Wall clock time and date at job start Tue Mar 31 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 8 8 N 1.46499 * 109.47547 * 179.72203 * 6 4 3 9 9 C 1.34770 * 120.00247 * 84.99377 * 8 6 4 10 10 O 1.21286 * 119.99823 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00229 * 179.97438 * 9 8 6 12 12 S 1.81002 * 109.46977 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99731 * 180.02562 * 12 11 9 14 14 H 1.08009 * 119.99970 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00199 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00008 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99977 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47318 * 89.99592 * 17 15 13 19 19 H 1.48493 * 109.47238 * 209.99897 * 17 15 13 20 20 H 1.48502 * 109.46921 * 329.99811 * 17 15 13 21 21 C 1.50700 * 109.47039 * 59.71909 * 6 4 3 22 22 C 1.38287 * 119.97269 * 79.72879 * 21 6 4 23 23 C 1.38248 * 120.11047 * 179.72214 * 22 21 6 24 24 C 1.38169 * 120.05480 * 0.55275 * 23 22 21 25 25 C 1.38709 * 119.94388 * 359.72165 * 24 23 22 26 26 O 1.35895 * 120.05240 * 179.97438 * 25 24 23 27 27 C 1.38122 * 119.97239 * 260.00291 * 21 6 4 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 0.96998 * 119.99825 * 264.99979 * 8 6 4 34 34 H 1.08993 * 109.47372 * 300.00878 * 11 9 8 35 35 H 1.09004 * 109.46533 * 60.00822 * 11 9 8 36 36 H 0.97006 * 119.99603 * 180.02562 * 16 15 13 37 37 H 1.07993 * 119.94450 * 359.97438 * 22 21 6 38 38 H 1.08000 * 119.97229 * 180.25498 * 23 22 21 39 39 H 1.08001 * 120.02804 * 179.70248 * 24 23 22 40 40 H 0.96701 * 113.99950 * 270.01919 * 26 25 24 41 41 H 1.08000 * 120.02997 * 0.02562 * 27 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5878 3.4722 -0.8839 8 7 5.3836 2.8607 0.0105 9 6 6.0553 2.7273 -1.1503 10 8 5.4485 2.6711 -2.1990 11 6 7.5603 2.6490 -1.1454 12 16 8.1608 2.4745 -2.8440 13 6 9.8967 2.4078 -2.5493 14 1 10.2761 2.4731 -1.5401 15 6 10.7767 2.2724 -3.6141 16 7 12.0735 2.2231 -3.3940 17 14 10.1208 2.1616 -5.3596 18 1 10.0207 3.5256 -5.9383 19 1 11.0435 1.3406 -6.1840 20 1 8.7766 1.5306 -5.3441 21 6 3.4519 3.6694 1.2367 22 6 4.0682 3.4403 2.4533 23 6 3.6443 4.1146 3.5833 24 6 2.5959 5.0108 3.5018 25 6 1.9724 5.2381 2.2838 26 8 0.9407 6.1188 2.2013 27 6 2.4035 4.5644 1.1500 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 5.8689 2.9060 0.8491 34 1 7.9700 3.5590 -0.7072 35 1 7.8773 1.7878 -0.5573 36 1 12.6885 2.1288 -4.1382 37 1 4.8846 2.7366 2.5200 38 1 4.1299 3.9370 4.5315 39 1 2.2619 5.5337 4.3859 40 1 0.0715 5.7212 2.3480 41 1 1.9193 4.7394 0.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270288344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:22 Heat of formation + Delta-G solvation = -135.857348 kcal Electronic energy + Delta-G solvation = -26433.344175 eV Core-core repulsion = 22405.170198 eV Total energy + Delta-G solvation = -4028.173977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17001 -39.97251 -39.21292 -37.35435 -36.74080 -34.83719 -32.43725 -32.33810 -31.70612 -30.32254 -29.41922 -27.21392 -25.59602 -23.78218 -23.16240 -22.44961 -21.33046 -20.41512 -18.88481 -18.10782 -17.63298 -17.09298 -16.92529 -16.78186 -16.43229 -16.05406 -15.67864 -15.25786 -14.95164 -14.77688 -14.46692 -14.15438 -13.89141 -13.61901 -13.52137 -13.14103 -13.04576 -12.79225 -12.72242 -12.37142 -12.20735 -12.07614 -12.00701 -11.82931 -11.26628 -11.00798 -10.98875 -10.83350 -10.75078 -10.62295 -9.88707 -9.73041 -9.41330 -9.24543 -9.05950 -8.99330 -8.50640 -6.91433 -6.28135 -3.99951 0.70646 0.85858 2.02785 2.16256 2.71992 2.96016 3.10717 3.32332 3.34975 3.51522 3.60675 3.77276 4.06808 4.33896 4.42780 4.49651 4.64695 4.67345 4.69075 4.71388 4.80257 4.89417 4.99436 5.08117 5.11007 5.29430 5.36377 5.37147 5.47206 5.49557 5.64508 5.74930 5.90145 5.94818 5.96319 6.00717 6.17037 6.25316 6.31328 7.23533 7.36998 7.57719 7.94964 8.31119 8.42643 9.17956 10.81105 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.002802 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.592052 B = 9991.400514 C =11177.871834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.454 3.546 5 O -0.486 6.486 6 C 0.204 3.796 7 H 0.136 0.864 8 N -0.715 5.715 9 C 0.541 3.459 10 O -0.513 6.513 11 C -0.122 4.122 12 S -0.139 6.139 13 C -0.521 4.521 14 H 0.089 0.911 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.856 3.144 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.077 4.077 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.137 4.137 25 C 0.108 3.892 26 O -0.497 6.497 27 C -0.114 4.114 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.392 0.608 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.939 2.104 16.166 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.293 3.707 5 O -0.371 6.371 6 C 0.095 3.905 7 H 0.153 0.847 8 N -0.371 5.371 9 C 0.328 3.672 10 O -0.386 6.386 11 C -0.272 4.272 12 S 0.087 5.913 13 C -0.668 4.668 14 H 0.107 0.893 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.155 4.155 25 C 0.064 3.936 26 O -0.307 6.307 27 C -0.133 4.133 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.244 0.756 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.248 0.752 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.096 2.064 14.202 29.782 hybrid contribution 0.642 -0.545 0.945 1.266 sum -25.454 1.519 15.146 29.658 Atomic orbital electron populations 1.21793 0.92544 1.02974 1.03460 1.23046 0.95335 0.80181 1.02771 1.86479 1.24129 1.32468 1.84071 1.24066 0.80974 0.92775 0.72845 1.90712 1.60352 1.42295 1.43783 1.19042 0.82464 0.89484 0.99471 0.84682 1.45811 1.03759 1.76970 1.10538 1.20398 0.89855 0.74172 0.82810 1.90708 1.69746 1.47256 1.30877 1.23254 0.92327 1.06111 1.05552 1.84795 1.06745 1.96405 1.03324 1.22311 0.88217 1.58177 0.98133 0.89300 1.24704 0.94109 0.93216 0.99262 1.69940 1.01397 1.47745 1.32597 0.86740 0.81250 0.79722 0.84177 1.19177 1.19929 1.15919 1.19274 0.97315 0.97857 0.93306 1.21042 1.00210 1.00246 0.92009 1.21012 0.96293 0.95664 0.98607 1.21526 0.97835 0.98751 0.97429 1.18356 0.91729 0.91322 0.92211 1.84846 1.16839 1.35017 1.94017 1.21253 0.97346 0.95208 0.99500 0.90227 0.91593 0.91358 0.91020 0.91289 0.75643 0.88110 0.88023 0.91934 0.85390 0.84955 0.85088 0.75215 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.15 0.38 -0.58 16 2 C 0.06 0.58 6.19 37.15 0.23 0.81 16 3 O -0.35 -4.14 10.13 -39.26 -0.40 -4.54 16 4 C 0.45 6.27 7.27 36.00 0.26 6.53 16 5 O -0.49 -8.25 16.07 -18.76 -0.30 -8.55 16 6 C 0.20 2.50 2.68 -70.24 -0.19 2.31 16 7 H 0.14 1.70 7.44 -51.93 -0.39 1.31 16 8 N -0.71 -9.70 4.56 -56.07 -0.26 -9.95 16 9 C 0.54 9.87 7.68 -10.99 -0.08 9.78 16 10 O -0.51 -11.13 15.52 5.55 0.09 -11.04 16 11 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 12 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 13 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 14 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 15 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 17 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 21 C -0.08 -0.74 4.87 -104.65 -0.51 -1.25 16 22 C -0.12 -0.99 9.04 -39.56 -0.36 -1.35 16 23 C -0.10 -0.70 10.04 -39.60 -0.40 -1.09 16 24 C -0.14 -0.99 9.99 -39.43 -0.39 -1.38 16 25 C 0.11 0.88 6.70 -39.22 -0.26 0.62 16 26 O -0.50 -3.56 13.50 -19.41 -0.26 -3.82 16 27 C -0.11 -1.01 9.61 -39.43 -0.38 -1.39 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.41 4.38 6.88 -40.82 -0.28 4.09 16 34 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 35 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.13 0.97 6.93 -52.49 -0.36 0.61 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.39 0.89 9.06 45.56 0.41 1.30 16 41 H 0.14 1.09 8.04 -52.49 -0.42 0.67 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -37.67 374.83 -7.10 -44.77 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.42 Total: 3.01 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.26 Total: -1.25 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.52 Total: -35.92 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.88 Total: -27.95 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.67 -7.10 -44.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270288344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.090 kcal (2) G-P(sol) polarization free energy of solvation -37.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds