Wall clock time and date at job start Tue Mar 31 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 8 8 N 1.46499 * 109.47547 * 179.72203 * 6 4 3 9 9 C 1.34770 * 120.00247 * 84.99377 * 8 6 4 10 10 O 1.21286 * 119.99823 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00229 * 179.97438 * 9 8 6 12 12 S 1.81002 * 109.46977 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99731 * 180.02562 * 12 11 9 14 14 H 1.08009 * 119.99970 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00199 * 180.02562 * 13 12 11 16 16 N 1.31626 * 120.00008 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99977 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47318 * 89.99592 * 17 15 13 19 19 H 1.48493 * 109.47238 * 209.99897 * 17 15 13 20 20 H 1.48502 * 109.46921 * 329.99811 * 17 15 13 21 21 C 1.50700 * 109.47039 * 59.71909 * 6 4 3 22 22 C 1.38287 * 119.97269 * 79.72879 * 21 6 4 23 23 C 1.38248 * 120.11047 * 179.72214 * 22 21 6 24 24 C 1.38169 * 120.05480 * 0.55275 * 23 22 21 25 25 C 1.38709 * 119.94388 * 359.72165 * 24 23 22 26 26 O 1.35895 * 120.05240 * 179.97438 * 25 24 23 27 27 C 1.38122 * 119.97239 * 260.00291 * 21 6 4 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 0.96998 * 119.99825 * 264.99979 * 8 6 4 34 34 H 1.08993 * 109.47372 * 300.00878 * 11 9 8 35 35 H 1.09004 * 109.46533 * 60.00822 * 11 9 8 36 36 H 0.97006 * 119.99603 * 180.02562 * 16 15 13 37 37 H 1.07993 * 119.94450 * 359.97438 * 22 21 6 38 38 H 1.08000 * 119.97229 * 180.25498 * 23 22 21 39 39 H 1.08001 * 120.02804 * 179.70248 * 24 23 22 40 40 H 0.96701 * 113.99950 * 270.01919 * 26 25 24 41 41 H 1.08000 * 120.02997 * 0.02562 * 27 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5878 3.4722 -0.8839 8 7 5.3836 2.8607 0.0105 9 6 6.0553 2.7273 -1.1503 10 8 5.4485 2.6711 -2.1990 11 6 7.5603 2.6490 -1.1454 12 16 8.1608 2.4745 -2.8440 13 6 9.8967 2.4078 -2.5493 14 1 10.2761 2.4731 -1.5401 15 6 10.7767 2.2724 -3.6141 16 7 12.0735 2.2231 -3.3940 17 14 10.1208 2.1616 -5.3596 18 1 10.0207 3.5256 -5.9383 19 1 11.0435 1.3406 -6.1840 20 1 8.7766 1.5306 -5.3441 21 6 3.4519 3.6694 1.2367 22 6 4.0682 3.4403 2.4533 23 6 3.6443 4.1146 3.5833 24 6 2.5959 5.0108 3.5018 25 6 1.9724 5.2381 2.2838 26 8 0.9407 6.1188 2.2013 27 6 2.4035 4.5644 1.1500 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 5.8689 2.9060 0.8491 34 1 7.9700 3.5590 -0.7072 35 1 7.8773 1.7878 -0.5573 36 1 12.6885 2.1288 -4.1382 37 1 4.8846 2.7366 2.5200 38 1 4.1299 3.9370 4.5315 39 1 2.2619 5.5337 4.3859 40 1 0.0715 5.7212 2.3480 41 1 1.9193 4.7394 0.2006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270288344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:21 Heat of formation + Delta-G solvation = -163.112426 kcal Electronic energy + Delta-G solvation = -26434.526044 eV Core-core repulsion = 22405.170198 eV Total energy + Delta-G solvation = -4029.355846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.19920 -40.74765 -40.44742 -38.11900 -37.71469 -35.92472 -34.68432 -33.27681 -32.44751 -31.22434 -30.46342 -28.28695 -27.80669 -24.54903 -23.80237 -23.18807 -22.39264 -21.60591 -20.06184 -19.52624 -18.74145 -18.21134 -18.12827 -17.63217 -17.40467 -17.14541 -16.91264 -16.50563 -16.29314 -16.00228 -15.59329 -15.27035 -15.02642 -14.86103 -14.70950 -14.56703 -13.94456 -13.70977 -13.66379 -13.38217 -13.35451 -13.02806 -13.02103 -12.86360 -12.71584 -12.64401 -12.54577 -12.00914 -11.89003 -11.60648 -11.50791 -11.27237 -11.18131 -10.58773 -10.56978 -9.95539 -9.66835 -9.01995 -8.52589 -6.23777 0.06542 0.26737 0.87717 0.96093 1.14602 1.30370 1.44244 1.50628 1.66693 2.09699 2.24152 2.60246 2.69028 2.85655 3.08814 3.38922 3.59451 3.64519 3.79888 3.94729 4.03206 4.08702 4.13843 4.18397 4.23685 4.28983 4.41398 4.51510 4.74278 4.76998 4.89010 4.90303 4.99592 5.07823 5.29489 5.33770 5.38794 5.41189 5.69957 5.77534 6.10744 6.16571 6.52344 6.87182 6.92174 6.93945 8.59870 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.002802 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.592052 B = 9991.400514 C =11177.871834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.456 3.544 5 O -0.525 6.525 6 C 0.205 3.795 7 H 0.131 0.869 8 N -0.695 5.695 9 C 0.546 3.454 10 O -0.552 6.552 11 C -0.110 4.110 12 S -0.172 6.172 13 C -0.528 4.528 14 H 0.064 0.936 15 C 0.046 3.954 16 N -0.916 5.916 17 Si 0.913 3.087 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.239 1.239 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.135 4.135 25 C 0.106 3.894 26 O -0.508 6.508 27 C -0.124 4.124 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.422 0.578 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.277 0.723 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.412 0.588 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.031 2.682 17.609 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.297 3.703 5 O -0.413 6.413 6 C 0.098 3.902 7 H 0.149 0.851 8 N -0.350 5.350 9 C 0.332 3.668 10 O -0.429 6.429 11 C -0.261 4.261 12 S 0.055 5.945 13 C -0.676 4.676 14 H 0.082 0.918 15 C -0.159 4.159 16 N -0.554 5.554 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.183 1.183 20 H -0.163 1.163 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.112 4.112 24 C -0.153 4.153 25 C 0.062 3.938 26 O -0.321 6.321 27 C -0.143 4.143 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.272 0.728 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -28.229 2.650 15.701 32.410 hybrid contribution 1.147 -0.695 0.697 1.512 sum -27.082 1.955 16.399 31.720 Atomic orbital electron populations 1.21808 0.89715 1.04479 1.03943 1.23342 0.97527 0.79054 1.02313 1.86486 1.22896 1.33818 1.83378 1.24313 0.81441 0.92803 0.71711 1.90694 1.61237 1.43518 1.45841 1.19124 0.81067 0.89108 1.00930 0.85141 1.45536 1.04711 1.75016 1.09762 1.20073 0.89159 0.74074 0.83475 1.90694 1.70185 1.49531 1.32491 1.23234 0.93645 1.07778 1.01433 1.84710 1.04466 1.96629 1.08723 1.22446 0.90275 1.57710 0.97167 0.91776 1.25548 0.94365 0.92936 1.03085 1.70014 1.02538 1.48771 1.34103 0.85880 0.80652 0.80164 0.79767 1.18451 1.18302 1.16257 1.19067 0.98461 0.98672 0.92505 1.21193 1.00489 1.00713 0.92028 1.21299 0.95967 0.94827 0.99073 1.21812 0.97352 0.98398 0.97785 1.18438 0.92105 0.91029 0.92245 1.84795 1.17928 1.35329 1.94065 1.21328 0.97355 0.95431 1.00177 0.88190 0.90600 0.91332 0.92315 0.91031 0.73875 0.85914 0.86841 0.91322 0.84850 0.82473 0.83057 0.72802 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 10.29 71.98 0.74 -0.82 16 2 C 0.05 0.96 6.19 71.98 0.45 1.40 16 3 O -0.35 -8.01 10.13 -51.41 -0.52 -8.53 16 4 C 0.46 12.52 7.27 71.23 0.52 13.04 16 5 O -0.52 -17.93 16.07 21.94 0.35 -17.58 16 6 C 0.21 4.94 2.68 43.50 0.12 5.06 16 7 H 0.13 3.30 7.44 -2.38 -0.02 3.28 16 8 N -0.69 -18.30 4.56 -449.69 -2.05 -20.35 16 9 C 0.55 19.70 7.68 87.66 0.67 20.37 16 10 O -0.55 -24.13 15.52 -3.05 -0.05 -24.18 16 11 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 12 S -0.17 -8.84 18.55 -56.49 -1.05 -9.89 16 13 C -0.53 -31.10 10.04 67.95 0.68 -30.41 16 14 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 15 C 0.05 2.74 5.50 84.86 0.47 3.20 16 16 N -0.92 -56.26 13.97 21.65 0.30 -55.96 16 17 Si 0.91 45.51 27.74 68.60 1.90 47.42 16 18 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 21 C -0.09 -1.56 4.87 -19.88 -0.10 -1.66 16 22 C -0.13 -1.89 9.04 22.28 0.20 -1.68 16 23 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 24 C -0.14 -1.55 9.99 22.37 0.22 -1.33 16 25 C 0.11 1.50 6.70 22.51 0.15 1.65 16 26 O -0.51 -6.10 13.50 -92.37 -1.25 -7.34 16 27 C -0.12 -2.03 9.61 22.37 0.21 -1.82 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.07 1.29 8.13 -2.38 -0.02 1.27 16 33 H 0.42 8.48 6.88 -92.71 -0.64 7.84 16 34 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 35 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 36 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 37 H 0.13 1.78 6.93 -2.91 -0.02 1.76 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.41 0.87 9.06 -74.06 -0.67 0.20 16 41 H 0.14 2.11 8.04 -2.91 -0.02 2.08 16 Total: -1.00 -81.95 374.83 2.38 -79.57 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.26 Total: 14.54 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.00 Total: 2.31 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.75 Total: -76.31 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -1.46 Total: -57.63 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -81.95 2.38 -79.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270288344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.546 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds