Wall clock time and date at job start Tue Mar 31 2020 22:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47111 * 84.01292 * 3 2 1 5 5 C 1.36939 * 119.99954 * 274.99627 * 4 3 2 6 6 H 1.07998 * 120.00058 * 141.62795 * 5 4 3 7 7 C 1.38810 * 119.99806 * 321.63252 * 5 4 3 8 8 N 1.31627 * 120.00112 * 161.88810 * 7 5 4 9 9 Si 1.86803 * 120.00143 * 341.88582 * 7 5 4 10 10 H 1.48503 * 109.46768 * 95.65202 * 9 7 5 11 11 H 1.48499 * 109.46901 * 215.65066 * 9 7 5 12 12 H 1.48495 * 109.46782 * 335.65299 * 9 7 5 13 13 S 1.65596 * 120.00351 * 94.99972 * 4 3 2 14 14 O 1.42100 * 106.40321 * 30.04935 * 13 4 3 15 15 O 1.42095 * 106.40645 * 162.96799 * 13 4 3 16 16 C 1.76206 * 107.21869 * 276.50952 * 13 4 3 17 17 C 1.38170 * 120.02623 * 114.03849 * 16 13 4 18 18 C 1.38243 * 120.05180 * 179.77154 * 17 16 13 19 19 C 1.50702 * 119.94372 * 180.26175 * 18 17 16 20 20 O 1.42903 * 109.46673 * 270.25047 * 19 18 17 21 21 C 1.42903 * 114.00057 * 179.97438 * 20 19 18 22 22 C 1.38289 * 120.11107 * 0.51142 * 18 17 16 23 23 C 1.38120 * 120.05724 * 359.74200 * 22 18 17 24 24 C 1.38710 * 120.02682 * 294.31990 * 16 13 4 25 25 O 1.35894 * 120.05467 * 0.02562 * 24 16 13 26 26 C 1.42907 * 116.99801 * 180.02562 * 25 24 16 27 27 H 4.40635 * 5.51482 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47136 * 324.00633 * 3 2 1 29 29 H 1.09002 * 109.46727 * 204.00662 * 3 2 1 30 30 H 0.96995 * 119.99706 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.97469 * 0.02904 * 17 16 13 32 32 H 1.08988 * 109.47234 * 30.24730 * 19 18 17 33 33 H 1.09004 * 109.47238 * 150.25655 * 19 18 17 34 34 H 1.08998 * 109.47130 * 180.02562 * 21 20 19 35 35 H 1.08992 * 109.46950 * 300.00367 * 21 20 19 36 36 H 1.08999 * 109.46669 * 60.00284 * 21 20 19 37 37 H 1.08001 * 119.97083 * 179.72674 * 22 18 17 38 38 H 1.07996 * 120.02892 * 179.97438 * 23 22 18 39 39 H 1.08995 * 109.46695 * 299.99218 * 26 25 24 40 40 H 1.08997 * 109.47249 * 59.99833 * 26 25 24 41 41 H 1.09000 * 109.46729 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1432 -1.3737 5 6 3.2658 -1.3890 -1.9267 6 1 3.0139 -1.5484 -2.9647 7 6 3.7226 -2.4471 -1.1530 8 7 3.5200 -3.6864 -1.5474 9 14 4.6251 -2.1122 0.4479 10 1 3.6663 -2.1797 1.5800 11 1 5.6889 -3.1306 0.6388 12 1 5.2372 -0.7603 0.3975 13 16 3.5276 1.2007 -2.2577 14 8 3.9716 2.1779 -1.3264 15 8 4.3209 0.7473 -3.3459 16 6 2.0335 1.8214 -2.9558 17 6 1.5438 3.0511 -2.5596 18 6 0.3742 3.5407 -3.1104 19 6 -0.1546 4.8849 -2.6807 20 8 -1.0268 4.7178 -1.5611 21 6 -1.5853 5.9389 -1.0721 22 6 -0.3141 2.7967 -4.0513 23 6 0.1685 1.5646 -4.4469 24 6 1.3450 1.0732 -3.8994 25 8 1.8214 -0.1393 -4.2861 26 6 1.0606 -0.8539 -5.2622 27 1 -1.0500 -0.0002 -0.0001 28 1 3.0096 -0.8306 0.6039 29 1 3.0088 0.9396 0.4181 30 1 3.8395 -4.4257 -1.0069 31 1 2.0774 3.6322 -1.8220 32 1 0.6778 5.5298 -2.3997 33 1 -0.7044 5.3394 -3.5049 34 1 -2.2347 5.7269 -0.2227 35 1 -0.7823 6.6054 -0.7577 36 1 -2.1646 6.4156 -1.8628 37 1 -1.2300 3.1794 -4.4769 38 1 -0.3696 0.9838 -5.1813 39 1 0.0592 -1.0425 -4.8754 40 1 0.9922 -0.2615 -6.1746 41 1 1.5505 -1.8027 -5.4813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284934883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:59 Heat of formation + Delta-G solvation = -42.147039 kcal Electronic energy + Delta-G solvation = -28593.409932 eV Core-core repulsion = 24569.299539 eV Total energy + Delta-G solvation = -4024.110393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.07906 -38.31374 -36.96413 -36.33419 -36.06185 -34.82333 -32.42022 -31.51115 -31.26721 -31.05783 -27.75583 -26.74246 -26.59343 -24.98673 -23.91802 -23.04319 -21.42681 -18.61729 -18.41351 -18.05039 -17.03896 -16.69484 -16.51046 -16.45249 -16.18063 -15.54621 -15.44188 -15.31925 -15.09937 -14.35392 -14.20808 -13.77968 -13.60410 -13.45843 -12.99070 -12.76544 -12.67150 -12.38465 -12.33295 -12.10403 -11.69836 -11.49260 -11.25169 -11.23426 -11.08923 -10.97063 -10.83687 -10.76332 -10.55027 -10.20465 -10.03482 -9.82698 -9.66230 -9.36393 -9.24881 -8.85341 -8.19025 -8.06741 -6.26151 -3.90586 1.01910 1.40959 1.42318 3.14060 3.28924 3.33294 3.37053 3.44432 3.47209 3.57632 4.01989 4.23447 4.31738 4.55798 4.75418 4.77041 4.95767 4.98395 5.06545 5.12297 5.15765 5.18280 5.22397 5.29408 5.37118 5.42625 5.48719 5.61942 5.71125 5.82826 5.90891 5.91647 6.10659 6.18626 6.26303 6.47080 6.55664 6.78014 6.97181 7.00579 7.46678 7.78940 8.31878 8.50009 9.17935 9.27890 10.84410 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.005089 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.610140 B = 5500.791005 C = 6140.775211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.170 4.170 3 C 0.208 3.792 4 N -0.859 5.859 5 C -0.295 4.295 6 H 0.121 0.879 7 C 0.067 3.933 8 N -0.869 5.869 9 Si 0.863 3.137 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.259 1.259 13 S 2.667 3.333 14 O -0.996 6.996 15 O -0.943 6.943 16 C -0.699 4.699 17 C 0.034 3.966 18 C -0.163 4.163 19 C 0.111 3.889 20 O -0.384 6.384 21 C 0.030 3.970 22 C -0.012 4.012 23 C -0.237 4.237 24 C 0.245 3.755 25 O -0.280 6.280 26 C 0.028 3.972 27 H 0.209 0.791 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.272 0.728 31 H 0.144 0.856 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 13.242 -3.415 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.172 4.172 3 C 0.083 3.917 4 N -0.690 5.690 5 C -0.427 4.427 6 H 0.138 0.862 7 C -0.140 4.140 8 N -0.507 5.507 9 Si 0.691 3.309 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.183 1.183 13 S 2.761 3.239 14 O -0.986 6.986 15 O -0.933 6.933 16 C -0.784 4.784 17 C 0.015 3.985 18 C -0.165 4.165 19 C 0.035 3.965 20 O -0.303 6.303 21 C -0.066 4.066 22 C -0.031 4.031 23 C -0.256 4.256 24 C 0.195 3.805 25 O -0.190 6.190 26 C -0.066 4.066 27 H 0.226 0.774 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.660 13.202 -3.439 16.716 hybrid contribution -0.905 0.183 0.472 1.037 sum -10.564 13.386 -2.966 17.308 Atomic orbital electron populations 1.24597 0.95535 1.02832 1.01030 1.23886 0.94981 0.98755 0.99554 1.18646 0.83689 1.02648 0.86768 1.52949 1.76222 1.19340 1.20486 1.18917 1.42563 0.81830 0.99425 0.86162 1.25349 0.95613 0.94899 0.98161 1.69779 1.43521 0.98134 1.39301 0.87135 0.80487 0.79343 0.83915 1.20067 1.21361 1.18290 1.03321 0.73576 0.72824 0.74168 1.93438 1.79510 1.62476 1.63156 1.93506 1.64913 1.80390 1.54518 1.30502 1.27710 1.05731 1.14427 1.20650 0.93063 0.91578 0.93182 1.19422 0.97479 0.97911 1.01646 1.21237 0.92921 0.93793 0.88568 1.88028 1.63603 1.30332 1.48368 1.22744 0.97746 0.87166 0.98993 1.20941 0.96753 0.92318 0.93060 1.21253 0.98613 0.99206 1.06529 1.18438 0.89773 0.83762 0.88519 1.86416 1.49123 1.27043 1.56434 1.23153 0.96707 0.96999 0.89774 0.77422 0.89458 0.88335 0.91812 0.83836 0.92308 0.92604 0.89637 0.94011 0.94267 0.85538 0.84720 0.92422 0.92833 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.15 19.25 29.55 0.57 -3.58 16 2 C -0.17 -3.60 13.64 -37.12 -0.51 -4.11 16 3 C 0.21 4.69 5.07 -6.83 -0.03 4.65 16 4 N -0.86 -21.16 2.44 -62.78 -0.15 -21.31 16 5 C -0.29 -8.00 9.01 -15.06 -0.14 -8.14 16 6 H 0.12 3.42 6.25 -52.49 -0.33 3.09 16 7 C 0.07 1.85 5.38 -17.43 -0.09 1.76 16 8 N -0.87 -24.76 13.97 55.49 0.78 -23.99 16 9 Si 0.86 20.95 24.78 -169.99 -4.21 16.74 16 10 H -0.27 -6.27 6.77 56.52 0.38 -5.89 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.18 7.08 56.52 0.40 -5.78 16 13 S 2.67 62.40 5.24 -107.50 -0.56 61.84 16 14 O -1.00 -23.26 15.67 -57.18 -0.90 -24.16 16 15 O -0.94 -24.46 16.39 -62.71 -1.03 -25.48 16 16 C -0.70 -13.96 5.92 -39.43 -0.23 -14.19 16 17 C 0.03 0.60 9.20 -39.60 -0.36 0.23 16 18 C -0.16 -2.39 5.51 -104.60 -0.58 -2.96 16 19 C 0.11 1.30 6.06 36.01 0.22 1.51 16 20 O -0.38 -4.97 10.69 -35.23 -0.38 -5.35 16 21 C 0.03 0.26 11.01 101.05 1.11 1.38 16 22 C -0.01 -0.17 9.69 -39.61 -0.38 -0.55 16 23 C -0.24 -3.51 9.04 -39.43 -0.36 -3.86 16 24 C 0.24 4.58 6.63 -39.22 -0.26 4.32 16 25 O -0.28 -5.55 7.23 -29.93 -0.22 -5.77 16 26 C 0.03 0.41 9.81 101.05 0.99 1.40 16 27 H 0.21 3.04 7.80 -54.09 -0.42 2.62 16 28 H 0.09 2.02 2.83 -51.93 -0.15 1.87 16 29 H 0.10 2.01 7.01 -51.93 -0.36 1.64 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.14 2.35 7.33 -52.49 -0.38 1.96 16 32 H 0.06 0.62 8.09 -51.94 -0.42 0.20 16 33 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.14 1.58 6.30 -52.49 -0.33 1.25 16 39 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 40 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 41 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -34.08 360.55 -6.17 -40.25 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.88 Total: 3.93 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.62 Total: -45.30 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -2.52 Total: -60.76 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.21 Total: 16.74 kcal Atomic # 16 Polarization: 62.40 SS G_CDS: -0.56 Total: 61.84 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.08 -6.17 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284934883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.894 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds