Wall clock time and date at job start Tue Mar 31 2020 22:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 110.54691 * 2 1 4 4 O 1.42103 * 110.53951 * 223.24957 * 2 1 3 5 5 C 1.76199 * 104.45226 * 111.62718 * 2 1 3 6 6 C 1.38280 * 119.97071 * 89.99400 * 5 2 1 7 7 C 1.38208 * 120.29357 * 180.02562 * 6 5 2 8 8 C 1.38704 * 120.04770 * 0.29032 * 7 6 5 9 9 C 1.39204 * 119.54420 * 359.33289 * 8 7 6 10 10 C 1.38259 * 119.96773 * 269.97793 * 5 2 1 11 11 N 1.40551 * 119.73836 * 180.54703 * 9 8 7 12 12 C 1.34775 * 121.15825 * 166.45667 * 11 9 8 13 13 O 1.21293 * 120.00080 * 354.19232 * 12 11 9 14 14 C 1.50707 * 119.99858 * 174.19862 * 12 11 9 15 15 C 1.53003 * 109.47053 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.46905 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00394 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99824 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47011 * 90.00228 * 20 18 16 22 22 H 1.48505 * 109.47467 * 209.99881 * 20 18 16 23 23 H 1.48496 * 109.47327 * 330.00407 * 20 18 16 24 24 C 1.47300 * 117.68325 * 346.47096 * 11 9 8 25 25 C 1.53537 * 107.58383 * 41.95393 * 24 11 9 26 26 O 1.35910 * 119.66308 * 179.97438 * 8 7 6 27 27 H 1.09010 * 109.46733 * 308.37657 * 1 2 3 28 28 H 1.09000 * 109.47065 * 68.37138 * 1 2 3 29 29 H 1.09000 * 109.47038 * 188.37789 * 1 2 3 30 30 H 1.07996 * 119.84917 * 0.02562 * 6 5 2 31 31 H 1.07996 * 119.97104 * 180.02562 * 7 6 5 32 32 H 1.07998 * 120.06089 * 0.02562 * 10 5 2 33 33 H 1.08994 * 109.46975 * 299.99622 * 14 12 11 34 34 H 1.09001 * 109.47095 * 59.99911 * 14 12 11 35 35 H 1.09003 * 109.46646 * 299.99665 * 15 14 12 36 36 H 1.09001 * 109.47163 * 59.99420 * 15 14 12 37 37 H 0.96996 * 120.00350 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.83697 * 161.47196 * 24 11 9 39 39 H 1.09003 * 109.83549 * 282.43480 * 24 11 9 40 40 H 1.08998 * 109.58353 * 61.60949 * 25 24 11 41 41 H 1.08996 * 109.58320 * 182.02059 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4260 -1.9890 1.7665 7 6 2.7704 -2.4895 3.0078 8 6 2.9391 -1.6280 4.0817 9 6 2.7729 -0.2585 3.8956 10 6 2.4265 0.2381 2.6491 11 7 2.9542 0.6193 4.9783 12 6 3.0690 1.9484 4.7868 13 8 3.1223 2.3965 3.6610 14 6 3.1312 2.8778 5.9715 15 6 3.2604 4.3213 5.4811 16 6 3.3232 5.2505 6.6658 17 1 3.2754 4.8516 7.6683 18 6 3.4419 6.6102 6.4699 19 7 3.4996 7.0962 5.2492 20 14 3.5191 7.7621 7.9383 21 1 4.9345 7.9486 8.3473 22 1 2.9336 9.0758 7.5684 23 1 2.7507 7.1779 9.0668 24 6 3.0147 0.0359 6.3295 25 6 3.8687 -1.2373 6.2472 26 8 3.2773 -2.1287 5.2991 27 1 -0.3633 0.6381 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 2.2908 -2.6630 0.9336 31 1 2.9041 -3.5527 3.1427 32 1 2.2918 1.3004 2.5083 33 1 2.2212 2.7745 6.5625 34 1 3.9947 2.6248 6.5868 35 1 4.1707 4.4242 4.8904 36 1 2.3972 4.5745 4.8655 37 1 3.5827 8.0527 5.1113 38 1 3.4736 0.7452 7.0184 39 1 2.0098 -0.2141 6.6698 40 1 4.8780 -0.9801 5.9260 41 1 3.9056 -1.7164 7.2256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291426945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:21 Heat of formation + Delta-G solvation = -129.425464 kcal Electronic energy + Delta-G solvation = -27386.450095 eV Core-core repulsion = 23358.555026 eV Total energy + Delta-G solvation = -4027.895070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54568 -40.39630 -38.76865 -38.13506 -36.97510 -36.66491 -35.67233 -33.30966 -32.23646 -31.65220 -30.32143 -29.71118 -27.70687 -25.68956 -24.95221 -23.52471 -22.53704 -20.77619 -19.75028 -19.47238 -18.98991 -18.45650 -17.97082 -17.55351 -17.27080 -17.05003 -16.84763 -16.47774 -16.43768 -16.14473 -15.20302 -15.10086 -14.91820 -14.76937 -14.59560 -14.21382 -14.08674 -13.97813 -13.93422 -13.77776 -13.22015 -13.14565 -13.11261 -12.88800 -12.81959 -12.59604 -12.48376 -12.29544 -12.07579 -11.98906 -11.71255 -11.63923 -11.38673 -11.31778 -10.64081 -10.58361 -9.84378 -9.10658 -8.19025 -6.33864 -0.86097 -0.28021 0.08595 1.38967 1.41701 1.44901 1.47396 1.55889 1.88749 2.09863 2.39091 2.41833 3.02187 3.14584 3.17357 3.30724 3.42879 3.69126 3.93920 3.96784 4.05446 4.08311 4.12325 4.17183 4.30946 4.39253 4.42530 4.53896 4.63823 4.70663 4.74512 4.90217 4.91995 4.98879 5.05625 5.24089 5.47147 5.56053 5.61217 5.81693 5.98109 6.13219 6.14289 6.83125 6.94460 7.37006 8.93675 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.003338 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.009041 B = 8386.299307 C =10336.119193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.501 3.499 3 O -0.991 6.991 4 O -0.965 6.965 5 C -0.674 4.674 6 C -0.012 4.012 7 C -0.143 4.143 8 C 0.142 3.858 9 C 0.042 3.958 10 C -0.053 4.053 11 N -0.564 5.564 12 C 0.507 3.493 13 O -0.553 6.553 14 C -0.110 4.110 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.252 1.252 24 C 0.054 3.946 25 C 0.044 3.956 26 O -0.307 6.307 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.114 0.886 35 H -0.019 1.019 36 H -0.016 1.016 37 H 0.262 0.738 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -25.505 0.278 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.685 3.315 3 O -0.988 6.988 4 O -0.962 6.962 5 C -0.761 4.761 6 C -0.032 4.032 7 C -0.162 4.162 8 C 0.093 3.907 9 C -0.053 4.053 10 C -0.074 4.074 11 N -0.290 5.290 12 C 0.300 3.700 13 O -0.430 6.430 14 C -0.149 4.149 15 C 0.002 3.998 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.176 1.176 24 C -0.067 4.067 25 C -0.030 4.030 26 O -0.220 6.220 27 H 0.158 0.842 28 H 0.173 0.827 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.194 0.806 32 H 0.165 0.835 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.000 1.000 36 H 0.002 0.998 37 H 0.071 0.929 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.293 -24.977 -0.873 25.772 hybrid contribution -0.017 1.377 0.880 1.634 sum -6.310 -23.600 0.007 24.429 Atomic orbital electron populations 1.30010 1.19224 1.14637 1.13673 1.04927 0.80287 0.72977 0.73302 1.93591 1.79908 1.38950 1.86356 1.93518 1.79643 1.61826 1.61247 1.30508 1.21070 1.03217 1.21327 1.21095 0.91735 0.92437 0.97918 1.20924 1.04644 1.01286 0.89394 1.19011 0.95321 0.89216 0.87125 1.18315 1.07139 0.90030 0.89775 1.21436 0.93414 1.01643 0.90912 1.46106 1.69819 1.05331 1.07758 1.21902 0.74034 0.81949 0.92125 1.90607 1.48953 1.76494 1.26943 1.21709 1.05380 0.93484 0.94332 1.18726 0.94841 0.90663 0.95530 1.21667 1.50481 0.92069 0.93681 0.90083 1.26150 0.94643 1.00764 0.98884 1.70190 1.51005 1.13521 1.23096 0.85314 0.78635 0.77379 0.78860 1.19810 1.21464 1.17551 1.23173 1.04133 0.97478 0.81868 1.23743 0.95311 0.89586 0.94399 1.86042 1.75852 1.39094 1.20981 0.84207 0.82652 0.81523 0.80415 0.80567 0.83495 0.86809 0.86760 1.00036 0.99793 0.92888 0.84738 0.87334 0.91238 0.80981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -7.21 10.80 113.37 1.22 -5.99 16 2 S 2.50 59.92 5.80 -56.49 -0.33 59.59 16 3 O -0.99 -36.39 17.13 -127.65 -2.19 -38.58 16 4 O -0.97 -25.61 17.12 -127.65 -2.19 -27.80 16 5 C -0.67 -17.70 5.66 22.28 0.13 -17.58 16 6 C -0.01 -0.25 9.46 22.27 0.21 -0.04 16 7 C -0.14 -2.73 9.97 22.37 0.22 -2.51 16 8 C 0.14 3.38 6.52 22.61 0.15 3.53 16 9 C 0.04 1.30 6.33 38.05 0.24 1.54 16 10 C -0.05 -1.80 8.36 22.36 0.19 -1.62 16 11 N -0.56 -16.85 3.01 -627.72 -1.89 -18.74 16 12 C 0.51 19.97 7.59 87.66 0.67 20.64 16 13 O -0.55 -27.66 12.85 -3.07 -0.04 -27.70 16 14 C -0.11 -4.17 4.26 29.85 0.13 -4.05 16 15 C 0.04 2.18 4.26 29.85 0.13 2.31 16 16 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 17 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 19 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 20 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 24 C 0.05 0.94 6.44 86.41 0.56 1.49 16 25 C 0.04 0.61 7.18 72.16 0.52 1.13 16 26 O -0.31 -5.82 10.32 -92.53 -0.95 -6.78 16 27 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.18 2.32 7.56 -2.91 -0.02 2.30 16 31 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.15 6.16 4.68 -4.02 -0.02 6.15 16 33 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.11 3.62 7.34 -2.39 -0.02 3.60 16 35 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 36 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.13 1.84 6.28 -2.39 -0.01 1.82 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -94.94 354.93 0.83 -94.11 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.06 Total: 10.27 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 5.05 Total: -30.69 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.61 Total: -77.90 kcal Atomic # 8 Polarization: -95.48 SS G_CDS: -5.37 Total: -100.85 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 59.92 SS G_CDS: -0.33 Total: 59.59 kcal Total: -94.94 0.83 -94.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291426945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.317 kcal (2) G-P(sol) polarization free energy of solvation -94.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds