Wall clock time and date at job start Tue Mar 31 2020 22:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34748 * 117.00609 * 2 1 4 4 O 1.21518 * 119.99645 * 359.97438 * 3 2 1 5 5 C 1.47387 * 120.00356 * 179.97438 * 3 2 1 6 6 C 1.39767 * 120.19847 * 0.02562 * 5 3 2 7 7 C 1.37769 * 119.90417 * 179.72287 * 6 5 3 8 8 C 1.38566 * 120.30832 * 0.51014 * 7 6 5 9 9 C 1.50694 * 119.80116 * 179.76044 * 8 7 6 10 10 N 1.46499 * 109.47550 * 269.72911 * 9 8 7 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 S 1.80999 * 109.46903 * 179.72354 * 13 11 10 15 15 C 1.76200 * 99.99730 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99941 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00384 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47506 * 89.99666 * 19 17 15 21 21 H 1.48498 * 109.47217 * 210.00061 * 19 17 15 22 22 H 1.48502 * 109.46767 * 329.99807 * 19 17 15 23 23 C 1.38053 * 120.39826 * 359.48832 * 8 7 6 24 24 C 1.38708 * 120.09196 * 0.25121 * 23 8 7 25 25 O 1.35641 * 120.15275 * 179.97438 * 24 23 8 26 26 C 1.42901 * 117.00257 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.46372 * 59.99879 * 1 2 3 28 28 H 1.08995 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47068 * 300.01022 * 1 2 3 30 30 H 1.07998 * 120.04869 * 359.97438 * 6 5 3 31 31 H 1.07994 * 119.84572 * 180.27285 * 7 6 5 32 32 H 1.08998 * 109.47333 * 149.72505 * 9 8 7 33 33 H 1.09002 * 109.47271 * 29.72939 * 9 8 7 34 34 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 35 35 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 36 36 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 37 37 H 0.97002 * 120.00288 * 179.97438 * 18 17 15 38 38 H 1.08000 * 119.95208 * 180.23369 * 23 8 7 39 39 H 1.09000 * 109.47051 * 59.99224 * 26 25 24 40 40 H 1.08996 * 109.47060 * 179.97438 * 26 25 24 41 41 H 1.09007 * 109.46720 * 299.99755 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2005 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5358 1.2776 0.0006 6 6 4.3010 0.1080 0.0006 7 6 5.6764 0.1871 -0.0047 8 6 6.3059 1.4216 0.0007 9 6 7.8110 1.4947 0.0003 10 7 8.2992 1.5186 1.3814 11 6 9.6228 1.5835 1.6273 12 8 10.4097 1.6217 0.7052 13 6 10.1252 1.6019 3.0480 14 16 11.9333 1.6839 3.0474 15 6 12.2396 1.6931 4.7826 16 1 11.4135 1.6534 5.4771 17 6 13.5428 1.7504 5.2569 18 7 14.5498 1.7973 4.4105 19 14 13.8676 1.7595 7.0965 20 1 14.0167 0.3633 7.5798 21 1 15.1150 2.5156 7.3751 22 1 12.7294 2.4069 7.7969 23 6 5.5624 2.5848 0.0007 24 6 4.1766 2.5245 0.0006 25 8 3.4450 3.6667 0.0012 26 6 4.1671 4.8998 0.0013 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 3.8148 -0.8563 0.0006 31 1 6.2667 -0.7172 -0.0091 32 1 8.1306 2.4012 -0.5137 33 1 8.2171 0.6234 -0.5135 34 1 7.6697 1.4885 2.1188 35 1 9.7221 2.4729 3.5647 36 1 9.8027 0.6948 3.5591 37 1 15.4605 1.8378 4.7420 38 1 6.0605 3.5431 0.0011 39 1 4.7939 4.9538 -0.8888 40 1 3.4639 5.7326 0.0012 41 1 4.7944 4.9534 0.8912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337964020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:56 Heat of formation + Delta-G solvation = -155.492901 kcal Electronic energy + Delta-G solvation = -25480.636914 eV Core-core repulsion = 21451.611476 eV Total energy + Delta-G solvation = -4029.025438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92084 -40.86002 -40.43755 -38.75023 -37.40103 -35.92615 -34.56921 -33.16202 -31.34799 -30.94204 -28.93353 -28.42087 -27.67788 -26.97155 -23.82347 -23.32090 -21.94987 -21.80993 -19.91349 -19.33541 -18.54060 -18.04163 -17.77065 -17.45826 -17.31126 -16.91647 -16.86118 -16.67444 -16.47003 -15.84026 -15.67935 -15.30420 -14.95850 -14.64716 -14.47818 -14.38635 -14.28247 -14.08368 -13.52088 -13.30318 -13.15246 -13.14407 -12.97448 -12.87886 -12.61044 -12.57900 -12.30196 -12.12279 -11.78915 -11.72269 -11.49513 -11.13044 -11.05068 -10.26465 -10.18613 -10.15249 -9.40546 -8.64474 -8.33468 -6.10909 -0.52592 0.28531 1.25800 1.38542 1.43283 1.50548 1.60476 1.61742 1.67836 2.17668 2.26635 2.30596 2.71404 3.00755 3.33447 3.34377 3.65761 3.78917 3.89458 4.00743 4.15644 4.22176 4.31613 4.32898 4.33138 4.34121 4.38498 4.50769 4.54430 4.63898 4.70095 4.71867 4.78476 4.96957 5.11309 5.31092 5.34360 5.39003 5.43609 5.57764 6.21228 6.22236 6.46725 6.71113 7.08206 7.22037 8.75531 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.001885 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.246826 B =14849.887322 C =14991.860518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.507 3.493 4 O -0.525 6.525 5 C -0.181 4.181 6 C -0.015 4.015 7 C -0.147 4.147 8 C -0.021 4.021 9 C 0.158 3.842 10 N -0.709 5.709 11 C 0.538 3.462 12 O -0.562 6.562 13 C -0.131 4.131 14 S -0.149 6.149 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.259 1.259 23 C -0.201 4.201 24 C 0.177 3.823 25 O -0.311 6.311 26 C 0.012 3.988 27 H 0.060 0.940 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.153 0.847 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.847 -2.306 -8.809 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.353 3.647 4 O -0.415 6.415 5 C -0.183 4.183 6 C -0.033 4.033 7 C -0.165 4.165 8 C -0.022 4.022 9 C 0.035 3.965 10 N -0.363 5.363 11 C 0.324 3.676 12 O -0.440 6.440 13 C -0.282 4.282 14 S 0.078 5.922 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.819 3.181 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.183 1.183 23 C -0.220 4.220 24 C 0.130 3.870 25 O -0.223 6.223 26 C -0.083 4.083 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.185 0.815 31 H 0.175 0.825 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.171 0.829 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -27.832 -1.896 -10.386 29.768 hybrid contribution -0.684 0.411 2.150 2.293 sum -28.517 -1.485 -8.236 29.720 Atomic orbital electron populations 1.23551 0.74425 1.05833 1.02415 1.86522 1.25080 1.31623 1.84234 1.21150 0.89254 0.81630 0.72657 1.90866 1.67193 1.36806 1.46645 1.18675 0.89359 0.92908 1.17367 1.21520 0.93417 0.97360 0.90982 1.21257 0.94238 0.98020 1.03032 1.19856 0.94207 0.93249 0.94900 1.20299 0.88839 1.03953 0.83452 1.45734 1.05835 1.75659 1.09096 1.20003 0.82553 0.75035 0.90013 1.90708 1.56400 1.50035 1.46832 1.23379 1.01017 1.06885 0.96899 1.85555 0.99081 1.96849 1.10703 1.23207 0.95856 1.58622 0.91701 0.89923 1.26107 0.94749 0.93823 1.04474 1.70179 0.99667 1.47942 1.36909 0.84974 0.78088 0.78711 0.76340 1.19329 1.20392 1.18261 1.21259 0.91180 1.00704 1.08895 1.19154 0.90177 0.85968 0.91742 1.86292 1.35848 1.13474 1.86640 1.23466 0.98924 0.83115 1.02751 0.92081 0.84646 0.92165 0.81532 0.82519 0.90463 0.89708 0.74770 0.87258 0.87084 0.92021 0.82928 0.91066 0.86640 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.05 9.82 -56.59 -0.56 -6.60 16 3 C 0.51 11.14 7.89 70.23 0.55 11.69 16 4 O -0.52 -14.66 14.95 26.78 0.40 -14.26 16 5 C -0.18 -3.47 5.88 -20.02 -0.12 -3.59 16 6 C -0.01 -0.20 9.61 22.53 0.22 0.02 16 7 C -0.15 -1.88 9.67 22.24 0.22 -1.66 16 8 C -0.02 -0.32 5.25 -19.83 -0.10 -0.43 16 9 C 0.16 2.97 5.79 85.63 0.50 3.46 16 10 N -0.71 -15.77 5.55 -466.79 -2.59 -18.36 16 11 C 0.54 18.30 7.85 87.66 0.69 18.99 16 12 O -0.56 -24.39 15.86 -3.04 -0.05 -24.44 16 13 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 14 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 15 C -0.55 -30.61 9.50 67.95 0.65 -29.96 16 16 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 17 C 0.01 0.75 5.49 84.86 0.47 1.21 16 18 N -0.91 -55.24 13.22 21.65 0.29 -54.96 16 19 Si 1.00 43.02 29.55 68.60 2.03 45.04 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 C -0.20 -3.18 8.67 22.34 0.19 -2.99 16 24 C 0.18 3.46 6.70 22.86 0.15 3.61 16 25 O -0.31 -6.61 8.57 -68.63 -0.59 -7.20 16 26 C 0.01 0.15 9.81 113.37 1.11 1.26 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.17 1.53 7.61 -2.91 -0.02 1.50 16 31 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.42 6.94 8.46 -92.71 -0.78 6.16 16 35 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.15 2.00 6.30 -2.91 -0.02 1.98 16 39 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 40 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 Total: -1.00 -81.92 375.13 4.21 -77.71 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.29 Total: 13.59 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.15 Total: -1.31 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.30 Total: -73.31 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.79 Total: -52.50 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -81.92 4.21 -77.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337964020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.788 kcal (2) G-P(sol) polarization free energy of solvation -81.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds