Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47146 * 2 1 4 4 C 1.36939 * 120.00063 * 272.60732 * 3 2 1 5 5 H 1.07999 * 119.99908 * 179.39330 * 4 3 2 6 6 C 1.38810 * 120.00024 * 359.39776 * 4 3 2 7 7 N 1.31619 * 119.99962 * 21.08376 * 6 4 3 8 8 Si 1.86797 * 120.00088 * 201.07930 * 6 4 3 9 9 H 1.48503 * 109.46962 * 89.99877 * 8 6 4 10 10 H 1.48499 * 109.47356 * 210.00151 * 8 6 4 11 11 H 1.48505 * 109.46970 * 330.00307 * 8 6 4 12 12 S 1.65598 * 119.99824 * 92.60583 * 3 2 1 13 13 O 1.42101 * 106.40579 * 329.54595 * 12 3 2 14 14 O 1.42098 * 106.40265 * 196.62650 * 12 3 2 15 15 C 1.76199 * 107.21673 * 83.08738 * 12 3 2 16 16 C 1.37836 * 119.78910 * 246.21587 * 15 12 3 17 17 C 1.39609 * 119.78151 * 180.02562 * 16 15 12 18 18 C 1.47722 * 120.19327 * 179.72065 * 17 16 15 19 19 O 1.21469 * 119.99881 * 180.02562 * 18 17 16 20 20 O 1.34713 * 120.00001 * 359.97438 * 18 17 16 21 21 C 1.39533 * 119.61451 * 359.97438 * 17 16 15 22 22 C 1.38175 * 120.09290 * 0.02562 * 21 17 16 23 23 C 1.38433 * 120.00717 * 359.97438 * 22 21 17 24 24 C 1.51429 * 109.69118 * 180.02562 * 23 22 21 25 25 C 1.54331 * 105.18793 * 342.77542 * 24 23 22 26 26 C 1.51403 * 130.25592 * 180.02562 * 22 21 17 27 27 H 1.09000 * 109.46995 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46997 * 299.99863 * 1 2 3 30 30 H 1.09004 * 109.46997 * 240.00137 * 2 1 3 31 31 H 1.08992 * 109.47334 * 120.00028 * 2 1 3 32 32 H 0.96999 * 119.99860 * 179.97438 * 7 6 4 33 33 H 1.07997 * 120.11227 * 359.97438 * 16 15 12 34 34 H 0.96694 * 116.99970 * 180.02562 * 20 18 17 35 35 H 1.07996 * 119.95257 * 179.97438 * 21 17 16 36 36 H 1.08998 * 110.29690 * 101.70589 * 24 23 22 37 37 H 1.09001 * 110.29940 * 223.84469 * 24 23 22 38 38 H 1.09006 * 110.81311 * 268.19525 * 25 24 23 39 39 H 1.08999 * 110.98298 * 144.73913 * 25 24 23 40 40 H 1.08992 * 110.30040 * 316.12363 * 26 22 21 41 41 H 1.08998 * 110.30653 * 78.18267 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1958 2.0448 -1.1847 5 1 2.5464 3.0663 -1.1842 6 6 1.9248 1.4045 -2.3861 7 7 1.1298 0.3557 -2.4083 8 14 2.6882 2.0314 -3.9715 9 1 3.9930 1.3578 -4.1928 10 1 1.7798 1.7367 -5.1087 11 1 2.8987 3.4982 -3.8734 12 16 2.3558 2.1401 1.4327 13 8 1.4729 1.5857 2.3982 14 8 2.4193 3.5303 1.1452 15 6 3.9816 1.6558 1.9091 16 6 4.1639 0.8885 3.0395 17 6 5.4522 0.5053 3.4171 18 6 5.6586 -0.3119 4.6303 19 8 6.7811 -0.6429 4.9559 20 8 4.6021 -0.6890 5.3762 21 6 6.5441 0.9031 2.6449 22 6 6.3492 1.6723 1.5137 23 6 5.0692 2.0489 1.1447 24 6 5.1264 2.8796 -0.1201 25 6 6.5959 3.3362 -0.2379 26 6 7.3507 2.2245 0.5215 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.9402 -0.0915 -3.2479 33 1 3.3131 0.5853 3.6316 34 1 4.7870 -1.2227 6.1611 35 1 7.5431 0.6101 2.9322 36 1 4.8481 2.2745 -0.9829 37 1 4.4676 3.7438 -0.0350 38 1 6.7411 4.3026 0.2450 39 1 6.9102 3.3749 -1.2808 40 1 8.2112 2.6410 1.0448 41 1 7.6700 1.4432 -0.1682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273713213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = -122.534420 kcal Electronic energy + Delta-G solvation = -28673.543940 eV Core-core repulsion = 24645.947688 eV Total energy + Delta-G solvation = -4027.596251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -40.53645 -39.45829 -36.29840 -36.23844 -36.12841 -35.35457 -34.73805 -31.60758 -31.51004 -29.44369 -29.32219 -27.36575 -24.58601 -24.18807 -22.47510 -21.67106 -20.91948 -20.59897 -18.58439 -18.04221 -17.54063 -16.90617 -16.46866 -15.76124 -15.61154 -15.48211 -15.45426 -14.99156 -14.49972 -14.37084 -13.72292 -13.50323 -12.99164 -12.80264 -12.72884 -12.59858 -12.42066 -11.93118 -11.71108 -11.64941 -11.62818 -11.47831 -11.33217 -11.23325 -11.04525 -10.95883 -10.85965 -10.73789 -10.71290 -10.64520 -10.42312 -10.01657 -9.94347 -9.73752 -9.10366 -9.04107 -8.50468 -8.13977 -6.39462 -3.87699 0.70787 1.15812 1.47646 2.48118 2.96768 3.10833 3.19452 3.20771 3.62948 3.99704 4.32669 4.48969 4.60313 4.66269 4.92228 5.01891 5.10429 5.14270 5.18921 5.30598 5.42535 5.60153 5.74518 5.88007 5.93200 5.98069 6.02017 6.12223 6.23328 6.29030 6.37949 6.40952 6.41993 6.57640 6.60082 6.77630 6.89413 6.93200 7.14033 7.31446 7.67894 7.81992 7.84849 8.37445 8.78140 9.15814 10.51940 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.005363 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.240090 B = 5219.237680 C = 6442.971131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.136 3.864 3 N -0.824 5.824 4 C -0.293 4.293 5 H 0.118 0.882 6 C 0.044 3.956 7 N -0.843 5.843 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.266 1.266 12 S 2.610 3.390 13 O -0.980 6.980 14 O -0.972 6.972 15 C -0.677 4.677 16 C 0.028 3.972 17 C -0.164 4.164 18 C 0.535 3.465 19 O -0.524 6.524 20 O -0.508 6.508 21 C -0.007 4.007 22 C -0.141 4.141 23 C 0.055 3.945 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.076 4.076 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.109 0.891 31 H 0.026 0.974 32 H 0.268 0.732 33 H 0.153 0.847 34 H 0.412 0.588 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -0.693 4.395 9.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 N -0.654 5.654 4 C -0.429 4.429 5 H 0.135 0.865 6 C -0.164 4.164 7 N -0.483 5.483 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.701 3.299 13 O -0.969 6.969 14 O -0.961 6.961 15 C -0.755 4.755 16 C 0.009 3.991 17 C -0.166 4.166 18 C 0.381 3.619 19 O -0.414 6.414 20 O -0.319 6.319 21 C -0.025 4.025 22 C -0.142 4.142 23 C 0.054 3.946 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.113 4.113 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.127 0.873 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.271 0.729 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.003 -0.109 4.655 9.259 hybrid contribution 1.251 -0.750 -0.179 1.470 sum 9.254 -0.859 4.476 10.316 Atomic orbital electron populations 1.22032 0.96328 0.99648 1.01914 1.21253 0.94922 0.82237 1.00548 1.53629 1.67996 1.23454 1.20359 1.19632 1.43645 0.97124 0.82547 0.86488 1.25194 0.95987 0.96321 0.98922 1.70204 1.29693 1.21357 1.27086 0.86338 0.79544 0.79744 0.81757 1.20206 1.20880 1.19026 1.06522 0.75239 0.74773 0.73413 1.93447 1.62830 1.79901 1.60769 1.93412 1.87110 1.31225 1.84398 1.31907 1.27436 1.11947 1.04209 1.21190 0.96581 0.88892 0.92457 1.18892 0.95216 1.06096 0.96408 1.20820 0.81756 0.76775 0.82589 1.90851 1.25113 1.54510 1.70971 1.84616 1.39011 1.67563 1.40708 1.20702 0.98208 0.92169 0.91439 1.20656 0.96159 1.00695 0.96681 1.20545 0.91914 0.89413 0.92720 1.21771 0.98112 1.00760 0.94943 1.22314 0.94302 0.98136 1.00880 1.21032 0.96530 0.98061 0.95716 0.89370 0.94567 0.95123 0.87324 0.95550 0.92057 0.82957 0.72918 0.84764 0.86965 0.87410 0.90820 0.90052 0.90712 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.64 37.16 0.36 -2.67 16 2 C 0.14 2.98 5.26 -4.04 -0.02 2.96 16 3 N -0.82 -18.67 2.92 -59.91 -0.17 -18.85 16 4 C -0.29 -6.77 8.08 -15.06 -0.12 -6.89 16 5 H 0.12 2.68 6.59 -52.49 -0.35 2.33 16 6 C 0.04 0.99 5.15 -17.43 -0.09 0.90 16 7 N -0.84 -19.51 7.95 55.49 0.44 -19.07 16 8 Si 0.90 17.72 29.60 -169.99 -5.03 12.69 16 9 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 12 S 2.61 57.52 5.28 -107.50 -0.57 56.95 16 13 O -0.98 -22.88 15.74 -57.17 -0.90 -23.78 16 14 O -0.97 -23.02 15.07 -57.17 -0.86 -23.88 16 15 C -0.68 -13.10 5.91 -39.59 -0.23 -13.34 16 16 C 0.03 0.50 9.11 -39.22 -0.36 0.14 16 17 C -0.16 -2.68 5.87 -105.03 -0.62 -3.30 16 18 C 0.54 7.99 8.27 34.61 0.29 8.28 16 19 O -0.52 -8.59 17.13 -19.24 -0.33 -8.92 16 20 O -0.51 -6.12 12.69 -40.53 -0.51 -6.63 16 21 C -0.01 -0.10 9.59 -39.12 -0.38 -0.48 16 22 C -0.14 -2.18 6.12 -104.23 -0.64 -2.82 16 23 C 0.06 0.98 5.97 -104.05 -0.62 0.36 16 24 C -0.12 -1.95 5.33 -26.83 -0.14 -2.10 16 25 C -0.12 -1.48 7.08 -25.33 -0.18 -1.66 16 26 C -0.08 -0.92 6.77 -26.84 -0.18 -1.11 16 27 H 0.09 2.06 6.37 -51.93 -0.33 1.73 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.66 7.66 -51.93 -0.40 0.27 16 30 H 0.11 2.47 5.66 -51.93 -0.29 2.18 16 31 H 0.03 0.54 7.88 -51.93 -0.41 0.13 16 32 H 0.27 5.93 8.31 -40.82 -0.34 5.59 16 33 H 0.15 2.65 6.87 -52.49 -0.36 2.29 16 34 H 0.41 2.75 9.11 45.56 0.42 3.16 16 35 H 0.13 1.81 7.64 -52.49 -0.40 1.41 16 36 H 0.11 1.88 7.29 -51.93 -0.38 1.51 16 37 H 0.11 1.90 6.61 -51.93 -0.34 1.55 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -29.18 346.57 -9.75 -38.92 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.09 Total: 9.04 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.93 Total: -21.71 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.27 Total: -37.92 kcal Atomic # 8 Polarization: -60.60 SS G_CDS: -2.61 Total: -63.21 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 57.52 SS G_CDS: -0.57 Total: 56.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.18 -9.75 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273713213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.612 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds