Wall clock time and date at job start Tue Mar 31 2020 22:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81397 * 109.47097 * 2 1 4 4 O 1.42098 * 110.54242 * 68.37515 * 3 2 1 5 5 O 1.42093 * 110.54261 * 291.62041 * 3 2 1 6 6 C 1.76203 * 104.44960 * 179.97438 * 3 2 1 7 7 C 1.38375 * 119.92782 * 269.97705 * 6 3 2 8 8 C 1.38339 * 120.29160 * 179.97438 * 7 6 3 9 9 C 1.37978 * 120.14670 * 359.79109 * 8 7 6 10 10 C 1.39562 * 119.85101 * 0.48475 * 9 8 7 11 11 C 1.47845 * 120.14331 * 179.77327 * 10 9 8 12 12 O 1.21553 * 119.99549 * 172.84655 * 11 10 9 13 13 N 1.34773 * 119.99841 * 352.83766 * 11 10 9 14 14 C 1.47581 * 134.48625 * 174.46249 * 13 11 10 15 15 C 1.53945 * 86.11710 * 155.36091 * 14 13 11 16 16 O 1.42898 * 113.74437 * 269.15630 * 15 14 13 17 17 C 1.50701 * 113.74161 * 137.94771 * 15 14 13 18 18 H 1.07997 * 120.00470 * 1.93007 * 17 15 14 19 19 C 1.37882 * 119.99532 * 181.92655 * 17 15 14 20 20 N 1.31512 * 120.00233 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99590 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46945 * 269.99728 * 21 19 17 23 23 H 1.48498 * 109.47355 * 30.00115 * 21 19 17 24 24 H 1.48499 * 109.46844 * 150.00193 * 21 19 17 25 25 C 1.47807 * 134.46079 * 354.33528 * 13 11 10 26 26 C 1.37939 * 119.92630 * 89.99904 * 6 3 2 27 27 H 1.08995 * 109.47096 * 60.00451 * 1 2 3 28 28 H 1.09010 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47341 * 299.99711 * 1 2 3 30 30 H 1.09000 * 109.47197 * 239.99795 * 2 1 3 31 31 H 1.09005 * 109.47029 * 120.00119 * 2 1 3 32 32 H 1.08001 * 119.85618 * 0.02562 * 7 6 3 33 33 H 1.08005 * 119.93026 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.07820 * 180.23412 * 9 8 7 35 35 H 1.08999 * 113.77164 * 41.06131 * 14 13 11 36 36 H 1.09007 * 113.87439 * 269.67043 * 14 13 11 37 37 H 0.96701 * 114.00371 * 178.07173 * 16 15 14 38 38 H 0.97007 * 119.99927 * 180.02562 * 20 19 17 39 39 H 1.08996 * 113.76911 * 90.37474 * 25 13 11 40 40 H 1.08999 * 113.83791 * 318.91199 * 25 13 11 41 41 H 1.08001 * 120.07335 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 6 3.8899 1.5560 0.0008 7 6 4.5771 1.4962 1.2003 8 6 5.9551 1.3746 1.2097 9 6 6.6530 1.3078 0.0213 10 6 5.9665 1.3733 -1.1921 11 6 6.7082 1.3074 -2.4693 12 8 6.1026 1.2335 -3.5206 13 7 8.0558 1.3293 -2.4678 14 6 9.0936 1.1809 -3.5065 15 6 10.0024 1.9935 -2.5664 16 8 9.9500 3.4035 -2.7922 17 6 11.4108 1.4647 -2.4773 18 1 11.7054 0.6104 -3.0687 19 6 12.3233 2.0717 -1.6407 20 7 11.9646 3.1117 -0.9201 21 14 14.0693 1.4167 -1.5307 22 1 14.1461 0.3893 -0.4612 23 1 14.4526 0.8083 -2.8300 24 1 14.9972 2.5318 -1.2134 25 6 9.0870 1.5141 -1.4252 26 6 4.5759 1.4956 -1.1944 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0353 1.5439 2.1333 33 1 6.4856 1.3281 2.1493 34 1 7.7284 1.2091 0.0299 35 1 8.8576 1.6923 -4.4397 36 1 9.4238 0.1530 -3.6566 37 1 10.4969 3.9199 -2.1845 38 1 12.6067 3.5390 -0.3318 39 1 9.4141 0.5837 -0.9611 40 1 8.8458 2.2910 -0.6997 41 1 4.0383 1.5423 -2.1300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332051304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:06 Heat of formation + Delta-G solvation = -82.582646 kcal Electronic energy + Delta-G solvation = -27016.556072 eV Core-core repulsion = 22990.692260 eV Total energy + Delta-G solvation = -4025.863813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20080 -38.72674 -37.32991 -37.19045 -36.13224 -34.11294 -33.54746 -32.31330 -31.79614 -31.25072 -28.60375 -25.71247 -25.61818 -24.57511 -23.50947 -22.86947 -20.51989 -19.40018 -18.81575 -17.85993 -17.30590 -16.69836 -16.54938 -16.34334 -15.69559 -15.63717 -15.12632 -14.90346 -14.78828 -14.42793 -14.18799 -14.06080 -13.71556 -13.41183 -12.97734 -12.89144 -12.77043 -12.55955 -12.29539 -12.26855 -12.17053 -12.04875 -11.96249 -11.72031 -11.65300 -11.23558 -11.12410 -11.00437 -10.70794 -10.57782 -10.38805 -9.78776 -9.53277 -9.36556 -9.15841 -8.86315 -8.50699 -7.97727 -6.47835 -4.58584 -0.20049 0.58310 0.94341 2.62724 2.86876 3.08382 3.17625 3.20389 3.33069 3.56739 3.85489 3.86523 4.11568 4.22664 4.37179 4.58545 4.69774 4.76001 4.78592 4.91375 4.98978 5.13124 5.26322 5.28546 5.36029 5.50206 5.50853 5.68595 5.76645 5.81893 6.03884 6.09397 6.15263 6.26512 6.30539 6.45386 6.50869 6.66805 6.97829 7.54387 7.72046 8.28200 8.45177 8.56625 9.12976 9.33857 10.58853 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.002617 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.551837 B =10696.770069 C =11171.872455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.610 4.610 3 S 2.499 3.501 4 O -0.937 6.937 5 O -0.932 6.932 6 C -0.674 4.674 7 C -0.010 4.010 8 C -0.146 4.146 9 C -0.042 4.042 10 C -0.137 4.137 11 C 0.568 3.432 12 O -0.555 6.555 13 N -0.625 5.625 14 C 0.113 3.887 15 C 0.241 3.759 16 O -0.571 6.571 17 C -0.538 4.538 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.271 1.271 24 H -0.283 1.283 25 C 0.067 3.933 26 C 0.028 3.972 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 -7.509 7.710 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.678 3.322 4 O -0.934 6.934 5 O -0.929 6.929 6 C -0.760 4.760 7 C -0.029 4.029 8 C -0.165 4.165 9 C -0.060 4.060 10 C -0.141 4.141 11 C 0.358 3.642 12 O -0.436 6.436 13 N -0.358 5.358 14 C -0.008 4.008 15 C 0.199 3.801 16 O -0.382 6.382 17 C -0.576 4.576 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.195 1.195 24 H -0.209 1.209 25 C -0.055 4.055 26 C 0.009 3.991 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.503 -6.818 6.807 19.110 hybrid contribution 2.057 -0.859 0.789 2.365 sum -14.446 -7.677 7.596 18.037 Atomic orbital electron populations 1.21563 0.90251 1.05248 1.03742 1.30210 1.07089 1.24312 1.12301 1.05441 0.74238 0.77674 0.74815 1.93564 1.83356 1.71967 1.44559 1.93598 1.83189 1.71814 1.44284 1.30476 1.25739 1.20603 0.99214 1.21094 0.95055 0.90368 0.96422 1.21310 0.94126 1.02339 0.98677 1.22470 1.02156 0.89735 0.91668 1.20205 0.94106 1.05746 0.94045 1.17761 0.81004 0.77362 0.88069 1.90727 1.67682 1.52529 1.32677 1.50099 1.02733 1.68450 1.14500 1.23505 0.83505 1.00102 0.93695 1.19833 0.91663 0.80779 0.87820 1.86083 1.72493 1.17745 1.61915 1.21486 0.94902 1.15512 1.25735 0.90947 1.25079 0.99610 0.94358 0.93996 1.69397 1.36217 1.21267 1.26821 0.86324 0.82824 0.78601 0.78736 1.20319 1.19515 1.20870 1.24547 0.85528 1.00456 0.95013 1.21034 0.93472 0.87450 0.97178 0.90665 0.89731 0.90781 0.84417 0.84599 0.83876 0.84295 0.82900 0.90781 0.89259 0.75294 0.91593 0.89488 0.90646 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.92 37.16 0.37 -0.48 16 2 C -0.61 -3.85 6.70 37.16 0.25 -3.60 16 3 S 2.50 26.46 5.16 -107.50 -0.55 25.91 16 4 O -0.94 -11.82 17.11 -57.54 -0.98 -12.81 16 5 O -0.93 -13.18 17.12 -57.54 -0.99 -14.17 16 6 C -0.67 -8.36 5.65 -39.64 -0.22 -8.59 16 7 C -0.01 -0.11 9.47 -39.49 -0.37 -0.49 16 8 C -0.15 -1.71 10.03 -39.64 -0.40 -2.11 16 9 C -0.04 -0.61 9.08 -39.18 -0.36 -0.97 16 10 C -0.14 -2.33 5.87 -104.97 -0.62 -2.95 16 11 C 0.57 11.64 7.99 -12.33 -0.10 11.54 16 12 O -0.56 -12.77 17.10 5.32 0.09 -12.68 16 13 N -0.63 -12.80 3.60 -179.23 -0.64 -13.44 16 14 C 0.11 2.38 8.23 -2.97 -0.02 2.35 16 15 C 0.24 5.50 1.40 -90.84 -0.13 5.38 16 16 O -0.57 -14.26 13.48 -35.23 -0.48 -14.73 16 17 C -0.54 -12.83 8.61 -34.44 -0.30 -13.13 16 18 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.07 1.72 5.40 -17.82 -0.10 1.63 16 20 N -0.90 -21.71 11.20 55.43 0.62 -21.09 16 21 Si 0.91 18.69 29.54 -169.99 -5.02 13.67 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.07 1.33 5.60 -2.84 -0.02 1.32 16 26 C 0.03 0.43 9.01 -39.19 -0.35 0.08 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.14 1.21 7.56 -52.49 -0.40 0.81 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.15 2.23 4.11 -52.49 -0.22 2.01 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 37 H 0.39 9.85 6.60 45.56 0.30 10.15 16 38 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 39 H 0.09 1.60 7.99 -51.93 -0.42 1.19 16 40 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 41 H 0.15 2.33 7.18 -52.49 -0.38 1.95 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -32.53 360.06 -9.28 -41.80 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.39 Total: 12.13 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.36 Total: -10.02 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.02 Total: -34.53 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -2.35 Total: -54.39 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 16 Polarization: 26.46 SS G_CDS: -0.55 Total: 25.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.53 -9.28 -41.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332051304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.779 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds