Wall clock time and date at job start Tue Mar 31 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47146 * 2 1 4 4 C 1.36939 * 120.00063 * 272.60732 * 3 2 1 5 5 H 1.07999 * 119.99908 * 179.39330 * 4 3 2 6 6 C 1.38810 * 120.00024 * 359.39776 * 4 3 2 7 7 N 1.31619 * 119.99962 * 21.08376 * 6 4 3 8 8 Si 1.86797 * 120.00088 * 201.07930 * 6 4 3 9 9 H 1.48503 * 109.46962 * 89.99877 * 8 6 4 10 10 H 1.48499 * 109.47356 * 210.00151 * 8 6 4 11 11 H 1.48505 * 109.46970 * 330.00307 * 8 6 4 12 12 S 1.65598 * 119.99824 * 92.60583 * 3 2 1 13 13 O 1.42101 * 106.40579 * 329.54595 * 12 3 2 14 14 O 1.42098 * 106.40265 * 196.62650 * 12 3 2 15 15 C 1.76199 * 107.21673 * 83.08738 * 12 3 2 16 16 C 1.37836 * 119.78910 * 246.21587 * 15 12 3 17 17 C 1.39609 * 119.78151 * 180.02562 * 16 15 12 18 18 C 1.47722 * 120.19327 * 179.72065 * 17 16 15 19 19 O 1.21469 * 119.99881 * 180.02562 * 18 17 16 20 20 O 1.34713 * 120.00001 * 359.97438 * 18 17 16 21 21 C 1.39533 * 119.61451 * 359.97438 * 17 16 15 22 22 C 1.38175 * 120.09290 * 0.02562 * 21 17 16 23 23 C 1.38433 * 120.00717 * 359.97438 * 22 21 17 24 24 C 1.51429 * 109.69118 * 180.02562 * 23 22 21 25 25 C 1.54331 * 105.18793 * 342.77542 * 24 23 22 26 26 C 1.51403 * 130.25592 * 180.02562 * 22 21 17 27 27 H 1.09000 * 109.46995 * 59.99936 * 1 2 3 28 28 H 1.08996 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46997 * 299.99863 * 1 2 3 30 30 H 1.09004 * 109.46997 * 240.00137 * 2 1 3 31 31 H 1.08992 * 109.47334 * 120.00028 * 2 1 3 32 32 H 0.96999 * 119.99860 * 179.97438 * 7 6 4 33 33 H 1.07997 * 120.11227 * 359.97438 * 16 15 12 34 34 H 0.96694 * 116.99970 * 180.02562 * 20 18 17 35 35 H 1.07996 * 119.95257 * 179.97438 * 21 17 16 36 36 H 1.08998 * 110.29690 * 101.70589 * 24 23 22 37 37 H 1.09001 * 110.29940 * 223.84469 * 24 23 22 38 38 H 1.09006 * 110.81311 * 268.19525 * 25 24 23 39 39 H 1.08999 * 110.98298 * 144.73913 * 25 24 23 40 40 H 1.08992 * 110.30040 * 316.12363 * 26 22 21 41 41 H 1.08998 * 110.30653 * 78.18267 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1958 2.0448 -1.1847 5 1 2.5464 3.0663 -1.1842 6 6 1.9248 1.4045 -2.3861 7 7 1.1298 0.3557 -2.4083 8 14 2.6882 2.0314 -3.9715 9 1 3.9930 1.3578 -4.1928 10 1 1.7798 1.7367 -5.1087 11 1 2.8987 3.4982 -3.8734 12 16 2.3558 2.1401 1.4327 13 8 1.4729 1.5857 2.3982 14 8 2.4193 3.5303 1.1452 15 6 3.9816 1.6558 1.9091 16 6 4.1639 0.8885 3.0395 17 6 5.4522 0.5053 3.4171 18 6 5.6586 -0.3119 4.6303 19 8 6.7811 -0.6429 4.9559 20 8 4.6021 -0.6890 5.3762 21 6 6.5441 0.9031 2.6449 22 6 6.3492 1.6723 1.5137 23 6 5.0692 2.0489 1.1447 24 6 5.1264 2.8796 -0.1201 25 6 6.5959 3.3362 -0.2379 26 6 7.3507 2.2245 0.5215 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.9402 -0.0915 -3.2479 33 1 3.3131 0.5853 3.6316 34 1 4.7870 -1.2227 6.1611 35 1 7.5431 0.6101 2.9322 36 1 4.8481 2.2745 -0.9829 37 1 4.4676 3.7438 -0.0350 38 1 6.7411 4.3026 0.2450 39 1 6.9102 3.3749 -1.2808 40 1 8.2112 2.6410 1.0448 41 1 7.6700 1.4432 -0.1682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273713213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:06 Heat of formation + Delta-G solvation = -140.599134 kcal Electronic energy + Delta-G solvation = -28674.327285 eV Core-core repulsion = 24645.947688 eV Total energy + Delta-G solvation = -4028.379596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.74283 -40.63896 -38.13302 -37.93153 -37.22255 -36.69067 -36.58132 -33.23311 -32.90881 -31.06278 -30.64342 -28.55887 -26.31400 -25.33567 -23.88722 -23.41956 -22.13172 -21.73082 -20.30060 -19.23473 -19.02500 -18.48375 -18.14633 -17.11092 -16.95124 -16.78619 -16.63871 -16.30600 -16.11323 -16.00438 -15.22934 -14.86004 -14.54856 -14.24011 -14.09179 -13.87420 -13.76322 -13.41736 -13.25385 -13.06260 -12.99502 -12.95604 -12.88103 -12.73412 -12.64154 -12.58387 -12.46599 -12.07438 -12.01860 -11.92097 -11.80136 -11.66695 -11.61694 -11.39772 -10.80801 -10.45297 -9.84963 -9.75155 -8.04507 -5.65316 -0.59779 -0.34181 -0.12701 1.26059 1.53630 1.57250 1.65003 1.91085 2.22466 2.43395 2.65895 2.90519 3.20237 3.32898 3.40353 3.66864 3.81989 4.02896 4.05034 4.11081 4.19632 4.26037 4.38348 4.57558 4.73659 4.82979 4.85696 4.87169 4.93883 5.01266 5.01609 5.08751 5.13580 5.20616 5.28739 5.35881 5.40587 5.44058 5.59444 5.60604 5.93533 6.04035 6.65276 6.87422 7.10067 7.45357 8.88447 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.005363 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.240090 B = 5219.237680 C = 6442.971131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.139 3.861 3 N -0.847 5.847 4 C -0.322 4.322 5 H 0.109 0.891 6 C 0.008 3.992 7 N -0.876 5.876 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.290 1.290 11 H -0.265 1.265 12 S 2.650 3.350 13 O -0.998 6.998 14 O -0.992 6.992 15 C -0.692 4.692 16 C 0.019 3.981 17 C -0.167 4.167 18 C 0.543 3.457 19 O -0.537 6.537 20 O -0.504 6.504 21 C 0.001 3.999 22 C -0.133 4.133 23 C 0.035 3.965 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.073 4.073 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.153 0.847 34 H 0.437 0.563 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -0.917 5.258 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 N -0.679 5.679 4 C -0.454 4.454 5 H 0.127 0.873 6 C -0.195 4.195 7 N -0.517 5.517 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.189 1.189 12 S 2.743 3.257 13 O -0.988 6.988 14 O -0.983 6.983 15 C -0.776 4.776 16 C -0.001 4.001 17 C -0.169 4.169 18 C 0.389 3.611 19 O -0.430 6.430 20 O -0.318 6.318 21 C -0.017 4.017 22 C -0.134 4.134 23 C 0.033 3.967 24 C -0.163 4.163 25 C -0.149 4.149 26 C -0.109 4.109 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.120 0.880 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.299 0.701 35 H 0.178 0.822 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.012 -0.329 5.441 12.287 hybrid contribution 0.373 -0.664 -0.088 0.767 sum 11.385 -0.993 5.353 12.620 Atomic orbital electron populations 1.21987 0.96603 1.00497 1.00303 1.21261 0.94803 0.82003 1.00629 1.53184 1.71817 1.23203 1.19652 1.19550 1.45291 0.97661 0.82936 0.87318 1.25690 0.96152 0.96904 1.00801 1.70280 1.31441 1.22818 1.27187 0.85482 0.78737 0.79177 0.78435 1.19368 1.21638 1.18943 1.03715 0.75430 0.73756 0.72788 1.93435 1.63915 1.80115 1.61335 1.93404 1.87794 1.32230 1.84828 1.31131 1.25266 1.14852 1.06391 1.21203 0.97728 0.89029 0.92111 1.19091 0.94681 1.05941 0.97202 1.20496 0.81885 0.76394 0.82321 1.90853 1.25673 1.55101 1.71329 1.84568 1.37935 1.67685 1.41659 1.21060 0.99059 0.90863 0.90695 1.21084 0.95913 0.99539 0.96857 1.20855 0.92638 0.89989 0.93182 1.21833 1.00795 0.99645 0.94046 1.22372 0.91115 0.98747 1.02698 1.21166 0.96313 0.98241 0.95198 0.91335 0.92585 0.96111 0.87963 0.94487 0.92392 0.82985 0.70068 0.82181 0.87899 0.89574 0.89768 0.87789 0.87710 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 9.64 71.98 0.69 -5.32 16 2 C 0.14 6.26 5.26 86.38 0.45 6.71 16 3 N -0.85 -39.61 2.92 -343.44 -1.00 -40.61 16 4 C -0.32 -15.48 8.08 84.03 0.68 -14.80 16 5 H 0.11 5.23 6.59 -2.91 -0.02 5.21 16 6 C 0.01 0.39 5.15 84.86 0.44 0.83 16 7 N -0.88 -42.17 7.95 21.65 0.17 -41.99 16 8 Si 0.96 37.30 29.60 68.60 2.03 39.33 16 9 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 10 H -0.29 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 12 S 2.65 119.15 5.28 -56.49 -0.30 118.85 16 13 O -1.00 -47.28 15.74 -128.00 -2.02 -49.29 16 14 O -0.99 -48.27 15.07 -128.00 -1.93 -50.20 16 15 C -0.69 -26.52 5.91 22.27 0.13 -26.38 16 16 C 0.02 0.65 9.11 22.51 0.21 0.85 16 17 C -0.17 -5.05 5.87 -20.13 -0.12 -5.17 16 18 C 0.54 14.72 8.27 70.33 0.58 15.30 16 19 O -0.54 -15.93 17.13 19.94 0.34 -15.59 16 20 O -0.50 -10.81 12.69 -56.23 -0.71 -11.52 16 21 C 0.00 0.04 9.59 22.57 0.22 0.25 16 22 C -0.13 -3.69 6.12 -19.61 -0.12 -3.81 16 23 C 0.03 1.19 5.97 -19.49 -0.12 1.08 16 24 C -0.13 -4.04 5.33 30.53 0.16 -3.88 16 25 C -0.11 -2.43 7.08 31.50 0.22 -2.21 16 26 C -0.07 -1.43 6.77 30.53 0.21 -1.23 16 27 H 0.07 3.35 6.37 -2.39 -0.02 3.33 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 29 H 0.02 0.91 7.66 -2.39 -0.02 0.89 16 30 H 0.10 4.82 5.66 -2.39 -0.01 4.80 16 31 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 32 H 0.27 12.21 8.31 -92.71 -0.77 11.44 16 33 H 0.15 5.18 6.87 -2.91 -0.02 5.16 16 34 H 0.44 4.47 9.11 -74.06 -0.67 3.80 16 35 H 0.16 3.56 7.64 -2.91 -0.02 3.54 16 36 H 0.10 3.47 7.29 -2.39 -0.02 3.45 16 37 H 0.09 3.09 6.61 -2.39 -0.02 3.07 16 38 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -63.94 346.57 0.64 -63.30 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.42 Total: 25.50 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.64 Total: -37.77 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -0.83 Total: -82.61 kcal Atomic # 8 Polarization: -122.29 SS G_CDS: -4.32 Total: -126.60 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: 119.15 SS G_CDS: -0.30 Total: 118.85 kcal Total: -63.94 0.64 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273713213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.296 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds