Wall clock time and date at job start Tue Mar 31 2020 22:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00290 * 2 1 4 4 O 1.42896 * 109.47488 * 134.99823 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 S 1.65595 * 120.00344 * 179.97438 * 11 9 8 13 13 O 1.42103 * 104.27891 * 181.06903 * 12 11 9 14 14 O 1.42100 * 104.27908 * 308.93047 * 12 11 9 15 15 C 1.81406 * 104.44925 * 64.99997 * 12 11 9 16 16 C 1.53000 * 109.47140 * 180.02562 * 15 12 11 17 17 C 1.50707 * 109.46880 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99593 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99603 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00301 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99599 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47495 * 60.00153 * 21 19 17 23 23 H 1.48496 * 109.47257 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47074 * 299.99988 * 21 19 17 25 25 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 26 26 C 1.37709 * 119.90833 * 359.97438 * 25 8 7 27 27 H 1.08002 * 119.99807 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00372 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99807 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46861 * 14.99372 * 3 2 1 31 31 H 1.09005 * 109.46841 * 255.00330 * 3 2 1 32 32 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 34 34 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.47028 * 299.99921 * 15 12 11 36 36 H 1.08999 * 109.47249 * 59.99824 * 15 12 11 37 37 H 1.08999 * 109.47041 * 299.99846 * 16 15 12 38 38 H 1.08999 * 109.47249 * 59.99756 * 16 15 12 39 39 H 0.96999 * 119.99747 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.04691 * 180.02562 * 25 8 7 41 41 H 1.07999 * 119.95155 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6518 3.4674 0.3017 7 6 4.4461 4.5857 0.4221 8 6 5.5044 4.5938 1.3346 9 6 6.3542 5.7927 1.4717 10 8 6.1336 6.7753 0.7904 11 7 7.3747 5.7984 2.3519 12 16 8.3286 7.1433 2.5052 13 8 9.2921 6.7799 3.4844 14 8 8.7174 7.4509 1.1735 15 6 7.2125 8.4183 3.1531 16 6 7.9853 9.7255 3.3398 17 6 7.0579 10.7849 3.8774 18 1 6.0212 10.5491 4.0673 19 6 7.5333 12.0546 4.1278 20 7 8.7959 12.3415 3.8970 21 14 6.3840 13.3675 4.7948 22 1 5.8339 12.9263 6.1016 23 1 7.1340 14.6363 4.9759 24 1 5.2704 13.5838 3.8364 25 6 5.7558 3.4638 2.1173 26 6 4.9600 2.3475 1.9870 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4867 -0.9927 32 1 2.8309 3.4620 -0.4002 33 1 4.2487 5.4571 -0.1846 34 1 7.5505 5.0146 2.8957 35 1 6.3952 8.5772 2.4497 36 1 6.8086 8.0944 4.1123 37 1 8.8029 9.5670 4.0430 38 1 8.3889 10.0493 2.3804 39 1 9.1302 13.2350 4.0728 40 1 6.5725 3.4663 2.8240 41 1 5.1534 1.4739 2.5919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181291594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:37 Heat of formation + Delta-G solvation = -102.882603 kcal Electronic energy + Delta-G solvation = -25847.233902 eV Core-core repulsion = 21820.489817 eV Total energy + Delta-G solvation = -4026.744085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.91561 -39.91426 -37.67791 -36.65969 -35.60164 -34.69565 -34.50072 -33.87793 -31.51639 -31.16713 -30.57321 -27.28344 -25.61548 -24.32809 -23.13821 -21.72769 -21.35721 -20.53630 -19.49883 -18.76441 -18.32534 -17.58581 -16.78950 -16.54816 -16.22515 -15.78723 -15.75993 -15.16755 -14.93167 -14.82508 -14.76354 -14.52811 -14.02011 -13.86426 -13.42787 -13.37381 -13.01548 -12.86584 -12.52497 -12.32022 -11.80140 -11.78481 -11.70991 -11.67644 -11.59671 -11.27898 -11.05441 -10.98596 -10.85528 -10.43697 -10.37876 -10.27849 -10.12211 -9.69473 -9.52871 -9.17341 -8.71904 -8.47734 -6.10192 -4.15570 0.43073 0.53822 0.90667 1.45148 2.34773 2.73634 2.76091 3.29742 3.34139 3.36322 3.42608 4.00598 4.15096 4.19856 4.32820 4.36625 4.39134 4.44113 4.63034 4.65370 4.75361 4.82345 4.91005 4.95757 5.10588 5.24303 5.24995 5.54259 5.61766 5.68195 5.74809 5.82522 5.90982 5.92081 5.97326 6.17835 6.48391 6.65808 6.84370 7.30441 7.37247 7.47604 7.82670 8.18792 8.87054 9.48716 11.00834 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002200 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.847112 B =12723.654926 C =13773.252689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C 0.083 3.917 4 O -0.307 6.307 5 C 0.160 3.840 6 C -0.220 4.220 7 C -0.010 4.010 8 C -0.179 4.179 9 C 0.583 3.417 10 O -0.489 6.489 11 N -1.057 6.057 12 S 2.567 3.433 13 O -0.954 6.954 14 O -0.937 6.937 15 C -0.575 4.575 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.039 4.039 26 C -0.159 4.159 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.426 0.574 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.266 0.734 40 H 0.138 0.862 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -26.365 -6.029 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.009 3.991 4 O -0.220 6.220 5 C 0.114 3.886 6 C -0.239 4.239 7 C -0.029 4.029 8 C -0.185 4.185 9 C 0.371 3.629 10 O -0.362 6.362 11 N -0.818 5.818 12 S 2.667 3.333 13 O -0.944 6.944 14 O -0.927 6.927 15 C -0.710 4.710 16 C -0.010 4.010 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.058 4.058 26 C -0.178 4.178 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.262 0.738 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.477 -25.708 -6.685 29.787 hybrid contribution -1.152 0.516 0.719 1.452 sum -14.629 -25.193 -5.966 29.737 Atomic orbital electron populations 1.23931 0.95419 1.02777 0.98344 1.22643 0.95670 0.97664 1.01736 1.21934 0.87744 0.97218 0.92211 1.86059 1.41946 1.35581 1.58414 1.19295 0.90175 0.85613 0.93554 1.21249 1.04148 0.94007 1.04466 1.21144 0.90502 0.97575 0.93643 1.19752 1.00496 0.94968 1.03241 1.18053 0.78978 0.88043 0.77776 1.90984 1.68742 1.34520 1.41911 1.55367 1.43737 1.35110 1.47586 1.06686 0.75928 0.75227 0.75427 1.93591 1.56785 1.81739 1.62323 1.93598 1.80202 1.82924 1.35962 1.30338 1.14983 1.14202 1.11443 1.18994 0.95464 0.87533 0.98990 1.20941 0.95977 0.94693 1.44274 0.92015 1.25062 0.95333 0.98637 0.95443 1.69944 1.13788 1.21338 1.47750 0.86503 0.80589 0.80575 0.79437 1.20095 1.21082 1.20052 1.21158 0.97361 0.91106 0.96140 1.20348 0.96025 1.00199 1.01232 0.88097 0.87299 0.86134 0.90996 0.90565 0.84568 0.83732 0.73847 0.85012 0.86006 0.94736 0.94542 0.92473 0.84438 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 14.31 29.02 0.42 -0.22 16 2 C -0.16 -0.77 9.89 -36.03 -0.36 -1.13 16 3 C 0.08 0.46 5.15 36.00 0.19 0.64 16 4 O -0.31 -2.45 10.11 -18.81 -0.19 -2.64 16 5 C 0.16 1.35 6.70 -39.02 -0.26 1.09 16 6 C -0.22 -1.80 9.01 -39.49 -0.36 -2.15 16 7 C -0.01 -0.10 9.58 -39.22 -0.38 -0.47 16 8 C -0.18 -1.98 5.87 -104.96 -0.62 -2.59 16 9 C 0.58 8.29 7.50 -12.44 -0.09 8.20 16 10 O -0.49 -8.74 14.44 -11.83 -0.17 -8.91 16 11 N -1.06 -14.01 5.55 30.47 0.17 -13.84 16 12 S 2.57 47.22 5.11 -107.50 -0.55 46.67 16 13 O -0.95 -18.90 18.08 -57.54 -1.04 -19.94 16 14 O -0.94 -20.75 17.04 -64.79 -1.10 -21.86 16 15 C -0.57 -11.54 5.82 37.16 0.22 -11.32 16 16 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.04 -0.33 9.53 -39.22 -0.37 -0.70 16 26 C -0.16 -1.26 9.97 -39.50 -0.39 -1.66 16 27 H 0.10 0.31 7.90 -52.49 -0.41 -0.10 16 28 H 0.11 0.29 8.06 -52.49 -0.42 -0.13 16 29 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 30 H 0.07 0.33 7.36 -51.93 -0.38 -0.05 16 31 H 0.08 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.14 0.79 6.28 -52.48 -0.33 0.46 16 33 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 34 H 0.43 3.83 6.81 -34.47 -0.23 3.60 16 35 H 0.13 2.60 7.19 -51.92 -0.37 2.23 16 36 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.14 0.77 6.39 -52.48 -0.34 0.43 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -37.62 369.24 -9.11 -46.73 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.95 Total: 0.76 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -2.56 Total: -23.05 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.91 Total: -39.80 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -2.50 Total: -53.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 47.22 SS G_CDS: -0.55 Total: 46.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.62 -9.11 -46.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181291594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.156 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds