Wall clock time and date at job start Tue Mar 31 2020 22:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99943 * 2 1 4 4 O 1.20821 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99761 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.37105 * 120.00071 * 263.99341 * 6 5 3 8 8 H 1.07998 * 120.00292 * 197.01497 * 7 6 5 9 9 C 1.38950 * 119.99881 * 17.00378 * 7 6 5 10 10 N 1.31416 * 119.99684 * 21.26460 * 9 7 6 11 11 Si 1.86797 * 120.00389 * 201.25762 * 9 7 6 12 12 H 1.48500 * 109.46997 * 90.00323 * 11 9 7 13 13 H 1.48500 * 109.47238 * 210.00536 * 11 9 7 14 14 H 1.48507 * 109.46972 * 330.00417 * 11 9 7 15 15 C 1.34776 * 120.00259 * 83.98541 * 6 5 3 16 16 O 1.21286 * 119.99957 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99905 * 180.27615 * 15 6 5 18 18 S 1.81404 * 109.46909 * 179.72928 * 17 15 6 19 19 C 1.76204 * 102.99840 * 180.02562 * 18 17 15 20 20 C 1.39034 * 120.05303 * 359.72297 * 19 18 17 21 21 C 1.38092 * 120.02686 * 179.70041 * 20 19 18 22 22 C 1.38235 * 120.13426 * 0.59644 * 21 20 19 23 23 C 1.38781 * 120.10176 * 359.68193 * 22 21 20 24 24 O 1.35908 * 120.01209 * 179.97438 * 23 22 21 25 25 C 1.42899 * 117.00104 * 0.02562 * 24 23 22 26 26 C 1.38591 * 119.97593 * 0.02562 * 23 22 21 27 27 H 1.09006 * 109.47137 * 300.00658 * 1 2 3 28 28 H 1.08997 * 109.47177 * 59.99832 * 1 2 3 29 29 H 1.08995 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47460 * 60.00233 * 5 3 2 31 31 H 1.09003 * 109.47391 * 299.99693 * 5 3 2 32 32 H 0.96999 * 119.99878 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47258 * 299.72882 * 17 15 6 34 34 H 1.08998 * 109.46881 * 59.73150 * 17 15 6 35 35 H 1.07998 * 119.98240 * 359.97438 * 20 19 18 36 36 H 1.07996 * 119.93011 * 180.29945 * 21 20 19 37 37 H 1.08003 * 119.94413 * 179.69961 * 22 21 20 38 38 H 1.09006 * 109.46834 * 300.00436 * 25 24 23 39 39 H 1.09001 * 109.47188 * 59.99639 * 25 24 23 40 40 H 1.08993 * 109.47014 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.07249 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2948 3.3016 -1.1822 8 1 4.8541 4.2254 -1.1744 9 6 3.8928 2.7430 -2.3893 10 7 2.8930 1.8907 -2.4182 11 14 4.7732 3.2038 -3.9710 12 1 5.9033 2.2678 -4.1992 13 1 3.8231 3.1196 -5.1091 14 1 5.2934 4.5906 -3.8620 15 6 4.0560 3.3609 1.1595 16 8 3.7793 2.8108 2.2044 17 6 4.4774 4.8079 1.1582 18 16 4.4714 5.4408 2.8582 19 6 4.9805 7.1159 2.6593 20 6 5.2716 7.6094 1.3924 21 6 5.6645 8.9240 1.2364 22 6 5.7815 9.7489 2.3395 23 6 5.4980 9.2604 3.6071 24 8 5.6141 10.0729 4.6904 25 6 6.0322 11.4182 4.4506 26 6 5.0974 7.9435 3.7681 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 2.6120 1.5010 -3.2609 33 1 5.4811 4.8936 0.7421 34 1 3.7819 5.3882 0.5520 35 1 5.1860 6.9655 0.5296 36 1 5.8855 9.3070 0.2512 37 1 6.0938 10.7752 2.2144 38 1 7.0156 11.4146 3.9803 39 1 5.3162 11.9092 3.7915 40 1 6.0843 11.9566 5.3968 41 1 4.8759 7.5618 4.7539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348801077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:07 Heat of formation + Delta-G solvation = -111.345220 kcal Electronic energy + Delta-G solvation = -26580.182698 eV Core-core repulsion = 22553.071647 eV Total energy + Delta-G solvation = -4027.111051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.04097 -39.54076 -38.34633 -37.34289 -35.51493 -34.71043 -31.76324 -31.11239 -30.70140 -29.67243 -27.91133 -27.37522 -26.14049 -24.70004 -22.79404 -22.15613 -20.51377 -19.42337 -18.61738 -17.34159 -16.67638 -16.57908 -16.26744 -15.91517 -15.85759 -15.64721 -15.53506 -15.26577 -14.57111 -14.47779 -14.22898 -13.89175 -13.74745 -13.24872 -13.01171 -12.75385 -12.67610 -12.51562 -12.16548 -11.85310 -11.71024 -11.51739 -11.40062 -11.33349 -11.25883 -11.09054 -10.89329 -10.70932 -10.53340 -9.86092 -9.73896 -9.69199 -9.57402 -9.11614 -8.84868 -8.31984 -8.11783 -7.08937 -6.64970 -4.15566 1.24005 1.44904 1.71226 2.78095 2.98113 3.10208 3.12753 3.21928 3.35640 3.62420 3.71594 3.86223 3.97846 4.49444 4.72947 4.83468 4.94677 4.95236 4.97047 5.23050 5.27129 5.39386 5.53622 5.61970 5.67569 5.70219 5.76477 5.89824 5.91117 5.97473 6.15881 6.23861 6.32895 6.35346 6.43853 6.52602 6.59985 7.17211 7.32564 7.34795 7.47482 8.05479 8.81043 9.02211 9.16181 9.56243 10.42065 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.002987 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.452320 B = 9371.536965 C =10815.847793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.484 3.516 4 O -0.498 6.498 5 C 0.158 3.842 6 N -0.420 5.420 7 C -0.345 4.345 8 H 0.104 0.896 9 C 0.042 3.958 10 N -0.862 5.862 11 Si 0.927 3.073 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.484 3.516 16 O -0.584 6.584 17 C -0.117 4.117 18 S -0.035 6.035 19 C -0.055 4.055 20 C -0.173 4.173 21 C -0.060 4.060 22 C -0.224 4.224 23 C 0.141 3.859 24 O -0.318 6.318 25 C 0.029 3.971 26 C -0.138 4.138 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.275 0.725 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 9.662 4.296 11.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.325 3.675 4 O -0.383 6.383 5 C 0.032 3.968 6 N -0.139 5.139 7 C -0.472 4.472 8 H 0.122 0.878 9 C -0.165 4.165 10 N -0.499 5.499 11 Si 0.753 3.247 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.271 3.729 16 O -0.470 6.470 17 C -0.267 4.267 18 S 0.211 5.789 19 C -0.169 4.169 20 C -0.197 4.197 21 C -0.080 4.080 22 C -0.246 4.246 23 C 0.094 3.906 24 O -0.231 6.231 25 C -0.067 4.067 26 C -0.164 4.164 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.951 8.766 5.809 11.234 hybrid contribution 0.389 1.315 -2.632 2.967 sum 4.340 10.081 3.177 11.426 Atomic orbital electron populations 1.22945 0.78564 1.01874 1.01702 1.86449 1.21786 1.35349 1.85678 1.23868 0.92204 0.80648 0.70736 1.90523 1.66465 1.36366 1.44898 1.20495 0.87445 0.85008 1.03863 1.43269 1.56723 1.08136 1.05774 1.19631 1.35005 1.10302 0.82217 0.87799 1.25246 0.94596 0.96870 0.99745 1.69852 1.21789 1.29995 1.28266 0.85921 0.79081 0.79216 0.80441 1.19964 1.20870 1.19325 1.19118 0.83008 0.86331 0.84398 1.90596 1.55261 1.69549 1.31578 1.23661 1.06441 0.99663 0.96973 1.86078 1.82078 0.99830 1.10903 1.22033 0.99880 0.99420 0.95519 1.21232 1.05364 0.96941 0.96157 1.20823 0.96075 0.92959 0.98129 1.21141 1.10243 1.01012 0.92161 1.18793 0.95713 0.90224 0.85866 1.86064 1.83222 1.22550 1.31308 1.23029 0.99409 0.80947 1.03267 1.19836 1.07022 0.90824 0.98672 0.93075 0.92591 0.89538 0.85750 0.89690 0.91432 0.87525 0.87006 0.85294 0.85630 0.85669 0.92706 0.92693 0.88396 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.82 16 2 O -0.37 -8.00 10.57 -39.26 -0.41 -8.41 16 3 C 0.48 11.84 6.13 36.00 0.22 12.06 16 4 O -0.50 -13.71 15.76 -18.75 -0.30 -14.00 16 5 C 0.16 3.67 5.14 -5.20 -0.03 3.65 16 6 N -0.42 -10.17 2.18 -116.10 -0.25 -10.42 16 7 C -0.34 -8.17 9.14 -14.93 -0.14 -8.31 16 8 H 0.10 2.27 6.56 -52.49 -0.34 1.92 16 9 C 0.04 0.98 4.88 -17.47 -0.09 0.90 16 10 N -0.86 -21.45 9.27 55.50 0.51 -20.93 16 11 Si 0.93 18.29 29.60 -169.99 -5.03 13.25 16 12 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 15 C 0.48 11.48 7.44 -10.98 -0.08 11.40 16 16 O -0.58 -15.15 15.55 5.55 0.09 -15.06 16 17 C -0.12 -2.28 3.27 36.01 0.12 -2.16 16 18 S -0.04 -0.65 21.06 -107.50 -2.26 -2.92 16 19 C -0.05 -0.88 6.11 -39.06 -0.24 -1.12 16 20 C -0.17 -2.53 9.36 -39.34 -0.37 -2.90 16 21 C -0.06 -0.75 10.03 -39.64 -0.40 -1.15 16 22 C -0.22 -2.66 9.04 -39.38 -0.36 -3.02 16 23 C 0.14 1.90 6.68 -39.25 -0.26 1.63 16 24 O -0.32 -3.85 10.49 -19.45 -0.20 -4.06 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 C -0.14 -2.07 9.73 -39.22 -0.38 -2.45 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.12 2.85 6.38 -51.93 -0.33 2.52 16 31 H 0.09 1.85 7.61 -51.93 -0.40 1.45 16 32 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.11 1.86 7.29 -51.92 -0.38 1.48 16 34 H 0.11 2.17 7.71 -51.92 -0.40 1.77 16 35 H 0.13 1.85 5.87 -52.49 -0.31 1.54 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.14 6.29 -52.48 -0.33 0.81 16 38 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 39 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -31.48 363.10 -7.28 -38.76 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.95 Total: 6.76 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 0.06 Total: 11.56 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.26 Total: -31.35 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.83 Total: -41.54 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.26 Total: -2.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.48 -7.28 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348801077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.584 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds