204 0.95058 1.01302 1.18912 0.92247 0.94548 0.95351 1.19713 0.92901 0.88791 1.09793 1.21890 0.88422 0.80669 0.72313 1.90726 1.23102 1.76941 1.49120 1.84559 1.43823 1.25679 1.77486 1.23332 1.04240 0.92519 0.97181 1.23235 1.04394 0.94868 0.94475 1.21081 0.95334 1.00964 0.98016 1.20941 0.94667 0.92351 0.94755 0.88825 0.94774 0.96685 0.92588 0.75647 0.84291 0.83293 0.73071 0.86549 0.86352 0.86637 0.87454 0.84965 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.29 37.16 0.35 -3.21 16 2 C 0.27 6.29 2.89 -69.09 -0.20 6.09 16 3 H 0.05 1.30 7.50 -51.93 -0.39 0.91 16 4 C -0.52 -13.52 8.76 -34.44 -0.30 -13.82 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.32 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 N -1.10 -21.76 5.46 -5.89 -0.03 -21.80 16 13 S 2.69 50.06 5.72 -107.50 -0.61 49.45 16 14 O -0.96 -20.70 16.62 -57.17 -0.95 -21.65 16 15 O -0.98 -18.97 17.28 -57.17 -0.99 -19.96 16 16 C -0.66 -10.77 5.06 -39.58 -0.20 -10.97 16 17 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 18 C -0.13 -1.68 9.08 -39.58 -0.36 -2.04 16 19 C -0.01 -0.13 5.44 -104.62 -0.57 -0.69 16 20 C -0.11 -1.13 2.50 -156.81 -0.39 -1.52 16 21 C 0.52 5.67 7.84 36.01 0.28 5.95 16 22 O -0.51 -6.68 17.02 -18.75 -0.32 -7.00 16 23 O -0.50 -4.18 10.10 -39.27 -0.40 -4.57 16 24 C -0.14 -1.14 9.38 -26.75 -0.25 -1.40 16 25 C -0.13 -1.00 9.93 -26.75 -0.27 -1.27 16 26 C -0.14 -1.75 9.39 -39.58 -0.37 -2.12 16 27 C -0.01 -0.12 8.58 -39.58 -0.34 -0.46 16 28 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.01 0.28 6.16 -51.93 -0.32 -0.04 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.41 7.36 8.83 -34.47 -0.30 7.06 16 33 H 0.14 1.79 7.62 -52.48 -0.40 1.39 16 34 H 0.15 1.61 5.29 -52.49 -0.28 1.33 16 35 H 0.41 1.61 9.10 45.56 0.41 2.03 16 36 H 0.12 0.99 7.67 -51.93 -0.40 0.60 16 37 H 0.12 0.86 6.08 -51.93 -0.32 0.55 16 38 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.13 1.36 5.93 -52.49 -0.31 1.04 16 41 H 0.14 2.25 7.62 -52.49 -0.40 1.85 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -33.70 355.77 -9.26 -42.96 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -3.83 Total: 9.60 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -3.10 Total: -24.51 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.60 Total: -45.12 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -2.65 Total: -53.19 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 50.06 SS G_CDS: -0.61 Total: 49.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.70 -9.26 -42.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158994168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.599 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds