Wall clock time and date at job start Tue Mar 31 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99861 * 2 1 4 4 O 1.20821 * 119.99952 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00044 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47453 * 305.00580 * 5 3 2 7 7 C 1.53007 * 109.47157 * 64.99942 * 5 3 2 8 8 N 1.46490 * 109.47443 * 179.06737 * 7 5 3 9 9 C 1.34780 * 120.00459 * 182.56129 * 8 7 5 10 10 O 1.21549 * 119.99165 * 359.97438 * 9 8 7 11 11 C 1.47853 * 120.00196 * 179.97438 * 9 8 7 12 12 C 1.39671 * 120.10158 * 359.71887 * 11 9 8 13 13 C 1.38052 * 120.03605 * 179.74285 * 12 11 9 14 14 C 1.38180 * 120.24110 * 0.56293 * 13 12 11 15 15 C 1.39180 * 120.20457 * 359.69211 * 14 13 12 16 16 S 1.76200 * 120.02074 * 180.02562 * 15 14 13 17 17 C 1.76196 * 100.00123 * 267.04616 * 16 15 14 18 18 H 1.08009 * 119.99976 * 5.20289 * 17 16 15 19 19 C 1.38725 * 120.00291 * 185.19948 * 17 16 15 20 20 N 1.31626 * 120.00373 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99655 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47142 * 89.99869 * 21 19 17 23 23 H 1.48504 * 109.46670 * 210.00039 * 21 19 17 24 24 H 1.48501 * 109.47229 * 329.99700 * 21 19 17 25 25 C 1.38875 * 119.95768 * 0.02631 * 15 14 13 26 26 O 1.42891 * 109.47328 * 184.99936 * 5 3 2 27 27 C 1.42908 * 114.00404 * 111.27756 * 26 5 3 28 28 H 1.09007 * 109.46786 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47090 * 300.00233 * 1 2 3 30 30 H 1.09000 * 109.47006 * 60.00291 * 1 2 3 31 31 H 1.09001 * 109.47104 * 299.06809 * 7 5 3 32 32 H 1.09003 * 109.46491 * 59.06276 * 7 5 3 33 33 H 0.97005 * 119.99821 * 2.55563 * 8 7 5 34 34 H 1.08000 * 119.98342 * 0.02562 * 12 11 9 35 35 H 1.07997 * 119.87596 * 180.25175 * 13 12 11 36 36 H 1.08001 * 119.89335 * 179.71655 * 14 13 12 37 37 H 0.96997 * 119.99999 * 180.02562 * 20 19 17 38 38 H 1.07996 * 120.11757 * 180.02562 * 25 15 14 39 39 H 1.08997 * 109.46389 * 54.18118 * 27 26 5 40 40 H 1.08993 * 109.47385 * 174.18173 * 27 26 5 41 41 H 1.09002 * 109.46844 * 294.18760 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9598 0.7054 0.8426 7 6 4.1081 0.6926 -1.3065 8 7 5.5698 0.7896 -1.3155 9 6 6.2655 0.3832 -2.3960 10 8 5.6800 -0.0642 -3.3627 11 6 7.7407 0.4816 -2.4053 12 6 8.4151 1.0009 -1.2979 13 6 9.7929 1.0873 -1.3059 14 6 10.5098 0.6721 -2.4118 15 6 9.8477 0.1580 -3.5229 16 16 10.7667 -0.3705 -4.9303 17 6 10.7390 1.1088 -5.8870 18 1 10.3064 2.0093 -5.4766 19 6 11.2729 1.1169 -7.1674 20 7 11.2518 2.2219 -7.8823 21 14 12.0206 -0.4408 -7.8774 22 1 10.9710 -1.2143 -8.5881 23 1 13.1013 -0.0812 -8.8304 24 1 12.5840 -1.2651 -6.7782 25 6 8.4623 0.0619 -3.5216 26 8 3.9717 2.6401 0.1179 27 6 4.5960 2.9562 1.3639 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8129 -0.3535 -1.3881 32 1 3.7015 1.2516 -2.1493 33 1 6.0369 1.1464 -0.5439 34 1 7.8588 1.3308 -0.4330 35 1 10.3120 1.4854 -0.4466 36 1 11.5873 0.7465 -2.4139 37 1 11.6248 2.2274 -8.7777 38 1 7.9459 -0.3370 -4.3821 39 1 5.4282 2.2738 1.5366 40 1 4.9662 3.9809 1.3352 41 1 3.8695 2.8547 2.1702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347840552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:22 Heat of formation + Delta-G solvation = -160.616421 kcal Electronic energy + Delta-G solvation = -25905.439214 eV Core-core repulsion = 21876.191603 eV Total energy + Delta-G solvation = -4029.247611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87665 -41.19628 -39.46366 -38.96356 -37.49792 -35.96685 -34.71219 -32.88688 -31.97594 -31.33478 -28.62208 -27.91561 -27.41228 -25.85204 -24.32336 -23.51285 -22.30298 -21.66400 -20.15605 -19.27566 -18.86736 -18.43157 -17.91131 -17.31221 -17.16078 -17.13421 -16.86805 -16.59168 -16.21973 -15.82403 -15.66488 -15.44071 -15.01589 -14.83236 -14.68526 -14.45195 -14.33580 -14.08556 -13.77749 -13.59403 -13.14066 -13.07765 -13.05709 -12.86034 -12.66736 -12.33298 -12.27675 -11.93825 -11.88510 -11.84844 -11.30030 -11.21163 -10.96882 -10.82812 -10.38107 -9.92588 -9.73137 -9.13817 -8.53331 -6.27349 -0.20468 0.22469 0.86048 1.07413 1.31957 1.36500 1.44374 1.66312 1.75459 1.99859 2.22095 2.59966 2.64766 2.84843 2.97852 3.40768 3.54168 3.67021 3.71775 3.93426 4.02610 4.25922 4.29771 4.31705 4.33149 4.43247 4.46704 4.53429 4.58730 4.68605 4.69357 4.89696 4.91644 5.13821 5.19977 5.21228 5.31579 5.45935 5.69294 5.83195 5.84283 6.10880 6.36455 6.55728 6.89171 7.06488 8.60269 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.002241 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.640784 B =12491.361910 C =13056.526881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.450 3.550 4 O -0.521 6.521 5 C 0.098 3.902 6 H 0.154 0.846 7 C 0.124 3.876 8 N -0.699 5.699 9 C 0.566 3.434 10 O -0.578 6.578 11 C -0.157 4.157 12 C -0.057 4.057 13 C -0.121 4.121 14 C -0.058 4.058 15 C -0.120 4.120 16 S -0.116 6.116 17 C -0.523 4.523 18 H 0.046 0.954 19 C 0.039 3.961 20 N -0.920 5.920 21 Si 0.923 3.077 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.225 1.225 25 C -0.042 4.042 26 O -0.378 6.378 27 C 0.011 3.989 28 H 0.134 0.866 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.418 0.582 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.139 0.861 37 H 0.278 0.722 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 -4.721 26.828 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.291 3.709 4 O -0.408 6.408 5 C 0.038 3.962 6 H 0.172 0.828 7 C 0.000 4.000 8 N -0.353 5.353 9 C 0.354 3.646 10 O -0.458 6.458 11 C -0.162 4.162 12 C -0.075 4.075 13 C -0.140 4.140 14 C -0.079 4.079 15 C -0.231 4.231 16 S 0.118 5.882 17 C -0.670 4.670 18 H 0.064 0.936 19 C -0.166 4.166 20 N -0.558 5.558 21 Si 0.743 3.257 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.149 1.149 25 C -0.064 4.064 26 O -0.296 6.296 27 C -0.084 4.084 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.194 0.806 35 H 0.196 0.804 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.758 -5.522 25.571 30.036 hybrid contribution -0.568 1.340 -0.541 1.553 sum -15.326 -4.182 25.031 29.647 Atomic orbital electron populations 1.23607 0.74419 1.05992 1.02604 1.86512 1.25240 1.32045 1.83394 1.24302 0.92628 0.81722 0.72214 1.90693 1.67401 1.37564 1.45183 1.21836 0.86451 0.86580 1.01363 0.82834 1.21438 0.80245 1.02297 0.96024 1.45343 1.06485 1.65022 1.18485 1.18331 0.87191 0.76773 0.82259 1.90779 1.71739 1.47331 1.35974 1.19879 0.92204 1.07123 0.97026 1.21767 0.94985 0.94225 0.96520 1.21580 0.93909 0.99812 0.98695 1.22106 1.01331 0.92556 0.91877 1.22071 0.95786 1.06019 0.99261 1.82616 1.68280 1.20794 1.16516 1.22386 1.45843 0.95680 1.03106 0.93589 1.25752 0.94941 1.00138 0.95770 1.70036 1.45035 1.29181 1.11545 0.85760 0.79673 0.79406 0.80834 1.18765 1.18208 1.14872 1.21652 0.92993 0.94638 0.97098 1.88123 1.78163 1.24475 1.38879 1.23368 0.97396 1.03794 0.83868 0.84747 0.91428 0.92354 0.87683 0.92288 0.74332 0.80569 0.80355 0.84304 0.91293 0.87495 0.89909 0.88002 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.28 10.56 -51.44 -0.54 -5.82 16 3 C 0.45 8.13 7.29 71.23 0.52 8.65 16 4 O -0.52 -13.23 16.25 28.40 0.46 -12.77 16 5 C 0.10 1.28 2.84 29.85 0.08 1.37 16 6 H 0.15 0.66 7.58 -2.38 -0.02 0.64 16 7 C 0.12 2.23 5.35 86.38 0.46 2.69 16 8 N -0.70 -12.99 5.38 -465.97 -2.51 -15.50 16 9 C 0.57 16.85 7.77 86.79 0.67 17.53 16 10 O -0.58 -22.84 16.34 -3.87 -0.06 -22.91 16 11 C -0.16 -4.79 5.87 -20.11 -0.12 -4.91 16 12 C -0.06 -1.14 9.54 22.57 0.22 -0.93 16 13 C -0.12 -2.60 10.02 22.21 0.22 -2.37 16 14 C -0.06 -1.86 9.79 22.48 0.22 -1.64 16 15 C -0.12 -5.02 5.45 22.65 0.12 -4.89 16 16 S -0.12 -5.74 19.38 -56.49 -1.09 -6.84 16 17 C -0.52 -31.48 10.00 67.94 0.68 -30.80 16 18 H 0.05 3.07 8.02 -2.91 -0.02 3.04 16 19 C 0.04 2.32 5.50 84.84 0.47 2.79 16 20 N -0.92 -57.54 13.97 21.63 0.30 -57.24 16 21 Si 0.92 44.23 27.74 68.60 1.90 46.13 16 22 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.23 -10.21 6.74 99.48 0.67 -9.54 16 25 C -0.04 -1.70 9.34 22.70 0.21 -1.49 16 26 O -0.38 -6.05 9.61 -129.95 -1.25 -7.30 16 27 C 0.01 0.08 10.76 113.37 1.22 1.30 16 28 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.42 4.38 6.39 -92.70 -0.59 3.79 16 34 H 0.18 1.49 6.40 -2.91 -0.02 1.47 16 35 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.11 4.93 7.65 -2.91 -0.02 4.90 16 39 H 0.08 0.04 8.06 -2.39 -0.02 0.02 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -88.15 375.76 3.82 -84.32 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.44 Total: 9.16 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 6.18 Total: -11.25 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -2.20 Total: -72.74 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.39 Total: -48.79 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.13 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.09 Total: -6.84 kcal Total: -88.15 3.82 -84.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347840552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.296 kcal (2) G-P(sol) polarization free energy of solvation -88.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds