Wall clock time and date at job start Tue Mar 31 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99675 * 2 1 4 4 S 1.81401 * 109.47195 * 114.99927 * 3 2 1 5 5 O 1.42101 * 108.57779 * 65.51235 * 4 3 2 6 6 O 1.42098 * 108.57933 * 294.48306 * 4 3 2 7 7 C 1.81403 * 101.92338 * 179.97438 * 4 3 2 8 8 C 1.52997 * 109.47125 * 179.97438 * 7 4 3 9 9 N 1.46499 * 109.47058 * 180.02562 * 8 7 4 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47501 * 60.00015 * 23 21 19 25 25 H 1.48510 * 109.46856 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47250 * 299.99489 * 23 21 19 27 27 H 1.07994 * 120.00022 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00007 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.99776 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47511 * 354.99699 * 3 2 1 31 31 H 1.09007 * 109.47065 * 234.99505 * 3 2 1 32 32 H 1.09004 * 109.46872 * 59.99835 * 7 4 3 33 33 H 1.09000 * 109.46934 * 300.00318 * 7 4 3 34 34 H 1.08999 * 109.46796 * 60.00389 * 8 7 4 35 35 H 1.08995 * 109.47178 * 299.99916 * 8 7 4 36 36 H 0.97003 * 120.00039 * 0.02562 * 9 8 7 37 37 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 38 38 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 41 41 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9917 1.4675 1.5500 5 8 3.9905 0.4574 1.5875 6 8 2.0663 1.5683 2.6236 7 6 3.8042 3.0749 1.3337 8 6 4.6501 3.3891 2.5692 9 7 5.3058 4.6876 2.3948 10 6 6.1076 5.1732 3.3631 11 8 6.2872 4.5334 4.3814 12 6 6.7683 6.4805 3.1872 13 6 6.5653 7.2186 2.0190 14 6 7.1851 8.4396 1.8608 15 6 8.0100 8.9394 2.8557 16 6 8.2208 8.2207 4.0151 17 6 7.6046 6.9893 4.1918 18 8 7.8098 6.2823 5.3297 19 6 8.7134 6.7739 6.2011 20 1 9.1755 7.7324 6.0166 21 6 9.0496 6.0485 7.3345 22 7 8.4865 4.8815 7.5594 23 14 10.3011 6.7300 8.5423 24 1 9.8169 8.0278 9.0774 25 1 10.4835 5.7700 9.6605 26 1 11.5984 6.9335 7.8488 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 -0.0896 31 1 2.7557 1.3251 -0.8418 32 1 3.0483 3.8496 1.2047 33 1 4.4452 3.0424 0.4527 34 1 5.4060 2.6145 2.6986 35 1 4.0088 3.4218 3.4499 36 1 5.1628 5.1978 1.5823 37 1 5.9199 6.8354 1.2426 38 1 7.0275 9.0090 0.9569 39 1 8.4917 9.8969 2.7227 40 1 8.8655 8.6169 4.7856 41 1 8.7219 4.3741 8.3519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272906894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:13 Heat of formation + Delta-G solvation = -75.556208 kcal Electronic energy + Delta-G solvation = -26148.884415 eV Core-core repulsion = 22123.325291 eV Total energy + Delta-G solvation = -4025.559123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.64146 -38.18163 -37.21725 -36.37306 -36.28246 -35.41853 -34.97536 -32.35870 -31.52401 -29.86004 -28.94798 -28.36623 -25.43498 -24.20117 -22.60480 -21.35138 -20.61973 -20.10469 -19.09426 -18.08360 -17.68507 -17.22357 -16.71735 -16.38535 -16.01476 -15.49070 -15.38990 -15.04183 -14.67529 -14.28799 -14.21061 -14.12923 -13.98195 -13.75734 -13.20682 -13.01627 -12.80411 -12.56167 -12.36937 -12.28960 -12.21079 -11.95898 -11.84613 -11.72284 -11.60501 -11.31567 -11.16128 -11.13497 -10.89644 -10.82266 -10.48143 -9.82427 -9.60205 -8.91493 -8.88314 -8.70240 -8.31067 -7.33820 -6.44963 -4.05242 -0.45909 1.67712 1.72474 2.28961 2.42790 3.11766 3.13991 3.16791 3.22223 3.65350 3.69243 3.70118 3.93165 4.06648 4.22799 4.24309 4.54917 4.61871 4.79208 4.96200 5.04623 5.05456 5.15160 5.31342 5.38926 5.48423 5.58809 5.65050 5.78517 5.99945 6.04075 6.05065 6.08609 6.52849 6.64879 6.77086 6.87920 7.02749 7.20927 7.26974 7.66405 7.89674 8.02515 8.93703 9.01780 9.65479 10.68579 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.002506 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.768859 B =11171.219851 C =12742.631070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.166 4.166 3 C -0.581 4.581 4 S 2.426 3.574 5 O -0.927 6.927 6 O -0.925 6.925 7 C -0.632 4.632 8 C 0.137 3.863 9 N -0.740 5.740 10 C 0.553 3.447 11 O -0.496 6.496 12 C -0.228 4.228 13 C -0.038 4.038 14 C -0.232 4.232 15 C -0.050 4.050 16 C -0.237 4.237 17 C 0.188 3.812 18 O -0.122 6.122 19 C -0.405 4.405 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.831 5.831 23 Si 0.942 3.058 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.269 1.269 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 -2.491 -18.332 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.185 4.185 3 C -0.708 4.708 4 S 2.607 3.393 5 O -0.924 6.924 6 O -0.922 6.922 7 C -0.760 4.760 8 C 0.012 3.988 9 N -0.398 5.398 10 C 0.342 3.658 11 O -0.369 6.369 12 C -0.233 4.233 13 C -0.057 4.057 14 C -0.251 4.251 15 C -0.069 4.069 16 C -0.256 4.256 17 C 0.128 3.872 18 O -0.020 6.020 19 C -0.481 4.481 20 H 0.111 0.889 21 C -0.164 4.164 22 N -0.461 5.461 23 Si 0.766 3.234 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.194 1.194 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.229 0.771 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.014 -3.986 -16.502 20.798 hybrid contribution 0.494 1.377 -0.787 1.661 sum -11.520 -2.609 -17.289 20.939 Atomic orbital electron populations 1.24109 0.95597 1.03016 0.96475 1.22242 0.96313 0.95764 1.04206 1.29493 1.14032 1.04546 1.22714 1.08078 0.76470 0.77254 0.77479 1.93613 1.58629 1.54213 1.85967 1.93616 1.63131 1.86186 1.49309 1.30676 1.12974 1.24027 1.08292 1.20755 0.95889 0.88235 0.93964 1.45805 1.51202 1.20682 1.22072 1.18296 0.78599 0.85969 0.82890 1.90973 1.60087 1.58946 1.26932 1.18771 1.09964 0.97526 0.97050 1.20737 0.96583 0.93972 0.94425 1.20447 1.05671 0.98296 1.00695 1.20898 0.95308 0.97844 0.92823 1.21156 1.07385 0.96698 1.00350 1.19265 0.91462 0.90074 0.86363 1.84172 1.50979 1.44328 1.22485 1.21462 1.19593 1.05092 1.01926 0.88856 1.25407 0.98066 0.95345 0.97536 1.70112 1.38769 1.10942 1.26308 0.85781 0.79755 0.78699 0.79167 1.19349 1.20119 1.19355 0.87085 0.87799 0.85310 0.84668 0.84017 0.84326 0.84278 0.90025 0.90054 0.77064 0.87138 0.87288 0.87159 0.85026 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 14.32 29.01 0.42 -0.47 16 2 C -0.17 -1.11 9.52 -36.03 -0.34 -1.45 16 3 C -0.58 -2.94 6.25 36.00 0.22 -2.72 16 4 S 2.43 22.07 4.70 -107.50 -0.51 21.56 16 5 O -0.93 -12.06 18.10 -57.83 -1.05 -13.10 16 6 O -0.93 -12.12 18.10 -57.83 -1.05 -13.16 16 7 C -0.63 -4.85 5.92 37.16 0.22 -4.63 16 8 C 0.14 1.93 5.68 -4.04 -0.02 1.91 16 9 N -0.74 -11.54 5.51 -61.35 -0.34 -11.88 16 10 C 0.55 12.14 7.76 -12.47 -0.10 12.04 16 11 O -0.50 -13.72 15.17 -16.57 -0.25 -13.97 16 12 C -0.23 -4.91 5.89 -104.81 -0.62 -5.52 16 13 C -0.04 -0.64 9.54 -39.20 -0.37 -1.01 16 14 C -0.23 -3.69 10.03 -39.61 -0.40 -4.09 16 15 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 16 C -0.24 -5.03 9.16 -39.44 -0.36 -5.40 16 17 C 0.19 4.66 6.66 -38.60 -0.26 4.41 16 18 O -0.12 -3.60 7.84 -21.08 -0.17 -3.77 16 19 C -0.41 -11.47 9.49 30.90 0.29 -11.18 16 20 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 21 C 0.04 1.25 5.49 -17.51 -0.10 1.16 16 22 N -0.83 -25.23 13.67 55.48 0.76 -24.47 16 23 Si 0.94 20.58 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 28 H 0.10 0.49 7.84 -52.48 -0.41 0.08 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.14 0.36 7.79 -51.93 -0.40 -0.04 16 31 H 0.14 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.14 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.14 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.39 4.53 6.50 -40.82 -0.27 4.26 16 37 H 0.11 1.35 6.40 -52.49 -0.34 1.01 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -41.40 370.31 -8.77 -50.17 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.93 Total: 5.70 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.81 Total: -18.22 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.42 Total: -36.35 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -2.51 Total: -44.00 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 22.07 SS G_CDS: -0.51 Total: 21.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -41.40 -8.77 -50.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272906894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.388 kcal (2) G-P(sol) polarization free energy of solvation -41.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds