Wall clock time and date at job start Tue Mar 31 2020 22:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99861 * 2 1 4 4 O 1.20821 * 119.99952 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00044 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47453 * 305.00580 * 5 3 2 7 7 C 1.53007 * 109.47157 * 64.99942 * 5 3 2 8 8 N 1.46490 * 109.47443 * 179.06737 * 7 5 3 9 9 C 1.34780 * 120.00459 * 182.56129 * 8 7 5 10 10 O 1.21549 * 119.99165 * 359.97438 * 9 8 7 11 11 C 1.47853 * 120.00196 * 179.97438 * 9 8 7 12 12 C 1.39671 * 120.10158 * 359.71887 * 11 9 8 13 13 C 1.38052 * 120.03605 * 179.74285 * 12 11 9 14 14 C 1.38180 * 120.24110 * 0.56293 * 13 12 11 15 15 C 1.39180 * 120.20457 * 359.69211 * 14 13 12 16 16 S 1.76200 * 120.02074 * 180.02562 * 15 14 13 17 17 C 1.76196 * 100.00123 * 267.04616 * 16 15 14 18 18 H 1.08009 * 119.99976 * 5.20289 * 17 16 15 19 19 C 1.38725 * 120.00291 * 185.19948 * 17 16 15 20 20 N 1.31626 * 120.00373 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99655 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47142 * 89.99869 * 21 19 17 23 23 H 1.48504 * 109.46670 * 210.00039 * 21 19 17 24 24 H 1.48501 * 109.47229 * 329.99700 * 21 19 17 25 25 C 1.38875 * 119.95768 * 0.02631 * 15 14 13 26 26 O 1.42891 * 109.47328 * 184.99936 * 5 3 2 27 27 C 1.42908 * 114.00404 * 111.27756 * 26 5 3 28 28 H 1.09007 * 109.46786 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47090 * 300.00233 * 1 2 3 30 30 H 1.09000 * 109.47006 * 60.00291 * 1 2 3 31 31 H 1.09001 * 109.47104 * 299.06809 * 7 5 3 32 32 H 1.09003 * 109.46491 * 59.06276 * 7 5 3 33 33 H 0.97005 * 119.99821 * 2.55563 * 8 7 5 34 34 H 1.08000 * 119.98342 * 0.02562 * 12 11 9 35 35 H 1.07997 * 119.87596 * 180.25175 * 13 12 11 36 36 H 1.08001 * 119.89335 * 179.71655 * 14 13 12 37 37 H 0.96997 * 119.99999 * 180.02562 * 20 19 17 38 38 H 1.07996 * 120.11757 * 180.02562 * 25 15 14 39 39 H 1.08997 * 109.46389 * 54.18118 * 27 26 5 40 40 H 1.08993 * 109.47385 * 174.18173 * 27 26 5 41 41 H 1.09002 * 109.46844 * 294.18760 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9598 0.7054 0.8426 7 6 4.1081 0.6926 -1.3065 8 7 5.5698 0.7896 -1.3155 9 6 6.2655 0.3832 -2.3960 10 8 5.6800 -0.0642 -3.3627 11 6 7.7407 0.4816 -2.4053 12 6 8.4151 1.0009 -1.2979 13 6 9.7929 1.0873 -1.3059 14 6 10.5098 0.6721 -2.4118 15 6 9.8477 0.1580 -3.5229 16 16 10.7667 -0.3705 -4.9303 17 6 10.7390 1.1088 -5.8870 18 1 10.3064 2.0093 -5.4766 19 6 11.2729 1.1169 -7.1674 20 7 11.2518 2.2219 -7.8823 21 14 12.0206 -0.4408 -7.8774 22 1 10.9710 -1.2143 -8.5881 23 1 13.1013 -0.0812 -8.8304 24 1 12.5840 -1.2651 -6.7782 25 6 8.4623 0.0619 -3.5216 26 8 3.9717 2.6401 0.1179 27 6 4.5960 2.9562 1.3639 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8129 -0.3535 -1.3881 32 1 3.7015 1.2516 -2.1493 33 1 6.0369 1.1464 -0.5439 34 1 7.8588 1.3308 -0.4330 35 1 10.3120 1.4854 -0.4466 36 1 11.5873 0.7465 -2.4139 37 1 11.6248 2.2274 -8.7777 38 1 7.9459 -0.3370 -4.3821 39 1 5.4282 2.2738 1.5366 40 1 4.9662 3.9809 1.3352 41 1 3.8695 2.8547 2.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347840552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:23 Heat of formation + Delta-G solvation = -134.380105 kcal Electronic energy + Delta-G solvation = -25904.301522 eV Core-core repulsion = 21876.191603 eV Total energy + Delta-G solvation = -4028.109919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13536 -40.04461 -38.67038 -37.85174 -36.74810 -34.95710 -32.49796 -31.84005 -30.71614 -30.34235 -28.08099 -26.90500 -25.68060 -24.97287 -23.18810 -22.26384 -21.56970 -20.53408 -18.74331 -18.18653 -17.75087 -17.51718 -17.09704 -16.51161 -16.07415 -15.92116 -15.40558 -15.19399 -15.08850 -14.94361 -14.72846 -14.39354 -13.82473 -13.68233 -13.53787 -13.45203 -13.24674 -12.92003 -12.55333 -12.39853 -12.32109 -11.97021 -11.79973 -11.37226 -11.26734 -11.24885 -11.21794 -11.09910 -10.65371 -10.34432 -9.96804 -9.85504 -9.33422 -9.21226 -9.08473 -8.68135 -8.17666 -7.14222 -6.32691 -4.08569 1.06507 1.56157 1.60579 1.96429 2.81781 2.89826 3.01946 3.25131 3.27543 3.38477 3.49746 4.03609 4.08952 4.16338 4.25237 4.26180 4.67676 4.70855 4.76108 4.77622 4.85813 4.89066 4.99195 5.05979 5.10020 5.12926 5.14784 5.21959 5.39445 5.63459 5.75723 5.83623 5.87594 6.12465 6.15861 6.32141 6.47194 6.53589 6.80276 7.07263 7.24151 7.33745 7.91390 8.17264 8.44907 9.11058 10.76711 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.002241 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.640784 B =12491.361910 C =13056.526881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.449 3.551 4 O -0.482 6.482 5 C 0.089 3.911 6 H 0.111 0.889 7 C 0.124 3.876 8 N -0.727 5.727 9 C 0.568 3.432 10 O -0.529 6.529 11 C -0.152 4.152 12 C -0.085 4.085 13 C -0.139 4.139 14 C -0.050 4.050 15 C -0.085 4.085 16 S -0.112 6.112 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.875 5.875 21 Si 0.858 3.142 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.015 4.015 26 O -0.349 6.349 27 C 0.022 3.978 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.399 0.601 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.141 0.859 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 -3.858 22.825 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.288 3.712 4 O -0.366 6.366 5 C 0.029 3.971 6 H 0.129 0.871 7 C 0.000 4.000 8 N -0.381 5.381 9 C 0.356 3.644 10 O -0.406 6.406 11 C -0.157 4.157 12 C -0.104 4.104 13 C -0.159 4.159 14 C -0.071 4.071 15 C -0.196 4.196 16 S 0.122 5.878 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.511 5.511 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.037 4.037 26 O -0.266 6.266 27 C -0.074 4.074 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.235 0.765 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.159 0.841 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.065 -4.665 21.500 26.664 hybrid contribution -0.301 0.975 0.475 1.125 sum -15.366 -3.691 21.975 27.067 Atomic orbital electron populations 1.23339 0.75636 1.04087 1.02781 1.86512 1.23965 1.32813 1.83971 1.23887 0.91864 0.81966 0.73435 1.90709 1.66439 1.36300 1.43201 1.21840 0.87695 0.86319 1.01292 0.87130 1.21419 0.81188 1.01887 0.95527 1.45631 1.06104 1.66927 1.19426 1.18339 0.87278 0.76911 0.81863 1.90795 1.71012 1.44880 1.33869 1.19770 0.91786 1.07126 0.97008 1.21148 0.94811 0.97846 0.96582 1.21047 0.93700 1.02266 0.98902 1.21918 1.00627 0.92796 0.91755 1.22207 0.95639 1.02099 0.99624 1.83075 1.66907 1.23007 1.14842 1.22241 1.46566 0.94743 1.02068 0.89058 1.24749 0.94560 0.96649 0.95461 1.69926 1.43624 1.26787 1.10813 0.86732 0.80191 0.83647 0.81176 1.19010 1.19806 1.16346 1.21906 0.93016 0.92522 0.96231 1.88146 1.77744 1.23910 1.36808 1.23096 0.96398 1.02693 0.85229 0.87666 0.91807 0.91528 0.88576 0.89661 0.76508 0.86466 0.85593 0.84864 0.91795 0.84095 0.93150 0.88247 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.94 10.56 -39.26 -0.41 -3.35 16 3 C 0.45 4.37 7.29 36.00 0.26 4.63 16 4 O -0.48 -6.21 16.25 -25.46 -0.41 -6.63 16 5 C 0.09 0.71 2.84 -27.88 -0.08 0.63 16 6 H 0.11 0.51 7.58 -51.93 -0.39 0.12 16 7 C 0.12 1.23 5.35 -4.04 -0.02 1.20 16 8 N -0.73 -7.85 5.38 -61.25 -0.33 -8.18 16 9 C 0.57 8.74 7.77 -12.32 -0.10 8.65 16 10 O -0.53 -10.14 16.34 5.32 0.09 -10.05 16 11 C -0.15 -2.43 5.87 -105.00 -0.62 -3.04 16 12 C -0.08 -1.07 9.54 -39.11 -0.37 -1.44 16 13 C -0.14 -1.85 10.02 -39.67 -0.40 -2.25 16 14 C -0.05 -0.85 9.79 -39.25 -0.38 -1.23 16 15 C -0.09 -1.74 5.45 -39.00 -0.21 -1.95 16 16 S -0.11 -2.69 19.38 -107.50 -2.08 -4.77 16 17 C -0.51 -14.56 10.00 30.91 0.31 -14.25 16 18 H 0.09 2.84 8.02 -52.48 -0.42 2.42 16 19 C 0.09 2.73 5.50 -17.46 -0.10 2.63 16 20 N -0.88 -26.31 13.97 55.49 0.78 -25.53 16 21 Si 0.86 20.98 27.74 -169.99 -4.71 16.26 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.24 -5.64 6.74 56.52 0.38 -5.26 16 25 C -0.02 -0.30 9.34 -38.92 -0.36 -0.66 16 26 O -0.35 -3.26 9.61 -55.14 -0.53 -3.79 16 27 C 0.02 0.12 10.76 101.05 1.09 1.21 16 28 H 0.10 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 30 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 3.17 6.39 -40.82 -0.26 2.90 16 34 H 0.12 0.97 6.40 -52.49 -0.34 0.64 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.14 2.96 7.65 -52.49 -0.40 2.56 16 39 H 0.05 0.16 8.06 -51.93 -0.42 -0.26 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -36.39 375.76 -7.07 -43.45 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.19 Total: 1.52 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 0.09 Total: -4.59 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.45 Total: -33.71 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -1.27 Total: -23.82 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.08 Total: -4.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.39 -7.07 -43.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347840552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.926 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds